These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 741 fasta sequence [GGGATGGTTGGAAGAGATTGTTGTTGTGTAGTGCTGTGTAGTGTTGCTGGCCAAGCCAAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGCTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTC-TTCAATTTTTCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCGAACCAGCCGGTACAAACAATAAATGAACTAAA] [+] EMBL BX608300 [GGGATGGTTGGAAGAGATTGTTGTTGTGTAGTGCTGTGTAGTGTTGCTGGCCAAGCCAAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCTGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGCTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTC TTCAATTTTTCCGCATCATCCTGAGGACATTATTAGC ] [+] EMBL BX613927 [ TGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGG ] [+] EMBL BX613926 [ CGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGTTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTCTTTCAA TTTTCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCG ] [+] EMBL BX615506 [ AGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGCTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTC TTCAATTTTTCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCGAACCAGCCGGTACAAACAATAAAT ] [+] EMBL BX612142 [ GATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACAGATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATATATATACATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCAAATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAGCGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCCAAGGAGGGTGCGTTTATGGAAGGAGAATTTTATCTTACTTCAATATTTTTTAGATAGCCCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGCTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTC TTCAATTTTTCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCGAACCAGCCGGTACAAAac ] [+] EMBL BX622254 [ AGGCTCTTGGCATTACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTC TTCAATTTTTCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCGAACCAGCCGGTACAAACAATAAATGAACTAAA] consensusID : consensus_8443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [AGGCAGAATCGGCACGNGGATGTTGTTGTGTAGTGCTGTGCTAGTGTTGCTGGCCAAGCCAAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGAAAAAGAAAGAAAGCGTGAAGGACAACAAGCGCGATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGAATGTACTGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATGCATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAAGCAACAAAAAAAAAAAAAACAAGAAAACAGGCGCACAGCAAAATGTACTAGGAATTACAAAATCCAGCTCAANAAACAGTTTGAACCGAATTGAGTCTGATCGGTTACCGATCCCGTTATTGGTCTCCCCCATTATTTGGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCACTGACTCCTCATGGTGTAGTAGCATCGGAGGATCAAATAGTTTCATTATTACAGGTCAAACGAGATAGTAT] [+] EMBL BX467889 [AGGCAGAATCGGCACGNGGATGTTGTTGTGTAGTGCTGTGCTAGTGTTGCTGGCCAAGCCAAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATGTGTAGCGATCGACCTAGGAAGGAGAAAAAGAAAGAAAGCGTGAAGGACAACAAGCGCGATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGAATGTACTGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATGCATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAAGCAACAAAAAAAAAAAAAACAAGAAAACAGGCGCACAGCAAAATGTACTAGGAATTACAAAATCCAGCTCAANAAACAGTTTGAACCGAATTGAGTCTGATCGGTTACCGATCCCGTTATTGGTCTCCCCCATTATTTGGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCACTGACTCCTCATGGTGTAGTAGCATCGGAGGATCAAATAGTTTCATTATTACAGGTCAAACGAGATAGTAT] consensusID : consensus_8443#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 578 fasta sequence [CCGCTATTCTCCATAATTCTTCTCTTCTTTAAAGGGAAGGAGAGAGCGAGTGAGAGGGAGAGAAATACAGAAAGGGAAATATGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAAAAAGAAAGAAAGCGTGAAGGACAACAAGCGCGATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGAATGTATGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATGCATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAATCAACAAAAAAAAAAAAAACAAAAAACAGGCGCACAGCAAAATGTACTAGAATTACAAAATCCACTCAAAAACAGTTTGAACCGAATTGATCTGATCGGTTACCGATCCCTTATTGGTCTCCCCCATTATTTTGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCATGACTCCTCATGGTGTAGTAGCATCGGAGGGATCAAATAGTTTCATTATTACAGCTCAAACGAGATAAATATCAAAAATGGTGTATTTTTGTGACCTATTTAA] [+] EMBL BM635552 [CCGCTATTCTCCATAATTCTTCTCTTCTTTAAAGGGAAGGAGAGAGCGAGTGAGAGGGAGAGAAATACAGAAAGGGAAATATGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAAAAAGAAAGAAAGCGTGAAGGACAACAAGCGCGATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGAATGTATGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATGCATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAATCAACAAAAAAAAAAAAAACAAAAAACAGGCGCACAGCAAAATGTACTAGAATTACAAAATCCACTCAAAAACAGTTTGAACCGAATTGATCTGATCGGTTACCGATCCCTTATTGGTCTCCCCCATTATTTTGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCATGACTCCTCATGGTGTAGTAGCATCGGAGGGATCAAATAGTTTCATTATTACAGCTCAAACGAGATAAATATCAAAAATGGTGTATTTTTGTGACCTATTTAA] [+] EMBL BX618686 [ GAAAGGGAAATATGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAAAAAGAAAGAAAGCGTGAAGGACAACAAGCGCGATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGAATGTATGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATGCATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAAGCAACAAAAAAAAAAAAAACAAAAAACAGGCGCACAGCAAAATGTACTAGAATTACAAAATCCACTCAAAAACAGTTTGAACCGAATTGATCTGATCGGTTACCGATCCCTTATTGGTCTCCCCCATTATTTTGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCATGACTCCTCATGGTGTAGTAGCATCGGAGGGATCAAATAGTTTCATTATT ] consensusID : consensus_8443#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 117 fasta sequence [CAGAGACATANCGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGANGGATGACGGCGCTTGCNCCTGNCCCGCTAGGGCGCTCNGGCTCTTGGCATTACACTTACACT] [+] EMBL BX621769 [CAGAGACATANCGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGAGGGCGAGGANGGATGACGGCGCTTGCNCCTGNCCCGCTAGGGCGCTCNGGCTCTTGGCATTACACTTACACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8443#0 --GGGATGGTTGGAAGAGATTGTTGTTGTGTAGTGCTGTG-TAGTGTTGCTGGCCAAGCC 57 consensus_8443#3 ------------------------------------------------------------ consensus_8443#1 AGGCAGAATCGGCACGNGGATGTTGTTGTGTAGTGCTGTGCTAGTGTTGCTGGCCAAGCC 60 consensus_8443#2 -------------------CCGCTATTCTCCATAATTCTTCTCTTCTTTAAAGGGAAG-- 39 consensus_8443#0 AAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATG 117 consensus_8443#3 ------------------------------------------------------------ consensus_8443#1 AAGCAAAAGTATTGGATCGTTGGATGTGTATAAGTGTGTGTGTGAGAAAGAGAGAGAATG 120 consensus_8443#2 GAGAGAGCGAGTGAGAGGGAGAGAAATACAGAAAGGGAAATATGAGAGAGAGAGAGAGAG 99 consensus_8443#0 TGTAGCGATCGACCTAGGAAGGAGGATTTGTTTCTTGTTTATGTTTCTTGTTGTATAACA 177 consensus_8443#3 ------------------------------------------------------------ consensus_8443#1 TGTAGCGATCGACCTAGGAAGGAGAAAAAGAA--------AGAAAGCGTGAAGGACAACA 172 consensus_8443#2 AG-AGAGAAAGA-----GAGAAAGAAAAAGAA--------AGAAAGCGTGAAGGACAACA 