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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1462 fasta sequence
[CCGCCCACGCGTCCCCGCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT-G-AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG-CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATAAACATAAACACTA--TCTCT--CTGTCTCACGCTCTATCATACACATACTGTTTCCGCGTAGAACGAAGACCAAACGAAGCAATGTTTTGCGAACGGAAGGATGTAGCGTAGCGAACTCACCCAGCTGTCCTAGCGCAAACTAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGTACAATCGAGCATTTCGTTCGATGCTTGCGAACACCTGTGTGGAACCATCAGTGGATTTAAATGAGCGCTTTCGGATTTTGCTTTTGTTTGCGCAATGCGCAACAGGCGGCTGCGACGCCACT-GGTTGTCGCCGTGGTGACTTTGCGTCACTCGCGCCTAAATCGCTGCAATCGGTTTCGCACGCCGCTGTAGTGAAGCTTTTTTTGTAAGCTTGCTGCCACTGTCGGAGCCGAAGCGATTGGGTCAGCCCATCCCCTCTTCATCAATATTCCTTCCCTTCGGGAGCTTCTATACAGCTCGTTTCTGGTCTTGCCGGTTGCAGCCACCACTCAAGGTTGTAACCGACATTTCTAATGATCTTCTAGCCTCATCCTCCCTCACCTGGGTACGGGGATCTTACAATGTAGCCAGCCCCTTCCCAAGGATGTGTTGATATTGTGTGTACACCAACGCACACACACACACACACTCTATCTCTCTGTGATCTGTTACCGCTACTGTTACTTACTTTACTTACTTTACTACTACCATCGTTACTACTTGCTATTTGCTGCACAATGCACTGGCAGGGCACCGATCCTGCTGGTAGTCAGGCGCTTTCCTCCAAGCAGCGTTGGCAGCGAAATGCACGAAAATCGTGCTACCTCCTTCCGCTCCGATCCGAGCCCCTGAGCGCCAATGAGGA]
[+] EMBL BM642322 [CCGCCCACGCGTCCGCACTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCA TTCATCTTCAGCACATTACAGTTGCAGTATACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCTATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGTCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTACGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT G AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCACGCCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATACACATAAACACTA TCTCTCCCTGTCTTACGCTCTATCATACACAAACTGTTTCCGCGTAGAACGAAGACCAAACGAAGCAA ]
[+] EMBL BM652608 [ CCGCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCA TTCATCTTCAGCACAGTACAGTTGCAGTATACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCATACCCGAAGTACTCGTTCAACTACGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTTGG AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCGCCCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCACGCCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATACACATAAACACTATCTCTCT CTGTCTCACGCTCTACCATACACATACTGTTTCCGCGTAGAACGAAGACCAAACGAAGCAATGTTTTGCGAACGGAAGGATGTAGCGTAGCGAACTCACCCAGCTGTCCTAGCGCAA ]
[+] EMBL BM644610 [ CCGCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT G AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATAAACATAAACACTA TCTCT CTGTCTCACGCTCTATCATACA ]
[+] EMBL BM655211 [ CCGCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT GCAGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATAAACATAAACACT ]
[+] EMBL BM657791 [ ccgctcaCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT G AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATAAACATAAACACTA TCTCT CTGTCTCACGCTCTATCATACACATACTGTTTCCGCGTAGAACGAAGACCAAACGAAGCAATGTTTTGCGAACGGAAGGATGT ]
[+] EMBL BX614257 [ AAGCGGTACAGACACATCGTTCCCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT G AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACA ]
[+] EMBL BM656181 [ ccgCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT G AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATAAACATAAACACTA TCTCT CTGTCTCACGCTCTATCATACACATACTGTTTCCGCGTAGAACGAAGACCAAACGAAGCAATGTTTTGCGAACGGAAGGATGTAGCGTAGCG ACTCACCCAGCTGTCCTAGCGCCTACTAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGTACAATCGAGCATTTCGTTCGATGCTTGCGAACACCTGTGTGGAACCATCAGTGGATTTAAATGAGCGCTTTCGGATTTTGCTTTTGTTTGCGCAATGCGCAACAGGCGGCTGCGACGCCACTGGGTTGTCGCCGTGGTGACTTTGCGTCACTCGCGCCTAAATCGCTGCAATC ]
[+] EMBL BX613530 [ GACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGTACAATCGAGCATTTCGTTCGATGCTTGCGAACACCTGTGTGGAACCATCAGTGGATTTAAATGAGCGCTTTCGGA TTTGCTTTTGTTTGCGCAATGCGCAACAGGCGGCTGCGACGCCACT GGTTGTCGCCGTGGTGACTTTGCGTCACTCGCGCCTAAATCGCTGCAATCGGTTTCGCACGCCGCTGTAGTGAAGCTTTTTTTGTAAGCTTGCTGCCACTGTCGGAGCCGAAGCGATTGGGTCAGCCCATCCCCTCTTCATCAATATTCCTTCCCTTCGGGAGCTTCTATACAGCTCGTTTCTGGTCTTGCCGGTTGCAGCCACCACTCAAGGTTGTAACCGACATTTCTAATGATCTTCTAGCCTCATCCTCCCTCACCTGGGTACGGGGATCTTACAATGTAGCCAGCCCCTTCCCAAGGATGTGTTGATATTGTGTGTACACCAACGCACACACACACACACACTCTATCTCTCTGTGATCTGTTACCGCTACTGTTACTTACTTTACTTACTTTACTACTACCATCGTTACTACTTGCTATTTGCTGCACAATGCACTGGCAGGGCACCGATCCTGCTGGTAGTCAGGCGCTTTCCTCCAAGCAGCGTTGGCAGCGAAATGCACGAAAATCGTGCTACCTCCTTCCGCTCCGATCCGAGCCCCTGAGCGCCAATGAGGA]
