These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1339 fasta sequence [GACGCTTGGATTTATCAACTTTTATTTGCCTTTTTTCCATCGGATTTTCGCATTTGTTTTACTTAACTGTTTAAAATTTAACTTTAATTCTCACCAATATCGCTGTATTCCCTAGCTCGCCCGCTCTCTTTCTCGCTTTCCCTACTGCTCCGCTTCACATTGCTGCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAAGGAGGAAGGAAAAAACGAAACGTACCTAAAGCGGGCTTTTGCAAAGTCTATCTGTAACGCAGGTGCATACGTGTGTGATTG-TTTGTGTGTGTGTGTGCAAGTGTTGAGCGTTTCTCTCTAGTCGCTTAGTGCCTTAGTGTCTTGGTACAATCCTCAGCTGTGCTGGCAACTCTTGTGGTACAGTCGTCAACTCGCACGACCTAATAACGTACCCGCCGTGGGTTCAATCCTCATATGGAACGGTTCCCCCCCCCCTCCGCATCACTACGATGCCGGGTAGCTAAATAAGTCTCGAAAGCCTTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCAAACAAGAAGAAGAAGAGGAAAATTCCGAATCGATCGTGAAAAATCCTCCATCCCCAGGTC-AAACCTACCCTCCGTTGATATGGCTTACAGGTGGGTGGTGC--GGGGGGGGGGGAGAGGGTGATCTGGAAAGCGCTACACTACACACACGCACC--CACACACACACAAGCGCACT---AAAGGACGGCGTTTACTGTGTTTCTTGAAAAAAGGGAAATCATCATCCTTGTTTGTATGCTATATTGTTGTTTCGAACTTTTACGTTAGTAATTCTATACATATAGAGGGGAAAGGGC-GGGGGGGGGGAGAGAACTTCCAAAGTGGTGGCGTTACGGGAGCAAAAAAACTATTAAAAAAAAAGAACATAAACTTAGCGGAGAGAAGAAGGAGGAAGATGATGAAGAAGAAGAAGAAGAAGAGACAGAAAACTAACCTATATGTACCACGTGTACGCGGCGCGAACATACGTTTGTTGTGTGTTGTGTATGTGTATGCATGTGTTTTGTTTGTTTGTATTTAACGTACTAAATCAATGCAAATCTTACAGCAATAGCAATTTGGATGCATCTTGGCTACATCACACAAACACACACGAACGCATTCACGTTAACAGGTGGCTGCTGGTTGCCTGTGTGCAGGTTCTGCTACTTTCTTCCTCTCCACAGAAAAAAAAGATAAAAAAAAAAACCTAACCCTAGCTTTACTTCTAGTTTTAGTAATTTCCTGCCTTCGCTACTAATTTCTTATGCACACACACCGG] [-] EMBL BM656767 [GACGCTTGGATTTATCAACTTTTATTTGCCTTTTTTCCATCGGATTTTCGCATTTGTTTTACTTAACTGTTTAAAATTTAACTTTAATTCTCACGAATATCGCTGTATTCCCTAGCTCGCTCGCTCTCTTCCTCGCTTTCCCTACTGCTCCGCTTCACATTGCTGCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAAGGAGGAAGGAAAAAACGAAACGTACCTAACGCGGGCTTTTGCAAAGTCTTTCTGTAACGCAGGTGCATACGTGTGTGATTG TTTGTGTGTGTGTGTGCAAGTGTTGAGCGTTcgg ] [+] EMBL BX624144 [ ATTTATCAACTTTTATTTGCCTTTTTTCCATCGGATTTTCGCATTTGTTTTACTTAACTGTTTAAAATTTAACTTTAATTCTCACCAATATCGCTGTATTCCCTAGCTCGCCCGCTCTCTTTCTCGCTTTCCCTACTGCTCCGCTTCACATTGCTGCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAAGGAGGAAGGAAAAAACGAAACGTACCTAAAGCGGGCTTTTGCAAAGTCTATCTGTAACGCAGGTGCATACGTGTGTGATTG TTTGTGTGTGTGTGTGCAAGTGTTGAGCGTTTCTCTCTAGTCGCTTAGTGCCTTAGTGTCTTGGTACAATCCTCAGCTGTGCTGGCAACTCTTGTGGTACAGTCGTCAACTCGCACGACCTAATAACGTACCCGCCGTGGGTTCAATCCTCATATGGAACGGTTCCCCCCCCCCTCCGCATCACTACGATGCCGGGTAGCTAAATAAGTCTCGAAAGCCTTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCCAACAAGAAGAAGAAGAGGAAAATTCCGAATCGATCGTGAAAAATCCTCCATCCCCAGGTCAAAACCTACCCTCCGTTGATATG ] [+] EMBL AGA281894 [ CTTTAATTCTCACCAATATCGCTGTATTCCCTAGCTCGCCCGCTCTCTTTCTCGCTTTCCCTACTGCTCCGCTTCACATTGCTGCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAAGGAGGAAGGAAAAAACGAAACGTACCTAAAGCGGGCTTTTGCAAAGTCTATCTGTTACGCAGGTGCATACGTGTGTGATTG TTTGTGTGTGTGTGTGCAAG ] [-] EMBL BX616957 [ ATTGCTGCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAAGGAGGAAGGAAAAAACGAAACGTACCTAAAGCGGGCTTTTGCAAAGTCTATCTGTAACGCAGGTGCATACGTGTGTGATTG TTTGTGTGTGTGTGTGCAAGTGTTGAGCGTTTCTCTCTAGTCGCTTAGTGCCTTAGTGTCTTGGTACAATCCTCAGCTGTGCTGGCAACTCTTGTGGTACAGTCGTCAACTCGCACGACCTAATAACGTACCCGCCGTGGGTTCAATC