145 consensus_8443#0 GATATTTTATTTTTCCACAAAGCTTTGAAAGAGAGAAAATGAGAGAGAGAGAGAGTATAT 237 consensus_8443#3 ------------------------------------------------------------ consensus_8443#1 AGCGCG--ATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGA 230 consensus_8443#2 AGCGCG--ATCGATCAAACCACATCTCACACGTGGAAATTGAGTGTGTCTGTGTGTTTGA 203 consensus_8443#0 ATATA-CATATAAAGCTATTCACATTATTTGCTTCGCTCGAAAGACAGTTAGAACGGCCA 296 consensus_8443#3 ------------------------------------------------------------ consensus_8443#1 ATGTACTGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATG 290 consensus_8443#2 ATGTA-TGTCTAGGTGTGCGTGTCTACAACAGTCTGTGATCAGTATTACTTACAGGAATG 262 consensus_8443#0 AATCTGGACCGCCTCAAGGAGGTTTACTTAAAAAAACGCCACTAAGCAACACTGGACCAG 356 consensus_8443#3 ------------------------------------------------------------ consensus_8443#1 CATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAAGCAACAAAAAAAAAAAAA 350 consensus_8443#2 CATCGGAACACAACCGCGCGATGGGGGCAATAAAGAGATGAATCAACAAAAAAAAAAAAA 322 consensus_8443#0 CGGATGGATCGGCGGCACAGGATGATTGCGCGTGTGTGTGAGAAATTCCTGTCAACGGCC 416 consensus_8443#3 ------------------------------------------------------------ consensus_8443#1 ACAAGAAAACAGGCGCACAGCAAAAT-GTACTAGGAATTACAAAATCCAGCTCAANAAAC 409 consensus_8443#2 ACAA-AAAACAGGCGCACAGCAAAAT-GTACTAG-AATTACAAAATCCA-CTCAAAAA-C 377 consensus_8443#0 AAGGAGGGTGCGTTTATGGAAGGAGAATTTT--ATCTTACTTCAATATTTTTTAGATAGC 474 consensus_8443#3 ------------------------------------------------------------ consensus_8443#1 AGTTTGAACCGAATTGAGTCTGATCGGTTACCGATCCCGTTATTGGTCTCCCCCATTATT 469 consensus_8443#2 AGTTTGAACCGAATTGA-TCTGATCGGTTACCGATCCC-TTATTGGTCTCCCCCATTATT 435 consensus_8443#0 CCGTAAATAGAGAGAGAGAGAGAGAAAGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGA 534 consensus_8443#3 ---------------CAGAGACATANCGAGCATGAGCCTGCCTGTCTGTTTTGGGCTGGA 45 consensus_8443#1 TGGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCACTGACTCCTCATGGTGTAGT 529 consensus_8443#2 TTGTACCTTCACATCACCTGCAATGGAACGAACGAGCTCA-TGACTCCTCATGGTGTAGT 494 * * * * **** * *** * * consensus_8443#0 GGGCGAGGAGGGATGACGGTGCGTGCAGCTGCCCGGTTAGGGCGCTGAGGCTCTTGGCAT 594 consensus_8443#3 GGGCGAGGANGGATGACGGCGCTTGCNCCTGNCCCGCTAGGGCGCTCNGGCTCTTGGCAT 105 consensus_8443#1 AGCATCGGAGG-ATCA-AATAGTTTCATTATTACAGGTCAAACGAGATAG-TAT------ 580 consensus_8443#2 AGCATCGGAGGGATCA-AATAGTTTCATTATTACAGCTCAAACGAGATAAATATCAAAAA 553 * *** * ** * * * * * * ** * * consensus_8443#0 TACACTTACACTAGATTAGTGCATAGACGGTATGAATTGAAACATTTATTCTTCAATTTT 654 consensus_8443#3 TACACTTACACT------------------------------------------------ 117 consensus_8443#1 ------------------------------------------------------------ consensus_8443#2 TGGTGTATTTTTGTGACCTATTTAA----------------------------------- 578 consensus_8443#0 TCCGCATCATCCTGAGGACATTATTAGCCTTTCTGATAGCGTGTTAGTGCAACCGAACCA 714 consensus_8443#3 ------------------------------------------------------------ consensus_8443#1 ------------------------------------------------------------ consensus_8443#2 ------------------------------------------------------------ consensus_8443#0 GCCGGTACAAACAATAAATGAACTAAA 741 consensus_8443#3 --------------------------- consensus_8443#1 --------------------------- consensus_8443#2 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||