Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8395 cluster # 8395       Sequences # 10       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8395#0 length = 1628 sequences # 5  
consensus_8395#1 length = 684 sequences # 1  
consensus_8395#2 length = 656 sequences # 1  
consensus_8395#3 length = 643 sequences # 2  
consensus_8395#4 length = 125 sequences # 1  

consensusID : consensus_8395#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1628
fasta sequence
                              [TTTTTTTGCTACAAAATTAAAATATTTTATTTGAATAACACAGCTAATACAGTACTTAAAAAAAGAGTCGACTGTTTAAAATTTGCTATAAACACGGTGTACAAATAGTGTCGCCCTTCTTGTCCCCATCTAATAGCATGTATTCTGCACGTGTGTACCAGAATGTGCGTTTGCTTTTCATTATGTTATGCCCAAACTATCAAGCACCTCGGGAATGAGAGATCGTTGCACTCGTAGTGCACCTTCCTACGGTACAATCTTTACAGCCGCTGTTGCTGGAATCGGTCCCGATTGCGTAGTTTCTTTGTGCAAACGTAAATTGAGCTAGCGATCAGCACAACCAGCGGTACTCCGATCCCGATGCCGGCCACAATCAGCACGAATGCGGACAGCTCCTCGACCGGTGGCATTCCGTACCCAACCTGGAAGGTCATGGTGGTGTAGTTGGTCTTGCGATAGAAGCCATCCTCGCTGACGCCGAACGAAACATTCATGCCCTGCACTAGATAGCTGTCCAGCTTGTTACCGTACAGTGCGTACGCCAGAGTGGTTTGCAGCACGGCCGACGGGGACCGTACACTGATCGGCTGACTTTGCCGCGTTTCGGTCGAGGTGGCCACATCTCGTTCCGGGTGGGTGTAGGAAACGGGACGATACTCGATGTAGCCACCGGCTGAAAAAGTGAAAGCTCCCGGTGATAGTACGTCAACGATTTCGAAGATGCCCGGCGTGTGCTCGTCATCCAACGTTTTGCGTTTCGTGACCTCAAACTCCGATCCGACAACGGCTTGCTCTGAGACGACAAACAGTAGCTCTATCGCGAACCGTGGATTGGCGAAACGGTTCGTTATGTTGTTAAACACGATGTCAATTTGGGTGGAGTTGGAAGTGTGTAACAGATGTGGAAAGTCCATGCCATGATCTTTCGTCGAGTAGGCATTCAACTTGAACAGGAAATCATCGCCCGCATTTATCGCCATCATGACGCCCTCCTCGTTCGACCATAGTAGGCTCCGGTTCCAGATGAAGTTGTGTGGGTCGTAAACGAATGCATTCGTACCCTCATCCAGCATTGCTCGATCGTCGGCATCATTGTATTGAAAAATCCGATTGATAATCGCCATGAACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGTTTTGCTCTCCATCAACCTGGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGCACTGACACAACAAAGCCTAAGGGCGAAATCCATGTATGCTTGTTTGCCGATACCATCTTTACTAAAATCACAAGCTAGTGCGTGTTTAAACACTCCCGCTTGGTGACGTTAACACCACAAAAAGATAAAAATACGTATTTGATCGCTATCCTAAAAAAGAAGGCACTTTAATTTCTCCACTGAACCGAGCGCAACCAATAGCACCGTCA]

