These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 808 fasta sequence [CCGCGTGACCCGGAAAAGGTGAAACAGCAGGATGACGGGCGTCTTTGGACAGCTCACGCCCCCGGGCGTACCCGGCCA-ATGGGCGGACAAGGCCCCAGCGAAGGAGCCGCTGGACGCGCACACGGTGGACGTGCCGGCCATCGGCACAGCGGAACGGCAGGGCTGCCTGTGCACGCTGGAGCGCACGGCCATCCGGAACCGGCTGCGCGTGGCACAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGGCCGCAGTACAACGAC-GGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGATTTCGCTCGTGCTGCTGTGGGACCGGCACTGCTCGGGCACGATCGTGCGCAGCCAGCTGCCCCTGCTCGACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGCCACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGGCTGGTACGTGTGCAACT-GGGCGTCGAGCGTGCTGACGCTGCTGACCGCGCTGGCGTAC-GGGGGCGAAACCTGGCTCCAGCTGCGCGACCAGTACGAC-GGCCGCACGGCCATCGGACAGTAGGGAGGAGCAAACCGCTCTGCCCGTACAGTCCA-TTTGTTTGGGGTTTTTTTTGCGC--CGCGCAGTGTGTATGTGACTTGGCAGCTTGCATCAAAGCTTGCATCGCTTCGCTTGTACCCAAGCTACCGCCATCTGGCGGGAAGCACGGTGTACTTTACCCCTTTCTGCAGGGGTAACACACGGCTTTGTTTTTGCAATAAATATTCGAGT] [+] EMBL BM627165 [CCGCGTGACCCGGAAAAGGTGAAACAGCAGGATGACGGGCGTCTTTGGACAGCTCACGCCCCCGGGCGTACCCGGCCA ATGGGCGGACAAGGCCCCAGCGAAGGAGCCGCTGGACGCGCACACGGTGGACGTGCCGGCCATCGGCACAGCGGAACGGCAGGGCTGCCTGTGCACGCTGGAGCGCACGGCCATCCGGAACCGGCTGCGCGTGGCACAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGGCCGCAGTACAACGAC GGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGATTTCGCTCGTGCTGCTGTGGGACCGGCACTGCTCGGGCACGATCGTGCGCAGCCAGCTGCCCCTGCTCGACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGCCACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGGCTGGTACGTGTGCAACT GGGCGTCGAGCGTGCTGACGCTGCTGACCGCGCTGGCGTAC GGGGGCGAAACCTGGCTCCAGCTGCGCGACCAGTACGAC GGCCGCACGGCCATCGGACAGTAGGGAGGAGCAAACCGCTCTGCCCGTACAGTCCA TTTGTTTGGGGTTTTTTTTGCGC CGCGCAGTGTGTATGTGACTTGG ] [+] EMBL BM583182 [CCGCGTGACCCGGAAAAGGTGAAACAGCAGGATGACGGGCGTCTTTGGACAGCTCACGCCCCCGGGCGTACCCGGCCA ATGGGCGGACAAGGCCCCAGCGAAGGAGCCGCTGGACGCGCACACGGTGGACGTGCCGGCCATCGGCACAGCGGAACGGCAGGGCTGCCTGTGCACGCTGGAGCGCACGGCCATCCGGAACCGGCTGCGCGTGGCACAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGGCCGCAGTACAACGAC GGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGATTTCGCTCGTGCTGCTGTGGGACCGGCACTGCTCGGGCACGATCGTGCGCAGCCAGCTGCCCCTGCTCGACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGCCACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGGCTGGTACGTGTGCAACT GGGCGTCGAGCGTGCTGACGCTGCTGACCGCGCTGGCGTAC GGGGGCGAAACCTGGCTCCAGCTGCGCGACCAGTACGAC GGCCGCACGGCCATCGGACAGTAGGGAGGAGCAAACCGCTCTGCCCGTACAGTCCATTTTGTTTGGGGTTTTTTTTGCGC CGCGCAGT ] [+] EMBL BX624986 [ GAAAAGGTGAAACAGCAGGATGACGGGCGTCTTTGGACAGCTCACGCCCCCGGGCGTACCCGGCCA ATGGGCGGACAAGGCCCCAGCGAAGGAGCCGCTGGACGCGCACACGGTGGACGTGCCGGCCATCGGCACAGCGGAACGGCAGGGCTGCCTGTGCACGCTGGAGCGCACGGCCATCCGGAACCGGCTGCGCGTGGCACAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGGCCGCAGTACAACGAC GGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGATTTCGCTCGTGCTGCTGTGGGACCGGCACTGCTCGGGCACGATCGTGCGCAGCCAGCTGCCCCTGCTCGACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGCCACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGGCTGGTACGTGTGCAACT GGGCGTCGAGCGTGCTGACGCTGCTGACCGCGCTGGCGTAC GGGGGCGAAACCTGGCTCCAGCTGCGCGACCAGTACGAC GGCCGCACGGCCATCGGACAGTAGGGAGGAGCAAACCGCTCTGCCCGTACAGTCCA TTTGTTTGGGGTTTTTTTTGCGC CGCGCAGTGTGTATGTGACTTGGCAGCTTGCATCAAAGCTTGCATCGCTTCGCTTGTAC ] [+] EMBL BX618138 [ GCGTCTTTGGACAGCTCACGCCCCCGGGCGTACCCGGCCA ATGGGCGGACAAGGCCCCAGCGAAGGAGCCGCTGGACGCGCACACGGTGGACGTGCCGGCCATCGGCACAGCGGAACGGCAGGGCTGCCTGTGCACGCTGGAGCGCACGGCCATCCGGAACCGGCTGCGCGTGGCACAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGGCCGCAGTACAACGAC GGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGATTTCGCTCGTGCTGCTGTGGGACCGGCACTGCTCGGGCACGATCGTGCGCAGCCAGCTGCCCCTGCTCGACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGCCACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGGCTGGTACGTGTGCAACT GGGCGTCGAGCGTGCTGACGCTGCTGACCGCGCTGGCGTAC GGGGGCGAAACCTGGCTCCAGCTGCGCGACCAGTACGAC GGCCGCACGGCCATCGGACAGTAGGGAGGAGCAAACCGCTCTGCCCGTACAGTCCA TTTGTTTGGGGTTTTTTTTGCGC CGCGCAGTGTGTATGTGACTTGGCAGCTTGCATCAAAGCTTGCATCGCTTCGCTTGTACCCAAGCTACCGCCATCTGGCGGGAAGCACGGTGTACTTTACCCCTTTCTGCAGGGGTAACACACGGCTTTGTTTTTGCAATAAATATTCGAGT] [+] EMBL CNS098O5 [ CCCGGGCGTACCCGGCCACATGGGCGGACAAGGCCCCAGCGAAGGAGCCGCTGGACGCGCACACGGTGGACGTGCCGGCCATCGGCACAGCGGAACGGCAGGGCTGCCTGTGCACGCTGGAGCGCACGGCCATCCGGAACCGGCTGCGCGTGGCACAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGGCCGCAGTACAACGAC GGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGATTTCGCTCGTGCTGCTGTGGGACCGGCACTGCTCGGGCACGATCGTGCGCA CCAGCTGCCCCTGCTCGACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGCCACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGGCTGGTACGTGTGCAACTGGGGTGTCGAGCGTGCTGACGCTGCTGACCGCGCTGGCGTACGGGGGGCGAAACCTt ] [+] EMBL BX618416 [ GGCCA ATGGGCGGACAAGGCCCCAGCGAAGGAGCCGCTGGACGCGCACACGGTGGACGTGCCGGCCATCGGCACAGCGGAACGGCAGGGCTGCCTGTGCACGCTGGAGCGCACGGCCATCCGGAACCGGCTGCGCGTGGCACAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGGCCGCAGTACAACGAC GGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGATTTCGCTCGTGCTGC ] [+] EMBL BM618215 [ CACGGTGGACGTGCCGGCCATCAGCACAGCGGAACGGCAGGGCTGCCTGTGCACGCTGGATCGCACGGCCATCCGGAACCGGCTGCGCGTGGCACAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGGCCGCAGTACAACGACTCGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGATTTCGCTCGTGCTGCTGTGGGACCGGCACCGCTCGGGCACGATCGTGCGCATCCAGCTGCCCCTGCTCGACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGCCACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGGCTGGTACGTGTGCAACT GGGCGTCGAGCGTGCTGACGCTGCTGACCGCGCTGGCGTAC GGGGGCGAAACCTGGCTCCAGCTGCGCGACCAGTACGACGGGACGCACGGCCATCGGACAGTAGGGAGGAGCAAACCGCTCTGCCCGTACAGTCCA TTTGTTTGGG TTTTTTTGCGCCGCGCGCAGTGTGTATGTGAGTTGGCAGCTTGCATCAAAGCTTGCATC ] [-] EMBL CNS098O6 [ CGCACGGCCATCCGGAACCGG TGCGCGTGGAACAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGGCCGCAGTACAACGAC GGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGTTTTCGCTCGGGCTGCTGTGGGACCGGCACTGCTCGGGCACGATCGTGCGCAGCCAGCTGCCCCTGCTCAACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGCCACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGGCTGGTACGTGTGCAACT GGGTGTCGAGCGTG TGACGCTGCTGACCGGGCTGGCGTAC GGGGGCGAAACCTGGCTCCAG TGCGCGACCAGTACGAC GGCCGCACGGCCATCGGACAGTAGGGAGGAGCAACCCTTTCTGCCCGTACAGTCCA TTTGTTTGGG TTTTTTGCGCCGCGCGCAGTGTGTATGTGAGTTGGCAGCTTGCATCAAAGCTTGCA AACTTCGCTTGT ] consensusID : consensus_8384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 712 fasta sequence [CTGTTGGCCTACTGGGTAGCGGTTCCACCGTGACCCGGAAAAG-GTGAAACAGCGGAACGGCAAAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGACCGCAGTACAACGACGGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGTTTTCGCTCGTGCTGCTGTGGGACCGGCACCGCTCGGGCACGATCGTGCGCAGCCAGCTGCCCCTGCTCAACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGCCACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGGCTGGTACGTGTGCAACTGGGCGTCGAGCGTG-TGACGCTGCTGACCGCGCTGGCGTACGGGGGCGAAACCTGGCTCCAG-TGCGCGACCAGTACGACGGCCGCACGGCCATCGGACAGTAGGGAGGAGCAAACCGCTCTGCCCGTACAGTCCATTTGTTTGGGTTTTTTTGCGCCGCGCGCAGTGTGTATGTGAGTTGGCAGCTTGCATCAAAGCTTGCAAATCTTCGCTTGTACCCATGCTACCGCCATCTGGCGGGAAGCACGGTGTACTTTACCCCTTTCTGCAGGGGTAACACACGCTTTGTTTTGCAATAAATATTCGAGTTTTGAAATTAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGGTGGGT] [-] EMBL CNS08KAV [CTGTTGGCCTACTGGGTAGCGGTTCCACCGTGACCCGGAAAAG GTGAAACAGCGGAACGGCAAAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGACCGCAGTACAACGACGGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGTTTTCGCTCGTGCTGCTGTGGGACCGGCACCGCTCGGGCACGATCGTGCGCAGCCAGCTGCCCCTGCTCAACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGCCACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGGCTGGTACGTGTGCAACTGGGCGTCGAGCGTG TGACGCTGCTGACCGCGCTGGCGTACGGGGGCGAAACCTGGCTCCAG TGCGCGACCAGTACGACGGCCGCACGGCCATCGGACAGTAGGGAGGAGCAAACCGCTCTGCCCGTACAGTCCATTTGTTTGGGTTTTTTTGCGCCGCGCGCAGTGTGTATGTGAGTTGGCAGCTTGCATCAAAGCTTGCAAATCTTCGCTTGTACCCAT ] [+] EMBL CNS08KAU [ CGTGACCCGGAAAAGCGTG AACAGCGGAACGGCACAGTTGCTCCTGACGATCGGTGCGCTGGCCCTGATCCGACCGCAGTACAACGACGGCGTACAGTGGACGACCCTGTTCGCCCTCTGCCACACGTTCGTGATTTCGCTCGTGCTGCTGTGGGACCGGCACCGCTCGGGCACGATCGTGCGCA CCAGCTGCCCCTGCTCGACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGCCACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGGCTGGTACGTGTGCAACTGGGCGTCGAGCGTGCTGACGCTGCTGACCGCGCTGGCGTACGGGGGCGAAACCTGGCTCCAGCTGCGCGACCAGTACGACGGCCGCACGG CATCGGACAGTAGGGAGGAGCAAACCGCTCTGCCCGTACAGTCCATTTGTTTGGGTTTTTTTGCGCCGCGCGCAGTGTGTATGTGAGTTGGCAGCTTGCATCAAAGCTTGCATCGCTTCGCTTGTACCCATGCTACCGCCATCTGGCGGGAAGCACGGTGTACTTTACCCCTTTCTGCAGGGGTAACACACGCTTTGTTTTGCAATAAATATTCGAGTTTTGAAATTAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGGTGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8384#0 CCGCGTGACCCGGAAAAGGTGAAACAGCAGGATGACGGGCGTCTTTGGACAGCTCACGCC 60 consensus_8384#1 ------------------------------------------------------------ consensus_8384#0 