CATATGGAACGGTTCCCCCCCCCCTCCGCATCACTACGATGCCGGGTAGCTAAATAAGTCTCGAAAGCCTTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCAAACAAGAAGAAGAAGAGGAAAATTCCGAA ] [-] EMBL BX619241 [ CCGATTACAGAT AAAAGGAGGNNGGGAAAAACGAAACGTACCT AAGCGGGCTTTGGC GAGTCTATCTGTNACGCAGGGGCATACGTGTGTGATTGTTTTGTGTGTGTGTGTGCAAGTGTTGAGCGTNTCTCTNTAGTCGCTTAGTGNNTTAGTGTCTTGGTACGATCCTCAGCTGTGCTGGCNACTCTTGTGGTACAGTCGTCNACTCGCACGACNTNATNACGTACCCGCCGTGGGTTCAATCCTCATATGGAACGGNTCCCCCCCCCCTCCGCATCACTACGATGCCGGGTAGCTAAATAAGTCTCGAAAGCCTTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCAAACAAGAAGAAGAAGAGGAAAATTCCGAATCGATCGTGAAAAATCCTCCATCCCCAGGTC AAACCTACCCTCCGTTGATATGGCTTACAGGTGGGTGGTGC GGGGGGGGGGGAGAGGGTGATCTGGAAAGCGCTACACTACACACACGCACCCACACACACACACAAGCGCACT AAAGGACGGCGTTTACTGTGTTTCTTGAAAAAAGGGAAATCATCATCCTTGTT ] [-] EMBL BM655012 [ AAAGCCTTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCAAACAAGAAGAAGAAGAGGAAAATTCCGAATCGATCGTGAAAAATCCCCCAACCCCAGGTC AAACCTACCCTCCGTTGATATGGCTTACAGGTGGGAGGTGCGGGGGGGGGGGGGGGAGGGTGATCTGGAAAGCGCTACACTACACACGCGCACC CACACACACACAAGCGCACTAAAAAAGGACGGTGTTTACTGTGTTTCTTGAAGAAAGGGAAATCATCATCCTTGTTTGTATGCTATATTGTTGTTTCGAACTTTTACGTTAGTAATTCTATACATATAGAGGGGAAAGGGCGGGGGGGGGGGAGAGAACTTCCAAAGTGGTGGCGTTACGGGAGCAAAAAAACTATTAAAAAAAAAGAACATAAACTTAGCGG ] [-] EMBL AGA280198 [ AAAAATCCTCCATCCGCAGGTC AAACCTACCCTCCGTTGATATGGCTTACAGGTGGGTGGTGC GGGGGGGGGGGAGAGGGTGATCTGGAAAGCGCTACACTACACACACGCACCCACACACACACACAAGCGCACT AAAGGACGGCGTTTACTGTGTTTCTTGAAAAAAGGGAAATCATCATCCTTGTTTGTATGCTATATTGTTGTTTCGAACTTTTACGTTAGTAATTCTATACATATAGAGGGGAAAGGGC GGGGGGGGAGAGAACTTCCAAAGTGGTGGCGTTACGGGAGCAAAAAAAa ] [-] EMBL BX614336 [ TCCTCCATCCCCAGGTC AAACTTACCCTCCGTTGATATGGCTTACAGGTGGGTGTTGC GGGGGGGGGGGAGAGGGTGATCTGGAAAGCGCTACACTACACACACGCAC ] [-] EMBL BM636786 [ AGGACGGCGTTTACTGTGTTTCTTGAAGAAAGGGAACTCATCATCCTTGTTTGTATGCTATATTGTTGTTTCGAACTTTTACGTTAGTAATTCTATACATATAGAGGGGAAAGGGC GGGGGGGGGGAGGGAATTTCCAAAGTGGTAGCGTTACGGGAGCAAAAAAACTATT TAAAAAAAGAACATAAACTTAGGGAAGAGAAGAAGGAGGAAGATGATGAAGAAGAAGAAGAAGAAGAGACAGAAAACTAACCTATATGTACCACGTGTACGCGGCGCGAACATACGTTTGTTGTGTGTTGTGTATGTGTATGCATGTGTTTTGTTTGTTTGTATTTAACGTACTAAATCAATGCAAATCTTACAGCAATAGCAATTTGGATGCATCTTGGCTACATCACACAAACACACACGAACGCATTCACGTTAACAGGTGGCTGCTGGTTGCCTGTGTGCAGGTTCTGCTACTTTCTTCCTCTCCACAGAAAAAAAAGATAAAAAAAAAAACCTAACCCTAGCTTTACTTCTAGTTTTAGTAATTTCCTGCCTTCGCTACTAATTTCTTATGCACACACACCGG] consensusID : consensus_8433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence [CGNTTTCCCTANTGCTCCGCTTCACATTGCTNCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTNCCGATTANGAATAAAAAGGAGCAAGGAAAAAACGAAACGTACCTAACGCGGGCTTTTGCAAAGTNTTTTTGTTANGCAGGTGCATACGTGTGTGA] [-] EMBL BX620721 [CGNTTTCCCTANTGCTCCGCTTCACATTGCTNCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTNCCGATTANGAATAAAAAGGAGCAAGGAAAAAACGAAACGTACCTAACGCGGGCTTTTGCAAAGTNTTTTTGTTANGCAGGTGCATACGTGTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8433#0 GACGCTTGGATTTATCAACTTTTATTTGCCTTTTTTCCATCGGATTTTCGCATTTGTTTT 60 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 