These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCGATCCAACGCAAACTCGACAAGAGTGGGCTGGATAAGGAAGCTGCTGTTGAATTTAAGAATATTGATCTAACCGTACGTAAGCTAATCCACGATGGGCCTTTAACGATGAAGAAGAATCCAGGTGTACAACTGCATGGGCTGCTGTTCGAAGATATCATGGTGTTGCTGCAGAAGCAGGACGACAAGTATCTTGTCAAGTATCACTCTAGTCCCGGGCTCGGCGGAAGCGAAAGCAAGTACGCCGAGGGCCGCTTTAATCCGATCACCAAAATCCATCTCATCCTGGTGCGACAGAGCGCCGTCGACAAAAACACGTTCTTCCTAATCAACACCAACGTCTCGCAGATGCTGGAACTGACCGCGCCGAGCAGCACCGAGTGCAAAACATGGTTTAAGCATATTTCCGATGCCGCCGAAGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGGTGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACAGACCTCGACGCCGATCGAGCGACTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAGCAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCAGCAGCAACAGTCACCTGCGA] [+] EMBL BM616946 [CCGATCCAACGCAAACTCGACAAGAGTGGGCTGGATAAGGAAGCTGCTGTTGAATTTAAGAATATTGATCTAACCGTACGTAAGCTAATCCACGATGGGCCTTTAACGATGAAGAAGAATCCAGGTGTACAACTGCATGGGCTGCTGTTCGAAGATATCATGGTGTTGCTGCAGAAGCAGGACGACAAGTATCTTGTCAAGTATCACTCTAGTCCCGGGCTCGGCGGAAGCGAAAGCAAGTACGCCGAGGGCCGCTTTAATCCGATCACCAAAATCCATCTCATCCTGGTGCGACAGAGCGCCGTCGACAAAAACACGTTCTTCCTAATCAACACCAACGTCTCGCAGATGCTGGAACTGACCGCGCCGAGCAGCACCGAGTGCAAAACATGGTTTAAGCATATTTCCGATGCCGCCGAAGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGGTGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACAGACCTCGACGCCGATCGAGCGACTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAGCAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCAGCAGCAACAGTCACCTGCGA] consensusID : consensus_838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [CCGCCCACGCGTCCGGTGATTTTTGAAGTTCGAAAAAATGATGAACTTAACAGTGCCTGCCGTTACGGGCAGGTTGCGGCGCAAAAGCATTGCCGCAGAGGTGGCCCACTGTTTGCCGGAGCTTCGCTTCGACGACGGTACCGGTGGTTCGGCGAAGCAGCACACGAAGCGCCGTGGCAGCCTTGGAGGGGAACCGATCCGTCGGCCATCACTCGTTTCCAGATGGTTTAAGCATATTTCCGATGCCGCCGAAGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGGTGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACAGACCTCGACGCCGATCGAGCGGCTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAGCAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCAGCAGCAACAGTCACCTGCGAGTCAGCAAGCTGCCGGTCAGCCGCACCACCACCACCATCATCCTCACTCCGGTGGTGGTCGATCGGATGACTCGCGCCCTCCCGTCCGTG] [+] EMBL BM624770 [CCGCCCACGCGTCCGGTGATTTTTGAAGTTCGAAAAAATGATGAACTTAACAGTGCCTGCCGTTACGGGCAGGTTGCGGCGCAAAAGCATTGCCGCAGAGGTGGCCCACTGTTTGCCGGAGCTTCGCTTCGACGACGGTACCGGTGGTTCGGCGAAGCAGCACACGAAGCGCCGTGGCAGCCTTGGAGGGGAACCGATCCGTCGGCCATCACTCGTTTCCAGATGGTTTAAGCATATTTCCGATGCCGCCGAAGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGGTGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACAGACCTCGACGCCGATCGAGCGGCTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAGCAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCAGCAGCAACAGTCACCTGCGAGTCAGCAAGCTGCCGGTCAGCCGCACCACCACCACCATCATCCTCACTCCGGTGGTGGTCGATCGGATGACTCGCGCCCTCCCGTCCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_838#0 CCGATCCAACGCAAACTCGACAAGAGTGGGCTGGATAAGGAAGCTGCTGTTGAATTTAAG 60 consensus_838#1 ------------------------------------------------------------ consensus_838#0 AATATTGATCTAACCGTACGTAAGCTAATCCACGATGGGCCTTTAACGATGAAGAAGAAT 120 consensus_838#1 ------------------------------------------------------------ consensus_838#0 CCAGGTGTACAACTGCATGGGCTGCTGTTCGAAGATATCATGGTGTTGCTGCAGAAGCAG 180 consensus_838#1 ------------------------CCGCCC--ACGCGTC-CGGTGATTTTTGAAGTTCGA 33 * * * * ** **** * * * * consensus_838#0 GACGACAAGTATCTTGTCAAGTATCACTCTAGTCCCGGGCTCGGCG-GAAGCGAAAGCAA 239 consensus_838#1 AAAAATGATGAACTTAACAG---TGCCTGCCGTTACGGGCAGGTTGCGGCGCAAAAGCAT 90 * * * * *** ** * ** ** ***** * * * ** ****** consensus_838#0 GTACGCCGAGGGCCGCTTTAATCCGATCACCAAAATCCATCTCATCCTGGTGCGACAGAG 299 consensus_838#1 TGCCGCAGAGG--TGGCCCA--CTGTTTGCCGGAGCTTCGCTTCGACGACGGTACCGGTG 146 *** **** * * * * * ** * ** * * * * * consensus_838#0 CGCCGTCGACAAAAACACGTTCTTCCTAATCAACACCAACGTCTCGCAGATGCTGGAACT 359 consensus_838#1 GTTCGGCGA-AGCAGCACA------CGAAGCGCCGTGGCAGCCTTGGAGG----GGAACC 195 ** *** * * *** * ** * * * ** * ** ***** consensus_838#0 GACCGCGCCGAGCAGCACCGAGTGCAAAACATGGTTTAAGCATATTTCCGATGCCGCCGA 419 consensus_838#1 GATC-CGTCGGCCATCACTCGTTTCCAGA--TGGTTTAAGCATATTTCCGATGCCGCCGA 252 ** * ** ** ** *** * * * * ***************************** consensus_838#0 AGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGG 479 consensus_838#1 AGCGTACAAATCACGTACCAAAGGAACGCACGAGTACGGTGAGGACAGTGCCGGTGGTGG 312 ************************************************************ consensus_838#0 TGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACA 539 consensus_838#1 TGCTGGTCAGCCACCGAAGGACAGCTTCGAAACCGTCACCGAGACGCAGAAGATCGAACA 372 ************************************************************ consensus_838#0 GACCTCGACGCCGATCGAGCGACTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAG 599 consensus_838#1 GACCTCGACGCCGATCGAGCGGCTCGAGCGCAAGGACACGCAGTGTCGGGCGGTGAGCAG 432 ********************* ************************************** consensus_838#0 CAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCA 659 consensus_838#1 CAGTGCCGGCCATCATCACCATCACCACCACCCAGCACAGCCGCATCACCCGCACCAGCA 492 ************************************************************ consensus_838#0 GCAGCAACAGTCACCTGCGA---------------------------------------- 679 consensus_838#1 GCAGCAACAGTCACCTGCGAGTCAGCAAGCTGCCGGTCAGCCGCACCACCACCACCATCA 552 ******************** consensus_838#0 -------------------------------------------------- consensus_838#1 TCCTCACTCCGGTGGTGGTCGATCGGATGACTCGCGCCCTCCCGTCCGTG 602 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||