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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1048 fasta sequence
[CTACTGGATCACAAATTTGTTATCATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG-AAATCATTCCAACGCGCAACTAACATACTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA-GTGCAA-ACG-T-TGAACTGATTAAG-AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTGTCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT-GCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCTAAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAAATGATACGATCGACTCGTTTTCGATTTAAAACTCTGCACACCGTTAGCGGTTAAAATCTCAGGTCAATAGCAATAGGCCGGTAGCCATACGTTAGTGAAATATAGATCGCAAGCTCAAACAAATAAAGGCGACACCTTACCAAAAAAA]
[+] EMBL CNS08TN8 [CTACTGGATCACAAATTTGTTATCATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCAACGCGCAACTAACATACTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACGTT TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTATCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTTTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTA TAATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCTAAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAAATGATACGATCGACTCGTTTTCGATTTAAAACTCTG ]
[+] EMBL CNS08VDD [ AATTTTGTTATCATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTGTAAATCATTCCAACGCGCAACTAACATACTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAAGGTGCAACACG TGTGAACTGATTAAGCAAGCACAT ]
[+] EMBL BM582127 [ ccgCATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCTACCCGCAACGAACATACTCGCGACAATCTCCCTCTGGTAGTTGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATCAAG AAGCACATTGGCGAGTATCCAGATTTCCCGAAGAAAGGGATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAAGCAATCAAAAGTGTGCTCGTGTCGTACGTTAGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACG ]
[+] EMBL BX606265 [ CATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCAACGCGCAACGAACATACTCGCGACAATCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGTGTGCTCGTGTCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTACTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTAGCCACCGGCGGCACGATGGATGCAGCTAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTTCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAAT ]
[+] EMBL BM649458 [ ccGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCAACGCGCAACGAACATACTCGCGACAATCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGG GAGGTTTGCAAGGCAATCAAAAGTGTGCTCGTGTCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTACTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTAGCCACCGGCGGCACGATGGATGCAGCTAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACGGAGCTAGGC ]
[+] EMBL CNS08LZ8 [ tctTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCAACGCGCAACTAACATACTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAGGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACGTT TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTATCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGACCCT GCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTATTCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCTAAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAAATGATACGATCGACTCGTTTTCGATTTAAAACTCTGCACACCGTTAGCGGTTAAAATCTCAGGTCAATAGCAATAGGCCGGTAGCCATACGTTAGTGAAATATAGATCGCAAGCTCAAACAAATAAAGGCGACACCT ]
[-] EMBL CNS08LZ9 [ ATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCAACGCGCAACTAACATACTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAGGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCG CCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTATCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGACCCTCGCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCTAAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAAATGATACGATCGACTCGTTTTCGATTTAAAACTCTGCACACCGTTAGCGGTTAAAATCTCAGGTCAATAGCAATAGGCCGGTAGCCATACGTTAGTGAAATATAGATCGCAAGCTCAAAAAAATAAAc ]
[+] EMBL BX626341 [ ATTCCAACGCGCAACGAACATACTCGCGACAATCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGTGTGCTCGTGTCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTACTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTAGCCACCGGCGGCACGATGGATGCAGCTAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACCGAGCTA GCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGA ]
[-] EMBL CNS08TN9 [ GTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCG CCTTCGGCATGTTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTTTCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGAAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAAAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCTAAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAAATGATACGATCGACTCGTTTTCGATTTAAAACTCTGCACACCGTTAGCGGTTAAAATCTCAGGTCAATAGCAATAGGCCGGTAGCCATACGTTAGTGAAATATAGATCGCAAGCTCAAACAAATAAAGGCTACACCTTACCAAAAAAA]
consensusID : consensus_8437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 114 fasta sequence
[CCNAGTTAATACTTAAACAATATCTGCCAAAGCTGAAATCATTCAACGCGCAGAACATACTCGCGACATCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCA]
[+] EMBL AL695165 [CCNAGTTAATACTTAAACAATATCTGCCAAAGCTGAAATCATTCAACGCGCAGAACATACTCGCGACATCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8437#0 CTACTGGATCACAAATTTGTTATCATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAA 60
consensus_8437#1 --------------------------------------------------------CCNA 4
*
consensus_8437#0 GCAACTAACTAAACAAATAATCTGCCAAAGCTGAAATCATTCCAACGCGCAACTAACATA 120
consensus_8437#1 GTTAATACTTAAACAAT--ATCTGCCAAAGCTGAAATCATTC-AACGCGCAG--AACATA 59
* * ** ******* *********************** ******** ******
consensus_8437#0 CTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAA 180
consensus_8437#1 CTCGCGACA-TCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCA---- 114
********* ********** ***********************************
consensus_8437#0 GCGCGAAAGTATGTCCGCCGATCAAAGTGCAAACGTTGAACTGATTAAGAAGCACATTGG 240
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 CGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCG 300
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 GCATGGTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTGTCGTACGTTCGGGAAAGCTG 360
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 TCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGAT 420
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 TGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATC 480
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 CTGCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGG 540
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 AAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCAC 600
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 GATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGT 660
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 GATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGT 720
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 ACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCC 780
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 AATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCT 840
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 AAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAA 900
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 ATGATACGATCGACTCGTTTTCGATTTAAAACTCTGCACACCGTTAGCGGTTAAAATCTC 960
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 AGGTCAATAGCAATAGGCCGGTAGCCATACGTTAGTGAAATATAGATCGCAAGCTCAAAC 1020
consensus_8437#1 ------------------------------------------------------------
consensus_8437#0 AAATAAAGGCGACACCTTACCAAAAAAA 1048
consensus_8437#1 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||