[+] EMBL AGA281362            [TTTTTTTGCTACAAAATTAAAATATTTTATTTGAATAACACAGCTAATACAGTACTTAAAAAAAGAGTCGACTGTTTAAAATTTGCTATAAACACGGTGTACAAATAGTGTCGCCCTTCTTGTCCCCATCTAATAGCATGTATTCTGCACGTGTGTACCAGAATGTGCGTTTGCTTTTCATTATGTTATGCCCAAACTATCAAGCACCTCGGGAATGAGAGATCGTTGCACTCGTAGTGCACCTTCCTACGGTACAATCTTTACAGCCGCTGTTGCTGGAATCGGTCCCGATTGCGTAGTTTCTTTGTGCAAACGTAAATTGAGCTAGCGATCAGCACAACCAGCGGTACTCCGATCCCGATGCCGGCCACAATCAGCACGAATGCGGACAGCTCCTCGACCGGTGGCATTCCGTACCCAACCTGGAAGGTCATGGTGGTGTAGTTGGTCTTGCGATAGAAGCCATCCTCGCTGACGCCGAACGAAACATTCATGCCCTGCACTAGATAGCTGTCCAGCTTGTTACCGTACAGTGCGTACGCCAGAGTGGTTTGCAGCACGGCCGACGGGGACCGTACACTGATCGGCTGACTTTGCCGCGTTTCGGTCGAGGTGGCCACATCTCGTTCCGGGTGGGTGTAGGAAACGGGACGATACTCGATGTAGCCACCGGCTGAAAAAGTGAAAGCTCCCGGTGATAGTACGTCAACGATTTCGAAGATGCCCGGCGTGTGCTCGTCATCCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL BX617709             [                                                                                                                                                                                                                                                                                                                                                                                                                                         GAAGGTCATGGTGGTGTAGTTGGTCTTGCGATAGAAGCCATCCTCGCTGACGCCGAACGAAACATTCATGCCCTGCACTAGATAGCTGTCCAGCTTGTTACCGTACAGTGCGTACGCCAGAGTGG TTGCAGCACGGCCGACGGGGACCGTACACTGATCGGCTGACTTTGCCGCGTTTCGGTCGAGGTGGCCACATCTCGTTCCGGGTGGGTGTAGGAAACGGGACGATACTCGATGTAGCCACCGGCTGAAAAAGTGAAAGCTCCCGGTGATAGTACGTCAACGATTTCGAAGATGCCCGGCGTGTGCTCGTCATCCAACGTTTTGCGTTTCGTGACCTCAAACTCCGATCCGACAACGGCTTGCTCTGAGACGACAAACAGTAGCTCTATCGCGAACCGTGGATTGGCGAAACGGTTCGTTATGTTGTTAAACACGATGTCAATTTGGGTGGAGTTGGAAGTGTGTAACAGATGTGGAAAGTCCATGCCATGATCTTTCGTCGAGTAGGCATTCAACTTGAACAGGAAATCATCGCCCGCATTTATCGCCATCATGACGCCCTCCTCGTTCGACCATAGTAGGCTCCGGTTCCAGATGAAGTTGTGTGGGTCGTAAACGAATGCATTCGTACCCTCATCCAGCATTGCTCGATCGTCGGCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL BX602179             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATCGCCATCATGACGCCCTCCTCGTTCGACCATAGTAGGCTCCGGTTCCAGATGAAGTTGTGTGGGTCGTAAACGAATGCATTCGTCCCCTCATCCAGCATTGCTCGATCGTCGGCATCATTGTATTGAAAAATCCGATTGATAATCGCCATGAACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGTTTTGCTCTCCATCAACCTGGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGCACTGACACAACAAAGCCTAAGGGCGAAATCCATGTATGCTTGTTTGCCGATACCATCTTTACTAAAATCACAAGCTAGTGCGTGTTTAAACACTCCCGCTTGGTGACGTTAACACCACAAAAAGATAAAAATACGTATTTGATCGCTATCCTAAAAAAGAAGGCACTTTAATTTCTCCACTGAACCGAGCGCAACCAATAGCACC    ]
[-] EMBL BX604470             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGGTGCCTCGGTAAATCGTACGGATCCCGTTTTGCTCTCCATCAACCTGGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGCACTGACACAACAAAGCCTAAGGGCGAAATCCATGTATGCTTGTTTGCCGATACCATCTTTACTAAAATCACAAGCTAGTGCGTGTTTAAACACTCCCGCTTGGTGACGTTAACACCACAAAAAGATAAAAATACGTATTTGATCGCTATCCTAAAAAAGAAGGCACTTTAATTTCTCCACTGAACCGAGCGCAACCAATAGCACCGTCA]
[-] EMBL AGA282969            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGCACTGACACAACAAAGCCTAAGGGCGAAATCCATGTATGCTTGTTTGCCGATACCATCTTTACTAAAATCACAAGCTAGTGCGTGTTTAAACACT                                                                                                                   ]


