These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1038 fasta sequence [CAACCTGACACATTACAATATATTTATTGCTTATCAATTAAAGCTGCACCCAATGGCTCGTATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATT-TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA--TTTTTTTT-TGAATTATGATAAACTGCGGACCCCCGGTATGTGCGACCGCTGCCGTTGCCTGCTTTA] [+] EMBL CNS08SL8 [CAACCTGACACATTACAATATATTTATTGCTTATCAATTAAAGCTGCACCCAATGGCTCGTATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACATAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGGGAAATCCCTCGAGCACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA TTTTTTTT TGAATTATGATAAACTGCG ] [+] EMBL CNS08V1C [ CACATTACAATATATTTATTGCTTATCAATTAAAGCTGCACCCAATGGCTCGTATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTTAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGGGAAATCCCTCGAGCACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA T ] [-] EMBL CNS08V1B [ TGCACCCAATGGCTCGTATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATTgtc ] [-] EMBL CNS08SL7 [ ATGGCTCGTATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATTGTCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA TTTTTTTT TGAATTATGATAAACTGCGGACCCCCGGTATGTGCGACCGCTGCCGTTGCCTGCTTTA] [+] EMBL CNS08LS0 [ GGCAGTATTACTCCTTGATTTGAGCCAGCTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGCGGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTTATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCCCGCCTTCCGCAATGTCCCACGGTTTAAGAAACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTA ] [-] EMBL CNS08LRZ [ ATGTTCAGTATCGTTTGAGCCAACGGTTCACAACTGGCGGCTATAATATCTGGCTTCATAATGTCGAACTGTCCTCCTGTGATGCTAATAACCGTGCCGCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTATGCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA TTTTTTTT TGAATTATGATAAACTGCGGACCCCCGGTATGTGCGACCGCTGCCGTTGCa ] [-] EMBL BM637589 [ GGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTTCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGTACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGcgg ] [-] EMBL BX606455 [ AGCGGCGAAACCAAACGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCGTATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTTCGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTTCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGGACATGATGGTACGCTGATAACGTGTTGTAGATTTTTTTTTT TGAATTATGATAAACTGCGTACCCCCGGTATGTGCGACCGCT ] [-] EMBL BX619436 [ ATCCGGGAACCGTTCAGGNATGACCCTTGCCCTTTAATGGCAGTGAATAGCTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAATTGGATCAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGCCGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATCAAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATT TCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGCTGATAACGTGTTGTAGA TTTTTTTTCTGAATTATGATAAACTGCGTACCCCCGGTATGTGCGACTGCTG ] consensusID : consensus_8385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [TGNATAGGCTCATTGGCGTTTGGTTTCGCTATGATTGCGATCTGTAGTTCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGTACGCCTCGCACGAAGTTGACCGTGCCATCAAATTGGATCAAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGGCCAGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTGCCGAAGTCCCGCGATCAAAATGTCCCCACTCCTGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGTACTATTTCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGCTGCCTTTATTTCGTTTTCGTCGCACATGATGTACGCTGATAACGTGTTGTAGATTTTTTTAACCGCGGGGATTCTG] [-] EMBL AL929960 [TGNATAGGCTCATTGGCGTTTGGTTTCGCTATGATTGCGATCTGTAGTTCATGATTGACCGCCAGTGCGACAGAAATACACGTGAAGGTACGCCTCGCACGAAGTTGACCGTGCCATCAAATTGGATCAAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAACGGCCAGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTGCCGAAGTCCCGCGATCAAAATGTCCCCACTCCTGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACCTCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGTACTATTTCGTTACACTGTTTCACCAATTCCAGCGCTGTTTCGAAGCTGCCTTTATTTCGTTTTCGTCGCACATGATGTACGCTGATAACGTGTTGTAGATTTTTTTAACCGCGGGGATTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8385#0 CAACCTGACACATTACAATATATTTATTGCTTATCAATTAAAGCTGCACCCAATGGCTCG 60 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TATACCATTAGTTAGTGCGGTTGTGGAGGGCAGGCAGTATTACTCCTTGATTTGAGCTAG 120 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 CTTCTCATCAACGTCGCGTACTATGTTCAGTATCGTTTGAGCCAACGGTTCACTACTGGC 180 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 GGCTATAATATCTGGCTTCATAATGTCGTACTGTCCTCCTGTGATGCTAATAACCGTGCC 240 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 GCCAGCTTCCTGGATCAGCAGCGCGCCTGCTGCAATGTCCCACGGTTTAAGATACTGTAT 300 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 GCTATAGGCATCGATCTGTCCGCTAGCGATGTATGCTAGTGAGAGAGCGGCGGAACCAAA 360 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 CGCACGCAATCCTACGCACTCCGCGATGAACCTCTGGCCCCGCTCAAACAGGGCCGCCCG 420 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 TATCGGCTTATAGCTTCCGATGGAAAATTCATGTCCCACGAGGGCATCCTTCAGTTCCTT 480 consensus_8385#1 ------------------------------------------------------------ consensus_8385#0 CGTGTTGCGCGTGTGGATCCGGGAACCGTTCAGGAATGACCCTTGCCCTTTAATGGCAGT 540 consensus_8385#1 -----------------------------------------------------------T 1 * consensus_8385#0 GAATAG-CTCATTGGCGGTTGGGTTCGCTATGATTGCGATCTGTAGTCCATGATTGACCG 599 consensus_8385#1 GNATAGGCTCATTGGCGTTTGGTTTCGCTATGATTGCGATCTGTAGTTCATGATTGACCG 61 * **** ********** **** ************************ ************ consensus_8385#0 CCAGTGCGACAGAAATACACGTGAAGGGTACGCCTCGCACGAAGTTGACCGTGCCATCAA 659 consensus_8385#1 CCAGTGCGACAGAAATACACGTGAAGG-TACGCCTCGCACGAAGTTGACCGTGCCATCAA 120 *************************** ******************************** consensus_8385#0 -TTGGATCAA-TTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAA 717 consensus_8385#1 ATTGGATCAAATTATCCACGTTGGCTCCGGTCCGAGAATCAGCTTGGCTCCACTAGCGAA 180 ********* ************************************************* consensus_8385#0 CGCC--GATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGTTGCCGAAGTCCCGCGATC 775 consensus_8385#1 CGGCCAGATTCTTCTGCGCAAAATTTGTGATGTGGAAACTGT-GCCGAAGTCCCGCGATC 239 ** * ************************************ ***************** consensus_8385#0 AAAATGTCCTCCACTCGCTGGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACC 835 consensus_8385#1 AAAATGTCC-CCACT--CCTGTCGTACACGGTCACCAGATCCCAATGTTTACCTTTCACC 296 ********* ***** * **************************************** consensus_8385#0 TCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGCACTATTTCGTTACACTGTTTCACC 895 consensus_8385#1 TCCACCTGCTTAGAAGCGGAGCGAAATCCCTCGAGTACTATTTCGTTACACTGTTTCACC 356 *********************************** ************************ consensus_8385#0 AATTCCAGCGCTGTTTCGAAGGCTGCCTTTATTTCGTTTTCGTCGCACATGATGGTACGC 955 consensus_8385#1 AATTCCAGCGCTGTTTCGAAG-CTGCCTTTATTTCGTTTTCGTCGCACATGATG-TACGC 414 ********************* ******************************** ***** consensus_8385#0 TGATAACGTGTTGTAGATTTTTTTTTGAATTATGATAAACTGCGGACCCCCGGTATGTGC 1015 consensus_8385#1 TGATAACGTGTTGTAGATTTTTTT---AACCGCGG-GGATTCTG---------------- 454 ************************ ** * * * * consensus_8385#0 GACCGCTGCCGTTGCCTGCTTTA 1038 consensus_8385#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||