ACTTAACTGTTTAAAATTTAACTTTAATTCTCACCAATATCGCTGTATTCCCTAGCTCGC 120 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 CCGCTCTCTTTCTCGCTTTCCCTACTGCTCCGCTTCACATTGCTGCCCGCTTGCCTACCG 180 consensus_8433#1 -------------CGNTTTCCCTANTGCTCCGCTTCACATTGCTNCCCGCTTGCCTACCG 47 ** ******** ******************* *************** consensus_8433#0 AGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAA 240 consensus_8433#1 AGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTNCCGATTANGAATAAAAA 107 ****************************************** ******* ******* consensus_8433#0 GGAGGAAGGAAAAAACGAAACGTACCTAAAGCGGGCTTTTGCAAAGTCTATCTGTAACGC 300 consensus_8433#1 GGAGCAAGGAAAAAACGAAACGTACCTAACGCGGGCTTTTGCAAAGTNTTTTTGTTANGC 167 **** ************************ ***************** * * *** * ** consensus_8433#0 AGGTGCATACGTGTGTGATTGTTTGTGTGTGTGTGTGCAAGTGTTGAGCGTTTCTCTCTA 360 consensus_8433#1 AGGTGCATACGTGTGTGA------------------------------------------ 185 ****************** consensus_8433#0 GTCGCTTAGTGCCTTAGTGTCTTGGTACAATCCTCAGCTGTGCTGGCAACTCTTGTGGTA 420 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 CAGTCGTCAACTCGCACGACCTAATAACGTACCCGCCGTGGGTTCAATCCTCATATGGAA 480 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 CGGTTCCCCCCCCCCTCCGCATCACTACGATGCCGGGTAGCTAAATAAGTCTCGAAAGCC 540 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 TTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCAAACAAGAAGAAGAAG 600 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 AGGAAAATTCCGAATCGATCGTGAAAAATCCTCCATCCCCAGGTCAAACCTACCCTCCGT 660 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 TGATATGGCTTACAGGTGGGTGGTGCGGGGGGGGGGGAGAGGGTGATCTGGAAAGCGCTA 720 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 CACTACACACACGCACCCACACACACACAAGCGCACTAAAGGACGGCGTTTACTGTGTTT 780 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 CTTGAAAAAAGGGAAATCATCATCCTTGTTTGTATGCTATATTGTTGTTTCGAACTTTTA 840 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 CGTTAGTAATTCTATACATATAGAGGGGAAAGGGCGGGGGGGGGGAGAGAACTTCCAAAG 900 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 TGGTGGCGTTACGGGAGCAAAAAAACTATTAAAAAAAAAGAACATAAACTTAGCGGAGAG 960 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 AAGAAGGAGGAAGATGATGAAGAAGAAGAAGAAGAAGAGACAGAAAACTAACCTATATGT 1020 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 ACCACGTGTACGCGGCGCGAACATACGTTTGTTGTGTGTTGTGTATGTGTATGCATGTGT 1080 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 TTTGTTTGTTTGTATTTAACGTACTAAATCAATGCAAATCTTACAGCAATAGCAATTTGG 1140 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 ATGCATCTTGGCTACATCACACAAACACACACGAACGCATTCACGTTAACAGGTGGCTGC 1200 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 TGGTTGCCTGTGTGCAGGTTCTGCTACTTTCTTCCTCTCCACAGAAAAAAAAGATAAAAA 1260 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 AAAAAACCTAACCCTAGCTTTACTTCTAGTTTTAGTAATTTCCTGCCTTCGCTACTAATT 1320 consensus_8433#1 ------------------------------------------------------------ consensus_8433#0 TCTTATGCACACACACCGG 1339 consensus_8433#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||