>consensus_8395#0 TTTTTTTGCTACAAAATTAAAATATTTTATTTGAATAACACAGCTAATACAGTACTTAAA AAAAGAGTCGACTGTTTAAAATTTGCTATAAACACGGTGTACAAATAGTGTCGCCCTTCT TGTCCCCATCTAATAGCATGTATTCTGCACGTGTGTACCAGAATGTGCGTTTGCTTTTCA TTATGTTATGCCCAAACTATCAAGCACCTCGGGAATGAGAGATCGTTGCACTCGTAGTGC ACCTTCCTACGGTACAATCTTTACAGCCGCTGTTGCTGGAATCGGTCCCGATTGCGTAGT TTCTTTGTGCAAACGTAAATTGAGCTAGCGATCAGCACAACCAGCGGTACTCCGATCCCG ATGCCGGCCACAATCAGCACGAATGCGGACAGCTCCTCGACCGGTGGCATTCCGTACCCA ACCTGGAAGGTCATGGTGGTGTAGTTGGTCTTGCGATAGAAGCCATCCTCGCTGACGCCG AACGAAACATTCATGCCCTGCACTAGATAGCTGTCCAGCTTGTTACCGTACAGTGCGTAC GCCAGAGTGGTTTGCAGCACGGCCGACGGGGACCGTACACTGATCGGCTGACTTTGCCGC GTTTCGGTCGAGGTGGCCACATCTCGTTCCGGGTGGGTGTAGGAAACGGGACGATACTCG ATGTAGCCACCGGCTGAAAAAGTGAAAGCTCCCGGTGATAGTACGTCAACGATTTCGAAG ATGCCCGGCGTGTGCTCGTCATCCAACGTTTTGCGTTTCGTGACCTCAAACTCCGATCCG ACAACGGCTTGCTCTGAGACGACAAACAGTAGCTCTATCGCGAACCGTGGATTGGCGAAA CGGTTCGTTATGTTGTTAAACACGATGTCAATTTGGGTGGAGTTGGAAGTGTGTAACAGA TGTGGAAAGTCCATGCCATGATCTTTCGTCGAGTAGGCATTCAACTTGAACAGGAAATCA TCGCCCGCATTTATCGCCATCATGACGCCCTCCTCGTTCGACCATAGTAGGCTCCGGTTC CAGATGAAGTTGTGTGGGTCGTAAACGAATGCATTCGTACCCTCATCCAGCATTGCTCGA TCGTCGGCATCATTGTATTGAAAAATCCGATTGATAATCGCCATGAACGTGTACTGCGGT GCCTCGGTAAATCGTACGGATCCCGTTTTGCTCTCCATCAACCTGGGCCAATCGATGTGG AATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCAC ACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGGCTGTG TTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAAT TTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGCACTGACACAACAAAGCCTAAG GGCGAAATCCATGTATGCTTGTTTGCCGATACCATCTTTACTAAAATCACAAGCTAGTGC GTGTTTAAACACTCCCGCTTGGTGACGTTAACACCACAAAAAGATAAAAATACGTATTTG ATCGCTATCCTAAAAAAGAAGGCACTTTAATTTCTCCACTGAACCGAGCGCAACCAATAG CACCGTCA