CCCGGGCGTACCCGGCCAATGGGCGGACAAGGCCCCAGCGAAGGAGCCGCTGGACGCGCA 120 consensus_8384#1 ------------------------------------------------------------ consensus_8384#0 CACGGTGGACGTGCCGGCCATCGGCACAGCGGAACGGCAGGGCTGCCTGTGCACGCTGGA 180 consensus_8384#1 --------------------------CTGTTGGCCTACTGGGTAGCGGTTCCACCGTG-- 32 * * * * * *** ** * *** ** consensus_8384#0 GCGCACGGCCATCCGGAACCGGCTGCGCGTGGCACAGTTGCTCCTGACGATCGGTGCGCT 240 consensus_8384#1 --ACCCGGAAAAGGTGAAACAGCGGAACG--GCAAAGTTGCTCCTGACGATCGGTGCGCT 88 * *** * *** * ** * ** *** ************************* consensus_8384#0 GGCCCTGATCCGGCCGCAGTACAACGACGGCGTACAGTGGACGACCCTGTTCGCCCTCTG 300 consensus_8384#1 GGCCCTGATCCGACCGCAGTACAACGACGGCGTACAGTGGACGACCCTGTTCGCCCTCTG 148 ************ *********************************************** consensus_8384#0 CCACACGTTCGTGATTTCGCTCGTGCTGCTGTGGGACCGGCACTGCTCGGGCACGATCGT 360 consensus_8384#1 CCACACGTTCGTGTTTTCGCTCGTGCTGCTGTGGGACCGGCACCGCTCGGGCACGATCGT 208 ************* ***************************** **************** consensus_8384#0 GCGCAGCCAGCTGCCCCTGCTCGACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGC 420 consensus_8384#1 GCGCAGCCAGCTGCCCCTGCTCAACTGGCGCCGGCTGGAGCTGTGGTACACGGCGCTTGC 268 ********************** ************************************* consensus_8384#0 CACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGG 480 consensus_8384#1 CACCGTCGCGCTGTACGGGCTCGCGTACGGCGTCCTGTTCGCGCACAAGGGCTACGGCGG 328 ************************************************************ consensus_8384#0 CTGGTACGTGTGCAACTGGGCGTCGAGCGTGCTGACGCTGCTGACCGCGCTGGCGTACGG 540 consensus_8384#1 CTGGTACGTGTGCAACTGGGCGTCGAGCGTG-TGACGCTGCTGACCGCGCTGGCGTACGG 387 ******************************* **************************** consensus_8384#0 GGGCGAAACCTGGCTCCAGCTGCGCGACCAGTACGACGGCCGCACGGCCATCGGACAGTA 600 consensus_8384#1 GGGCGAAACCTGGCTCCAG-TGCGCGACCAGTACGACGGCCGCACGGCCATCGGACAGTA 446 ******************* **************************************** consensus_8384#0 GGGAGGAGCAAACCGCTCTGCCCGTACAGTCCATTTGTTTGGGGTTTTTTTTGCGCCGCG 660 consensus_8384#1 GGGAGGAGCAAACCGCTCTGCCCGTACAGTCCATTTGTTTGGGTTTTTTTGCGCCGCGCG 506 ******************************************* ****** ** **** consensus_8384#0 CAGTGTGTATGTGACTTGGCAGCTTGCATCAAAGCTTGCATCGCTTCGCTTGTACCCAAG 720 consensus_8384#1 CAGTGTGTATGTGAGTTGGCAGCTTGCATCAAAGCTTGCAAATCTTCGCTTGTACCCATG 566 ************** ************************* *************** * consensus_8384#0 CTACCGCCATCTGGCGGGAAGCACGGTGTACTTTACCCCTTTCTGCAGGGGTAACACACG 780 consensus_8384#1 CTACCGCCATCTGGCGGGAAGCACGGTGTACTTTACCCCTTTCTGCAGGGGTAACACACG 626 ************************************************************ consensus_8384#0 GCTTTGTTTTTGCAATAAATATTCGAGT-------------------------------- 808 consensus_8384#1 -CTTTGTTTT-GCAATAAATATTCGAGTTTTGAAATTAAAAAAAAAAAAAAAAAAAAAAA 684 ********* ***************** consensus_8384#0 ---------------------------- consensus_8384#1 AAGGCCACATGTGCCCGAGCTGGTGGGT 712 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||