These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 476 fasta sequence [CTGGAATCGTTTCATTCATAACGCTGTTGTAGTAATTGTATCGAACGTACATCATGAAAGGTAATTTAAAGTGAAA-ACTGCAAGT--AAATTGCGATTCAAATGATGGACTGTCCACGGTTTTCAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAGGATTTTTGTGACTTTCCCGAGGAAGCAAACTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATCAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT] [+] EMBL CNS09GVY [CTGGAATCGTTTCATTCATAACGCTGTTGTAGTAATTGTATCGAACGTACATCATGAAAGGTAATTTAAAGTGAAA ACTGCAAGT AAATTGCGATTCAAATGATGGACTGTCCACGGTTTTCAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCCGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAAATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAGGATTTTTGTGACTTTCCCGAGGAAGCAAACTGCGAACGGCCGCTGCAAATTGACCCGTAATGGTTCGATTAATTAAGTGAATAAAATCTTTTATTATCAAAATTATAATGTGGTTAAAATATGTTTCTGTTAGCGATATATTTGACGGT] [+] EMBL BM623967 [ ccgACGCTGTTGTAGTAATTGTATCGAACGTAAATCATGAAAGGTAAATTAAAGTGAAACACTGCAAGTAAAAATTGCGAGCCAAATATTTGACTGTCCACGGGTTTTAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCTGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTACACATTCCCCACTTTTCCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATTAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT] [+] EMBL BX628230 [ GTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTATGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTTCACCCGGTTCACATTCCTCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAACATCGAGAAGGATTTTTGTGACTTTCCCGAGGAAGCAAACTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATGAACTAAGTGAATAAAATTTTTTATTATCAAAATTAAAATGTGGTTAAAATATG TGT GCGATATATTTGACAGT] consensusID : consensus_8424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 410 fasta sequence [CCGCCCACGCGTCCGACCGCGCTGTTGTAGTAATTGTATCGAACGTAAATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATTAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT] [+] EMBL BM626738 [CCGCCCACGCGTCCGATAACGCTGTTGTAGTAATTGTATCGAACGTAAATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCTGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTACACATTCCCCACTTTTCCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATTAA ] [+] EMBL BM580599 [ CCGCGCTGTTGTAGTAATTGTATCGAACGCAAATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCTCACTTTACCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAGGATTTTTGTGACTTTCCCGATGAAGCTAACTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCAATCAAcatgt ] [+] EMBL BM598609 [ CCGCGCTGTTGTAGTAATTGTATCGAACGTAAATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCTGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTACACATTCCCCACTTTTCCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATT ] [+] EMBL BM610697 [ CCGCGCTGTTGTAGTAATTGTATCGAACGTACATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATc ] [+] EMBL BM626452 [ GCGCTGTTGTAGTAATTGTATCGAACGTACATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATc ] [+] EMBL BM621894 [ ccgAGTAATTGTATCGAACGTAAATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCTGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTACACATTCCCCACTTTTCCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGT AATAAAATCTTTTATTATTAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT] [+] EMBL BM635278 [ ccgCGAACGTACATCATGAAAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGACATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTTACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCGGCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGCGAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTATTATc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8424#0 CTGGAATCGTTTCATTCATAACGCTGTTGTAGTAATTGTATCGAACGTACATCATGAAAG 60 consensus_8424#1 ------------------------------------------------------------ consensus_8424#0 GTAATTTAAAGTGAAAACTGCAAGTAAATTGCGATTCAAATGATGGACTGTCCACGGTTT 120 consensus_8424#1 -CCGCCCACGCGTCCGACCGCGCTGTTGTAGTAATTGTATCGAACG-TAAATCATGAA-- 56 * ** ** * * *** * ** * ** * consensus_8424#0 TCAGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGAC 180 consensus_8424#1 --AGGTGCCGGTGCGCTAATTTTGCTAGCCACGTTTGCTGTGGCAGTACACGCCCTGGAC 114 ********************************************************** consensus_8424#0 ATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTT 240 consensus_8424#1 ATCCCGCTAGAATGCCCCGAAGAGGACGACATTTTCCACCCGGTTCACATTCCCCACTTT 174 ************************************************************ consensus_8424#0 ACCGATTGCACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCG 300 consensus_8424#1 ACCGATTGTACCAAGTTCTACAAGTGTTTCAACGGCAAAAAGTACGAGATGGACTGCCCG 234 ******** *************************************************** consensus_8424#0 GCCGGTTTGCACTGGAATATCGAGAAGGATTTTTGTGACTTTCCCGAGGAAGCAAACTGC 360 consensus_8424#1 GCCGGTTTGCACTGGAATATCGAGAAAGATTTTTGTGACTTTCCCGAGGAAGCTAGCTGC 294 ************************** ************************** * **** consensus_8424#0 GAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTA 420 consensus_8424#1 GAACGGCCGCTGCAAATCGACCCGTAATGGTTCGATCAATTAAGTGAATAAAATCTTTTA 354 ************************************************************ consensus_8424#0 TTATCAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT 476 consensus_8424#1 TTATTAAAATTAAAATGTGGTTAAAATATGTTTCTGTGAGCGATATATTTGACGGT 410 **** *************************************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||