consensusID : consensus_8395#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence
                              [TCGAGTAGGCATTCAACTTGAACAGGAAATCATCGCCCGCATTTATCGCCATCATGACGCCCTCCTCGTTCGACCACAGTAGGCTCCGGTTCCAGATGAAGTTGTGTGGGTCGTAAACGAATGCATTCGTCCCCTCATCCAGCATTGCTCGATCTTCGGCATCATTGTATTGAAAAATCCGATTGATAATCGCCATGAACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGTTTTGCTCTCCATCAACCTGGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGTACTGACACAACAAAGCCTAAGGGAGAAATCCATGTATGCTTGTTTGCCGATACCATTTTTACTAAAATCACAAGCTAGTGCGTGTTTAAACACTTCCGCTTGGTGACGTTAACACCACAAAAAGATTAAAATATGTATTTGATCGCAATCCTAAAAAAGAAGGCACTTTAATTTCTCCCCCACGCGTCCGCGG]

[-] EMBL BM586883             [TCGAGTAGGCATTCAACTTGAACAGGAAATCATCGCCCGCATTTATCGCCATCATGACGCCCTCCTCGTTCGACCACAGTAGGCTCCGGTTCCAGATGAAGTTGTGTGGGTCGTAAACGAATGCATTCGTCCCCTCATCCAGCATTGCTCGATCTTCGGCATCATTGTATTGAAAAATCCGATTGATAATCGCCATGAACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGTTTTGCTCTCCATCAACCTGGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGTACTGACACAACAAAGCCTAAGGGAGAAATCCATGTATGCTTGTTTGCCGATACCATTTTTACTAAAATCACAAGCTAGTGCGTGTTTAAACACTTCCGCTTGGTGACGTTAACACCACAAAAAGATTAAAATATGTATTTGATCGCAATCCTAAAAAAGAAGGCACTTTAATTTCTCCCCCACGCGTCCGCGG]


>consensus_8395#1 TCGAGTAGGCATTCAACTTGAACAGGAAATCATCGCCCGCATTTATCGCCATCATGACGC CCTCCTCGTTCGACCACAGTAGGCTCCGGTTCCAGATGAAGTTGTGTGGGTCGTAAACGA ATGCATTCGTCCCCTCATCCAGCATTGCTCGATCTTCGGCATCATTGTATTGAAAAATCC GATTGATAATCGCCATGAACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGTTT TGCTCTCCATCAACCTGGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCA CCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACG TGGCCGCAATATGCACCAGTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAG GATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGT TTAGAAGCAGTACTGACACAACAAAGCCTAAGGGAGAAATCCATGTATGCTTGTTTGCCG ATACCATTTTTACTAAAATCACAAGCTAGTGCGTGTTTAAACACTTCCGCTTGGTGACGT TAACACCACAAAAAGATTAAAATATGTATTTGATCGCAATCCTAAAAAAGAAGGCACTTT AATTTCTCCCCCACGCGTCCGCGG



consensusID : consensus_8395#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence
                              [TCATCGCCCGCATTAATGCGCCATTCAGTGACGTCCTCCCTCGTTTCGACCATAGTAGGTCTCCGGTTCCAGATGAAGTTTGTGTGGGTTCGTAAACGAANGCATTCGTCCCCTCATCCAGCATTGCTCGATCGTCCGGCATCACTTGCTATTGCAAAAATCCGATTTGATAACTCGCCATGAACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGGTTTGCTCTCCATCAACCTGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGCCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGCACTGACACAACAAAGCCTAAGGGCGAAATCCATGTATGCTTGTTTGCCGATACCATTTTTACTAAAATCACAAGCTTGGTGACGTTAACACCACAAAAAGATTAAAATATGTATTTAATCGCAATCCCTAAAAAAGAAGGCACTTAATTTCTCGACTGAACTGCNNCCTCGTGGCCGATCT]