[+] EMBL BX614324 [ GCAACAGGCGGCTGCGACGCCACT GGTTGTCGCCGTGGTGACTTTGCGTCACTCGCGCCTAAATCGCTGCAATCGGTTTCGCACGCCGCTGTAGTGAAGCTTTTTTTGTAAGCTTGCTGCCACTGTCGGAGCCGAAGCGATTGGGTCAGCCCATCCCCTCTTCATCAATATTCCTTCCCTTCGGGAGCTTCTATACAGCTCGTTTCTGGTCTTGCCGGTTGCAGCCACCACTCAAGGTTGTAACCGACATTTCTAATGATCTTCTAGCCTCATCCTCCCTCACCTGGGTACGGGGA ]
consensusID : consensus_8386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 82 fasta sequence
[AGGAGGTAGCGAAGCGACTCACCCAGCTGTCCTAGCGCCTACAAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGT]
[+] EMBL BX608020 [AGGAGGTAGCGAAGCGACTCACCCAGCTGTCCTAGCGCCTACAAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8386#0 CCGCCCACGCGTCCCCGCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTC 60
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 CCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGT 120
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 GCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCC 180
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 ACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGC 240
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 ACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACC 300
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 CGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCC 360
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 AGTACTCGCTGGTTGAGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACC 420
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 ACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCGCCG 480
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 CCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATA 540
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 CCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATA 600
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 AACATAAACACTATCTCTCTGTCTCACGCTCTATCATACACATACTGTTTCCGCGTAGAA 660
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 CGAAGACCAAACGAAGCAATGTTTTGCGAACGGAAGGATGTAGCGTAGCGAACTCACCCA 720
consensus_8386#1 ----------------------------------AGGAGGTAGCGAAGCGA-CTCACCCA 25
**** ****** ***** ********
consensus_8386#0 GCTGTCCTAGCGCAAACTAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGTACA 780
consensus_8386#1 GCTGTCCTAGCGCCTACAAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGT--- 82
************* ** ***************************************
consensus_8386#0 ATCGAGCATTTCGTTCGATGCTTGCGAACACCTGTGTGGAACCATCAGTGGATTTAAATG 840
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 AGCGCTTTCGGATTTTGCTTTTGTTTGCGCAATGCGCAACAGGCGGCTGCGACGCCACTG 900
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 GTTGTCGCCGTGGTGACTTTGCGTCACTCGCGCCTAAATCGCTGCAATCGGTTTCGCACG 960
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 CCGCTGTAGTGAAGCTTTTTTTGTAAGCTTGCTGCCACTGTCGGAGCCGAAGCGATTGGG 1020
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 TCAGCCCATCCCCTCTTCATCAATATTCCTTCCCTTCGGGAGCTTCTATACAGCTCGTTT 1080
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 CTGGTCTTGCCGGTTGCAGCCACCACTCAAGGTTGTAACCGACATTTCTAATGATCTTCT 1140
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 AGCCTCATCCTCCCTCACCTGGGTACGGGGATCTTACAATGTAGCCAGCCCCTTCCCAAG 1200
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 GATGTGTTGATATTGTGTGTACACCAACGCACACACACACACACACTCTATCTCTCTGTG 1260
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 ATCTGTTACCGCTACTGTTACTTACTTTACTTACTTTACTACTACCATCGTTACTACTTG 1320
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 CTATTTGCTGCACAATGCACTGGCAGGGCACCGATCCTGCTGGTAGTCAGGCGCTTTCCT 1380
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 CCAAGCAGCGTTGGCAGCGAAATGCACGAAAATCGTGCTACCTCCTTCCGCTCCGATCCG 1440
consensus_8386#1 ------------------------------------------------------------
consensus_8386#0 AGCCCCTGAGCGCCAATGAGGA 1462
consensus_8386#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||