These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1275 fasta sequence [CTTGGTGAATCCGCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCGCTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTGCAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTACACGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGAGCAGGTGCACGGTCGAGACGACCAGGTACGCAATGCCAAACCGCTGCAGTACGCCAAAGATGCGCAGATTGGCCATGCTGGGACCGTTCATCGAGTTCAGACACAGGCCAATTATGAACAGTTTCACCGAGCGAACCGCTATGCTCGACAGGATCGTGCGCTTGGGCACGTTGCGGTTGAGCTGGCCGCGTAACGAGATCGGCACGCACACGCCCATGATGAAGAGAAACCAGGGAAAGACGAGATCGGCCACGTGCAGCCCGTTCCAGGTCGCGTGCTCGATCCACCAGTAGTGGCCGCCGCCACTGTTCANGAAGATCATCAGCATGATCGCGATGCCGCGGAACGTGTCCAAACTTTGCAGCCGCTTCTTGGGCGTAACCTGGCCGGAACCTGGCCCGGTTTGGTGTGGTTTGCGGTCGGTTTCTTCGTTCGAGCTGTGGGCGGTCTCATCACCGGCCGCTGTATGGGAGGCTGCCGGCTGCTGGAAGCCAGACGCGCGGGAACGACGCAGGCCGTACCGTGCCATACGCACGAGACCAAAGACGGCACACGCGAGCAGTGCAATCGTAAGGAATGGAAGGTATATGTTGACCGGTTCCTTGGCCGTTTCCAGCGTACNNCCATTGCCGTCCGGTCGGACGCTCAGATCGTAAACGCCAAATTCACCCAATTGTGCGCTGTTAATTTGGCACAGGACGGTGTCATTGTCGAAGGAGTATTGGCCCACATCTCGGTCGAGCAGCCGCAGCCCGAGGCGGCGCGCCGCATCTATCTTCACCGTGGTGTGCCGTTT] [-] EMBL BX605286 [CTTGGTGAATCCGCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCGCTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTGCAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTACACGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGAGCAGGTGCACGGTCGAGACGACCAGGTACGCAATGCCAAACCGCTGCAGTACGCCAAAGATGCGCAGATTAGCCATGCTGGGACCATTCATCGAATTCAGACAGAGGCCAATTATGAACAGCTTTACCGAGCGAACCGCTATGCTCGACAGGATCGTGCGCTTGGGCACGTTGCGGTTGAGCTGGCCGCGTAACGAGATCGGCACGCACACGCCCATGATGAAGAGAAACCAGGGAAAGACGAGAT ] [-] EMBL AGA281121 [ TACCGTCGTACACGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCGGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAA ] [-] EMBL CNS098IG [ GCTGGTAGAGATGCGCTATTCCGAGCAGAGCACGATCGATGTACCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAG ] [-] EMBL BX619507 [ gtanACGCATGGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAGACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAGCGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGAGCAGGTGCACGGTCGAGACGACCAGGTACGCAATGCCAAACCGCTGCAGTACGCCAAAGATGCGCAGATTGGCCATGCTGGGACCGTTCATCGAGTTCAGACACAGGCCAATTATGAACAGTTTCACCGAGCGAACCGCTATGCTCGACAGGATCGTGCGCTTGGGCACGTTGCGGTTGAGCTGGCCGCGTAACGAGATCGGCACGCACACGCCCATGATGAAGAGAAACCAGGGAAAGACGAGATCGGCCACGTGCAGCCCGTTCCAGGTCGCGTGCTCGATCCACCAGTAGTGGCCGCCGCCACTGTTCAN ] [-] EMBL AGA281390 [ TACCTGCTGCTCGTGGCAGAGCAGGTGCACGGTCGAGACGACCAGGTACGCAATGCCAAACCGCTGCAGTACGCCAAAGATGCGCAGATTGGCCATGCTGGGACCGTTCATCGAGTTCAGACACAGGCCAATTATGAACAGTTTCACCGAGCGAACCGCTATGCTCGACAGGATCGTGCGCTTGGGSNCGTTGCGGTTGAGCTGGCCGCGTAACGAGATCGGCACGCACACGCCCATGATGAAGAGAAACCAGGGAAAGACGAGATCGGCCACGTGCAGCCCGTTCCAGGTCGCGTGCTCGATCCACCAGTAGTGGCCGCCGCCACTGTTCACGAAGATCATCAGCATGATCGCGATGCCGCGGAACGTGTCCAAACTTTGCAGCCGCTTCTTGGGCGTAACCTGGCCGGAACCTGGCCCGGTTTGGTGTGGTTTGCGGTCGGTTTCTTCGTTCGAGCTGTGGGCGGTCTCATCACCGGCCGCTGTATGGGAGGCTGCCGGCTGCTGGAAGCCAGACGCGCGGGAACGACGCAGGCCGTACCGTGCCATACGCACGAGACCAAAGACGGCACACGCGAGCAGTGCAATCGTAAGGAATGGAAGGTATATGTTGACCGGTTCCTTGGCCGTTTCCAGCGTACNNCCATTGCCGTCCGGTCGGACGCTCAGATCGTAAACGCCAAATTCACCCAATTGTGCGCTGTTAATTTGGCACAGGACGGTGTCATTGTCGAAGGAGTATTGGCCCACATCTCGGTCGAGCAGCCGCAGCCCGAGGCGGCGCGCCGCATCTATCTTCACCGTGGTGTGCCGTTT] consensusID : consensus_8447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 989 fasta sequence [CTGAGGGTCGAGCACATGTGGCCTTTTTTTTTTTTTTTGGAA-TGGAATGTGTGTGTATTGCGACACGTTTATTCACACGAAAACACTTTCAAAATAGAGAGAGAACAACAAACTGCACGATCGCACGACGGTTTGGGGCTTAAAGATTGTAAAATATCTTTCGCTTGTACAGGTAGAGCGCTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTC-A-CACGAA-G-TGTGTG-TTCATCGTGCCGATGCGCCAGTGCCACGGTAGCATCTTGTGAAAGACGGTGTGGCCCACGTACAGTACGATCGCATTCATCCCCGCATACACAAACGGTCGACCGTGCCAGGCGCGCTTCACATCGATCGCGTAGTAGCAGAGCAGCAGCAGCGCATGGGCGAGTGAGGCCGTCGCCAGCACGTACGACAGGGACCACAGGTTCTTGTTGATCGGGATCCACCCGTCGTTCTTGGTGAATCCGCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCGCTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTGCAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTAC-CGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGACCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTCCCG] [-] EMBL CNS09MF8 [CTGAGGGTCGAGCACATGTGGCCTTTTTTTTTTTTTTTGGAACTGGAATGTGTGTGTATTGCGACACGTTTATTCACACGAAAACACTTTCAAAATAGAGAGAGAACAACAAACTGCACGATCGCACGACGGTTTGGGGCTTAAAGATTGTAAAATATCTTTCGCTTGTACAGGTAGAGCGCTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTC AGCACGAA G TGTGTG TTCATCGTGCCGATGCGCCAGTGCCACGGTAGCATCTTGTGAAAGACGGTGTGGCCCACGTACAGTACGATCGCATTCATCCCCGCATACACAAACGGTCGACCGTGCCAGGCGCGCTTCACATCGATCGCGTAGTAGCAGAGCAGCAGCAGCGCATGGGCGAGTGAGGCCGTCGCCAGCACGTACGACAGGGACCACAGGTTCTTGTTGATCGGGATCCACCCGTCGTTCTTGGTGAATCCGCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCGCTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTGCAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTAC CGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTG ] [+] EMBL CNS098IH [ TGGAA TGGAATGTGTGTTTATTGCGACACGTTTATTCACACGAAAACACTTTCAAAATAGAGAGAGAACAACAAACTGCACGATCGCACGACGGTTTGGGGCTTAAAGATTGTAAAATATCTTTCGCTTGTACAGGTAGAGCGCTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTC A CACGAAGG TGT TT TTCATCGTGCCGATGCGCCAGTcc ] [+] EMBL CNS09MF9 [ ATGTGTGTGTATTGCGACACGTTTATTCACACGAAAACACTTTCAAAATAGAGAGAGAACAACAAACTGCACGATCGCACGACGGTTTGGGGCTTAAAGATTGTAAAATATCTTTCGCTTGTACAGGTAGAGCGCTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTC A CACGAA GTTGT TGCTTCATCGTGCCGATGCGCCAGTCCCACGGTAGCATCTTGTGAAAGACGGTGTGGCCCACGTACAGTACGATCGCATTCATCCCCGCATACACAAACGGTCGACCGTGCCAGGCGCGCTTCACATCGATCGCGTAGTAGCAGAGCAGCAGCAGCGCATGGGCGAGTAAGGCCGTCGCCAGCACGTACGACAGGGACCACAGGTTCTTGTTGATCGGGATCCACCCGTCGTTCTTGGTGAATCCGCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAA CGTACCATCCGCTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTGCAGTTTCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTACACGTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTACCCCGTGATGCCGCCAGTTCAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCCGAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCACCGTTAGCAGTCCGATGACCAGCCACTTCTTCTTTAGCCGCACAATGTCCTCGCTGGCACGGAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGACCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTCCCG] [+] EMBL AGA282749 [ ACGATCGCACGACGG TTGGGGCTTAAAGGTTGTAAAATATCTTTCGCTTGTACAGGTAGAGCGCTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTCAA CACGAA G TGTGTG TTCATTGTGCCGATGCGCCAGTGCCACGGTAGCATCTTGTGGAACACGGTGTGGCCCACGTACAGTACGATCGCATTCATCCCCGCATACACGAATGGTCGACCGTGCCAGGCGCGCTTCACATCGATCGCGTAGTAGCAGAGCAGCAGGAGCGCATGGGCGAGCGAAGCCGTCGCCAGCACGTACGACAGGGACCACAGGTTCTTGTTGATCGGGATCCACCCGTCGTTCTTGGTGAACCCGCACAGTGC ] [+] EMBL AGA283005 [ tca A CACGAA K KKKGTK TYCATTGTGCCGATGCGCCAGTGCCACGGTAGCATCTTGTGGAACACGGTGTGGCCCACGTACAGTACGATCGCATTCATCCCCGCATACACGAATGGTCGACCGTGCCAGGCGCGCTTCACATCGATCGCGTAGTAGCAGAGCAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8447#0 ------------------------------------------------------------ consensus_8447#1 CTGAGGGTCGAGCACATGTGGCCTTTTTTTTTTTTTTTGGAATGGAATGTGTGTGTATTG 60 consensus_8447#0 ------------------------------------------------------------ consensus_8447#1 CGACACGTTTATTCACACGAAAACACTTTCAAAATAGAGAGAGAACAACAAACTGCACGA 120 consensus_8447#0 ------------------------------------------------------------ consensus_8447#1 TCGCACGACGGTTTGGGGCTTAAAGATTGTAAAATATCTTTCGCTTGTACAGGTAGAGCG 180 consensus_8447#0 ------------------------------------------------------------ consensus_8447#1 CTATCAAATTCCACAGCACCGTGTTCCACAGTGCCTCGAGCGTCACACGAAGTGTGTGTT 240 consensus_8447#0 ------------------------------------------------------------ consensus_8447#1 CATCGTGCCGATGCGCCAGTGCCACGGTAGCATCTTGTGAAAGACGGTGTGGCCCACGTA 300 consensus_8447#0 ------------------------------------------------------------ consensus_8447#1 CAGTACGATCGCATTCATCCCCGCATACACAAACGGTCGACCGTGCCAGGCGCGCTTCAC 360 consensus_8447#0 ------------------------------------------------------------ consensus_8447#1 ATCGATCGCGTAGTAGCAGAGCAGCAGCAGCGCATGGGCGAGTGAGGCCGTCGCCAGCAC 420 consensus_8447#0 ------------------------------------------------CTTGGTGAATCC 12 consensus_8447#1 GTACGACAGGGACCACAGGTTCTTGTTGATCGGGATCCACCCGTCGTTCTTGGTGAATCC 480 ************ consensus_8447#0 GCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCG 72 consensus_8447#1 GCACAGTGCGCCGGCCGCCAAACCGAGCACAAGCGACCAGCTGGCGAAGCGTACCATCCG 540 ************************************************************ consensus_8447#0 CTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTG 132 consensus_8447#1 CTGACGGTGCTCGGTGTACGCGAGAATCGTGCAGCCACACTGCAGGCCGAGAAACACCTG 600 ************************************************************ consensus_8447#0 CAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTACAC 192 consensus_8447#1 CAGTATCGTGGGTAGGCAGCCGAACGGACCTTCCGGATCGAAGGGCATACCGTCGTAC-C 659 ********************************************************** * consensus_8447#0 GTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTA 252 consensus_8447#1 GTACCGTGCTGTGGGGTGCTGGTAGAGATGCGCTATTCCGAGCAGGGCACGATCGATGTA 719 ************************************************************ consensus_8447#0 CCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCC 312 consensus_8447#1 CCCCGTGATGCCGCCAGTACAGTTCGGAAACGCATTGTACAGATGCTTCCCACCCGGTCC 779 ************************************************************ consensus_8447#0 GAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCAC 372 consensus_8447#1 GAAGTAAGCGCTTGGGCAGCCGGGTGCGGGTACGAAAAACATCACCACCAGATAGAGCAC 839 ************************************************************ consensus_8447#0 CGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACG 432 consensus_8447#1 CGTTAGCAGTCCGATGACCAGCCACTGCTTCTTTAGCCGCACAATGTCCTCGCTGGCACG 899 ************************************************************ consensus_8447#0 GAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGAGCAGGTGCACGGT 492 consensus_8447#1 GAGCAAACGGTTTTGCGACTGCACCTGTACCTGCTGCTCGTGGCAGACCAGTTGGCCAAC 959 *********************************************** *** ** * consensus_8447#0 CGAGACGACCAGGTACGCAATGCCAAACCGCTGCAGTACGCCAAAGATGCGCAGATTGGC 552 consensus_8447#1 --AGTTCTCGAGGAATTCCGCAGCTTTTCCCG---------------------------- 989 ** * *** * * * * * consensus_8447#0 CATGCTGGGACCGTTCATCGAGTTCAGACACAGGCCAATTATGAACAGTTTCACCGAGCG 612 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 AACCGCTATGCTCGACAGGATCGTGCGCTTGGGCACGTTGCGGTTGAGCTGGCCGCGTAA 672 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 CGAGATCGGCACGCACACGCCCATGATGAAGAGAAACCAGGGAAAGACGAGATCGGCCAC 732 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 GTGCAGCCCGTTCCAGGTCGCGTGCTCGATCCACCAGTAGTGGCCGCCGCCACTGTTCAN 792 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 GAAGATCATCAGCATGATCGCGATGCCGCGGAACGTGTCCAAACTTTGCAGCCGCTTCTT 852 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 GGGCGTAACCTGGCCGGAACCTGGCCCGGTTTGGTGTGGTTTGCGGTCGGTTTCTTCGTT 912 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 CGAGCTGTGGGCGGTCTCATCACCGGCCGCTGTATGGGAGGCTGCCGGCTGCTGGAAGCC 972 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 AGACGCGCGGGAACGACGCAGGCCGTACCGTGCCATACGCACGAGACCAAAGACGGCACA 1032 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 CGCGAGCAGTGCAATCGTAAGGAATGGAAGGTATATGTTGACCGGTTCCTTGGCCGTTTC 1092 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 CAGCGTACNNCCATTGCCGTCCGGTCGGACGCTCAGATCGTAAACGCCAAATTCACCCAA 1152 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 TTGTGCGCTGTTAATTTGGCACAGGACGGTGTCATTGTCGAAGGAGTATTGGCCCACATC 1212 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 TCGGTCGAGCAGCCGCAGCCCGAGGCGGCGCGCCGCATCTATCTTCACCGTGGTGTGCCG 1272 consensus_8447#1 ------------------------------------------------------------ consensus_8447#0 TTT 1275 consensus_8447#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||