[-] EMBL BX469523             [TCATCGCCCGCATTAATGCGCCATTCAGTGACGTCCTCCCTCGTTTCGACCATAGTAGGTCTCCGGTTCCAGATGAAGTTTGTGTGGGTTCGTAAACGAANGCATTCGTCCCCTCATCCAGCATTGCTCGATCGTCCGGCATCACTTGCTATTGCAAAAATCCGATTTGATAACTCGCCATGAACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGGTTTGCTCTCCATCAACCTGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGCCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGCACTGACACAACAAAGCCTAAGGGCGAAATCCATGTATGCTTGTTTGCCGATACCATTTTTACTAAAATCACAAGCTTGGTGACGTTAACACCACAAAAAGATTAAAATATGTATTTAATCGCAATCCCTAAAAAAGAAGGCACTTAATTTCTCGACTGAACTGCNNCCTCGTGGCCGATCT]


>consensus_8395#2 TCATCGCCCGCATTAATGCGCCATTCAGTGACGTCCTCCCTCGTTTCGACCATAGTAGGT CTCCGGTTCCAGATGAAGTTTGTGTGGGTTCGTAAACGAANGCATTCGTCCCCTCATCCA GCATTGCTCGATCGTCCGGCATCACTTGCTATTGCAAAAATCCGATTTGATAACTCGCCA TGAACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGGTTTGCTCTCCATCAACC TGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTT GCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCAC CAGTGTGATGCCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGT TAGTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGCACTGA CACAACAAAGCCTAAGGGCGAAATCCATGTATGCTTGTTTGCCGATACCATTTTTACTAA AATCACAAGCTTGGTGACGTTAACACCACAAAAAGATTAAAATATGTATTTAATCGCAAT CCCTAAAAAAGAAGGCACTTAATTTCTCGACTGAACTGCNNCCTCGTGGCCGATCT



consensusID : consensus_8395#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 643
fasta sequence
                              [TCGCCATCATGACGTCCTCCTCGTTCGACCATAGTAGGCTCCGGTTCCAGATGAAGTTGTGTGGGTCGTAAACGAATGCATTCGTCCCCTCATCCAGCATTGCTCGATCGTCGGCATCATTGTATTGAAAAATCCGATTGATAATCGCCATGAACGTGTA-CTGCGGTGCCTCGGTAAATCGTACGGATCCCGGTTTGCTCTCCATCAACCTGGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCT--CAT--CACAA-A-GGGCAACGTTTAGAAGCAGCACTGACACAACAAAGCCTAAGGGCGAAATCCATG-TATGCTT-GTTTG--CCGATACCATTT-TTACTAAAATCACAAGCTTGGTGACGTTAA-CAC-CACAAAAA---GA--TTAAAATATGTATTTAATCGCAATCCTAAAAAAGAAGGCACTTTAATTTCTCGACTGAAC-CGAGCGCAACCAATAGCACCGTCACTCGCTCGCCGG]

[-] EMBL BM587959             [TCGCCATCATGACGTCCTCCTCGTTCGACCATAGTAGGCTCCGGTTCCAGATGAAGTTGTGTGGGTCGTAAACGAATGCATTCGTCCCCTCATCCAGCATTGCTCGATCGTCGGCATCATTGTATTGAAAAATCCGATTGATAATCGCCATGAACGTGTA CTGCGGTGCCTCGGTAAATCGTACGGATCCCGGTTTGCTCTCCATCAACCTGGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCT  CAT  CACAA A GGGCAACGTTTAGAAGCAGCACTGACACAACAAAGCCTAAGGGCGAAATCCATG TATGCTT GTTTG  CCGATACCATTT TTACTAAAATCACAAGCTTGGTGACGTTAA CAC CACAAAAA   GA  TTAAAATATGTATTTAATCGCAATCCTAAAAAAGAAGGCACTTTAATTTCTCGACTGAAC CGAGCGCAACCAATAGCACCGTCACTCGCTCGCCGG]
[-] EMBL AL933440             [                                                                                                                          TATTGAAAAATCCGATTGATAATCGCCATGAACGTGTATCTGCGGTGCCTCGGTAAATCGTACGGATCCCGGTTTGCTCTCCATCAACCTGGGCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCTACCAGAATGGTAGGC TGCCGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATCTTCTGGGCTTCCATTCCACAATAGGGGCAACGTTTAGAAGCAGCACTGACACAACAAAGCCTAAGGGCGAAATCCATGTTATGCTTGGTTTGCCCCGATACCATTTGTTACTAAAATCACAAGCTTGGTGACGTTAACCACTCACAAAAAAAGGAATTTAAAATATGTATTTAATCGCAATCCT AAAAAGAA GCAC TTAATTTCTCGACTGAACGCGAGCGCAACNAAactcgg                 ]


>consensus_8395#3 TCGCCATCATGACGTCCTCCTCGTTCGACCATAGTAGGCTCCGGTTCCAGATGAAGTTGT GTGGGTCGTAAACGAATGCATTCGTCCCCTCATCCAGCATTGCTCGATCGTCGGCATCAT TGTATTGAAAAATCCGATTGATAATCGCCATGAACGTGTACTGCGGTGCCTCGGTAAATC GTACGGATCCCGGTTTGCTCTCCATCAACCTGGGCCAATCGATGTGGAATTCGGCCTGCT TGCTAGTTAGTGCCACCAGAATGGTAGGCTTGCCGGTAAAATCCCACACATAATGGATCG TGTCCGTGTCGGACGTGGCCGCAATATGCACCAGTGTGATGGCTGTGTTATTTTCGCAGA ATTCTCTGCAACCAGGATTCAGCGTAGCAGTTAGTTTTCGCTGTAATTTGCTGGGCTCAT CACAAAGGGCAACGTTTAGAAGCAGCACTGACACAACAAAGCCTAAGGGCGAAATCCATG TATGCTTGTTTGCCGATACCATTTTTACTAAAATCACAAGCTTGGTGACGTTAACACCAC AAAAAGATTAAAATATGTATTTAATCGCAATCCTAAAAAAGAAGGCACTTTAATTTCTCG ACTGAACCGAGCGCAACCAATAGCACCGTCACTCGCTCGCCGG



consensusID : consensus_8395#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 125
fasta sequence
                              [AGCGTCAGTCGAGAATAAGTGCTCTTTTAGGATTGCGATTAATACATATTTTAATCTTTTGTGGTGTTAACGTCACCAAGCTTGTGATTTTAGTAAAAATGGTATCGGCAACAAGGCATACATGG]

[+] EMBL AL932409             [AGCGTCAGTCGAGAATAAGTGCTCTTTTAGGATTGCGATTAATACATATTTTAATCTTTTGTGGTGTTAACGTCACCAAGCTTGTGATTTTAGTAAAAATGGTATCGGCAACAAGGCATACATGG]


>consensus_8395#4 AGCGTCAGTCGAGAATAAGTGCTCTTTTAGGATTGCGATTAATACATATTTTAATCTTTT GTGGTGTTAACGTCACCAAGCTTGTGATTTTAGTAAAAATGGTATCGGCAACAAGGCATA CATGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8395#0      TTTTTTTGCTACAAAATTAAAATATTTTATTTGAATAACACAGCTAATACAGTACTTAAA 60
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      AAAAGAGTCGACTGTTTAAAATTTGCTATAAACACGGTGTACAAATAGTGTCGCCCTTCT 120
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      TGTCCCCATCTAATAGCATGTATTCTGCACGTGTGTACCAGAATGTGCGTTTGCTTTTCA 180
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      TTATGTTATGCCCAAACTATCAAGCACCTCGGGAATGAGAGATCGTTGCACTCGTAGTGC 240
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      ACCTTCCTACGGTACAATCTTTACAGCCGCTGTTGCTGGAATCGGTCCCGATTGCGTAGT 300
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      TTCTTTGTGCAAACGTAAATTGAGCTAGCGATCAGCACAACCAGCGGTACTCCGATCCCG 360
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      ATGCCGGCCACAATCAGCACGAATGCGGACAGCTCCTCGACCGGTGGCATTCCGTACCCA 420
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      ACCTGGAAGGTCATGGTGGTGTAGTTGGTCTTGCGATAGAAGCCATCCTCGCTGACGCCG 480
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      AACGAAACATTCATGCCCTGCACTAGATAGCTGTCCAGCTTGTTACCGTACAGTGCGTAC 540
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      GCCAGAGTGGTTTGCAGCACGGCCGACGGGGACCGTACACTGATCGGCTGACTTTGCCGC 600
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      GTTTCGGTCGAGGTGGCCACATCTCGTTCCGGGTGGGTGTAGGAAACGGGACGATACTCG 660
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      ATGTAGCCACCGGCTGAAAAAGTGAAAGCTCCCGGTGATAGTACGTCAACGATTTCGAAG 720
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      ATGCCCGGCGTGTGCTCGTCATCCAACGTTTTGCGTTTCGTGACCTCAAACTCCGATCCG 780
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      ACAACGGCTTGCTCTGAGACGACAAACAGTAGCTCTATCGCGAACCGTGGATTGGCGAAA 840
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      CGGTTCGTTATGTTGTTAAACACGATGTCAATTTGGGTGGAGTTGGAAGTGTGTAACAGA 900
consensus_8395#1      ------------------------------------------------------------
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ------------------------------------------------------------
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      TGTGGAAAGTCCATGCCATGATCTTTCGTCGAGTAGGCATTCAACTTGAACAGGAAATCA 960
consensus_8395#1      ----------------------------TCGAGTAGGCATTCAACTTGAACAGGAAATCA 32
consensus_8395#3      ------------------------------------------------------------
consensus_8395#2      ---------------------------------------------------------TCA 3
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      TCGCCCGCATTTAT-CGCCATC--ATGACGCCCTCC-TCGTT-CGACCATAGTAGG-CTC 1014
consensus_8395#1      TCGCCCGCATTTAT-CGCCATC--ATGACGCCCTCC-TCGTT-CGACCACAGTAGG-CTC 86
consensus_8395#3      -------------T-CGCCATC--ATGACGTCCTCC-TCGTT-CGACCATAGTAGG-CTC 41
consensus_8395#2      TCGCCCGCATTAATGCGCCATTCAGTGACGTCCTCCCTCGTTTCGACCATAGTAGGTCTC 63
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      CGGTTCCAGATGAAGTT-GTGTGGGT-CGTAAACGAATGCATTCGTACCCTCATCCAGCA 1072
consensus_8395#1      CGGTTCCAGATGAAGTT-GTGTGGGT-CGTAAACGAATGCATTCGTCCCCTCATCCAGCA 144
consensus_8395#3      CGGTTCCAGATGAAGTT-GTGTGGGT-CGTAAACGAATGCATTCGTCCCCTCATCCAGCA 99
consensus_8395#2      CGGTTCCAGATGAAGTTTGTGTGGGTTCGTAAACGAANGCATTCGTCCCCTCATCCAGCA 123
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      TTGCTCGATCGTC-GGCATCATTG--TATTG-AAAAATCCGATT-GATAA-TCGCCATGA 1126
consensus_8395#1      TTGCTCGATCTTC-GGCATCATTG--TATTG-AAAAATCCGATT-GATAA-TCGCCATGA 198
consensus_8395#3      TTGCTCGATCGTC-GGCATCATTG--TATTG-AAAAATCCGATT-GATAA-TCGCCATGA 153
consensus_8395#2      TTGCTCGATCGTCCGGCATCACTTGCTATTGCAAAAATCCGATTTGATAACTCGCCATGA 183
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      ACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGTTTTGCTCTCCATCAACCTGG 1186
consensus_8395#1      ACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGTTTTGCTCTCCATCAACCTGG 258
consensus_8395#3      ACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGGTTTGCTCTCCATCAACCTGG 213
consensus_8395#2      ACGTGTACTGCGGTGCCTCGGTAAATCGTACGGATCCCGGTTTGCTCTCCATCAACCTGG 243
consensus_8395#4      ------------------------AGCGT-CAGTCGAGAATAAGTGCTCTTTTAGGATTG 35
                                              * *** * *       *  *  ***  * *   * *

consensus_8395#0      GCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGC 1246
consensus_8395#1      GCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGC 318
consensus_8395#3      GCCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGC 273
consensus_8395#2      -CCAATCGATGTGGAATTCGGCCTGCTTGCTAGTTAGTGCCACCAGAATGGTAGGCTTGC 302
consensus_8395#4      --CGATTAATACATATTTTAATCTTTTGTGGTGTTAACGTCACCAAGCTTGTGATTTTAG 93
                        * **  **    * **    **  *     ****  * *****   * **    **  

consensus_8395#0      CGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCA 1306
consensus_8395#1      CGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCA 378
consensus_8395#3      CGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCA 333
consensus_8395#2      CGGTAAAATCCCACACATAATGGATCGTGTCCGTGTCGGACGTGGCCGCAATATGCACCA 362
consensus_8395#4      TA--AAAATGGTATCGGCAACAAGGCATACATGG-------------------------- 125
                          *****   *     **     * *    *                           

consensus_8395#0      GTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTA 1366
consensus_8395#1      GTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTA 438
consensus_8395#3      GTGTGATGGCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTA 393
consensus_8395#2      GTGTGATGCCTGTGTTATTTTCGCAGAATTCTCTGCAACCAGGATTCAGCGTAGCAGTTA 422
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      GTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGCACTGACA 1426
consensus_8395#1      GTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGTACTGACA 498
consensus_8395#3      GTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGCACTGACA 453
consensus_8395#2      GTTTTCGCTGTAATTTGCTGGGCTCATCACAAAGGGCAACGTTTAGAAGCAGCACTGACA 482
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      CAACAAAGCCTAAGGGCGAAATCCATGTATGCTTGTTTGCCGATACCATCTTTACTAAAA 1486
consensus_8395#1      CAACAAAGCCTAAGGGAGAAATCCATGTATGCTTGTTTGCCGATACCATTTTTACTAAAA 558
consensus_8395#3      CAACAAAGCCTAAGGGCGAAATCCATGTATGCTTGTTTGCCGATACCATTTTTACTAAAA 513
consensus_8395#2      CAACAAAGCCTAAGGGCGAAATCCATGTATGCTTGTTTGCCGATACCATTTTTACTAAAA 542
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      TCACAAGCTAGTGCGTGTTTAAACACTCCCGCTTGGTGACGTTAACACCACAAAAAGATA 1546
consensus_8395#1      TCACAAGCTAGTGCGTGTTTAAACACTTCCGCTTGGTGACGTTAACACCACAAAAAGATT 618
consensus_8395#3      TCACAAGCT------------------------TGGTGACGTTAACACCACAAAAAGATT 549
consensus_8395#2      TCACAAGCT------------------------TGGTGACGTTAACACCACAAAAAGATT 578
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      AAAATACGTATTTGATCGCTATCC-TAAAAAAGAAGGCACTTTAATTTCTCCACTGAACC 1605
consensus_8395#1      AAAATATGTATTTGATCGCAATCC-TAAAAAAGAAGGCACTTTAATTTCTCC-CCCACGC 676
consensus_8395#3      AAAATATGTATTTAATCGCAATCC-TAAAAAAGAAGGCACTTTAATTTCTCGACTGAACC 608
consensus_8395#2      AAAATATGTATTTAATCGCAATCCCTAAAAAAGAAGGCACTT-AATTTCTCGACTGAACT 637
consensus_8395#4      ------------------------------------------------------------
                                                                                  

consensus_8395#0      GAGCGCAACCAATAGCACCGTCA------------ 1628
consensus_8395#1      GTCCGCGG--------------------------- 684
consensus_8395#3      GAGCGCAACCAATAGCACCGTCACTCGCTCGCCGG 643
consensus_8395#2      GCNNCCTCGTGGCCGATCT---------------- 656
consensus_8395#4      -----------------------------------
                                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)