These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1989 fasta sequence [AAGATGCTCGACTCGAAGGTGAATTATTATACCGGATAATCGCCAAGGGCGGACAACGATCTCGAAGACGGACTGCCAAGTTTAAGGCGAAGATTAACGAGGAGTTGCGCGCGAAACGGTGTCCAGATCTACCAGTTCCCGACCGACGACGAATCGTGCCGGAGGTAAACACCACCATGAACTCGCACATCCCGTTTGCCGTCGTGGCAGTACGGACTTTGTGCGCTCGCAACAAGACGGTCGGCCCCCAGTACCCTGGGTACG-CA-GTGGAGAACGAGGCGCACTGCGACTTTGTGAAGCTGCGCGAAATGCTTATCCGCACCAACATGGAGGATATGCGCGAGAAGACGCACACGCGCCA-TACGAGCTGTACCGGCAGAAGCGGCTGGAGGAGATGGGCTTCACCGATGTGGACAGCGATAACAAGCCGGTCTCGTTCCAGCAAACGTTCGAGGCGAAGCGTAGCAACCATTTGGCCGAGCTGCAGGCGAAGGAGGACGAGGTGCGTCAGATGTTTGTGGTGCGCGTCAAGGAGAAGGAGGCGGAGTTGAAGGAGAGCGAAAAGGAGCTCCATGCCAAATTCGACAAGCTGAAGAAGGACCATGCCGAGGAGAAGCGCAAGCTGGAGGAGCCGCGCAAAAAGCTGGAGGAAGAGTTCGTCGAGTTTAACCGGCGCAAGTCGCAGATGACGGCACACCAC-GACTGACGCTGGGCAAGAGCAAAAAGAAATGAACGACCTAAAGAGGGGCGCTTCTGGTGGTGGTTGTGGGGAGAGCGCCTTCCAGTGAATTTCCCTTTTTTGCCGTTGATTCTCATTGCGTGTGCTTTTGCTCTATTATCTCTCTATGGTTGCAGGACTGAAAAGGCTTGCTTTCAACAATCCCCAGGAAGAGGTTTTTTTTTTGTTTCTATAATGCAAAAAGCGCAATTTTTATTCAC-TTTACCACCATCTTTCCCATGTGTATTAACTTCAAATAATATTTTTTAGGCTTGAAAGTATTTCGTTAAGTTAACTGATTTCATTAAACCCGTTTTCGTTACAACCGAAGC--AGTAAAAAAGCTTTTGCTTAGGAAAGTAAGGAAAACTATCGAACCAAAACAAAGAAGAAACCGAAACAAACGTGCAAAGTTTTTACTAGCAACAATACAACAAAACGAAGCAAAACAAAAGTGTAATGTTAAGAACATTGAACATGTAAAATCTTCAGAAAGGAAATCGTTTTAAACTGAACAAGGAGTAGAGAACGCATAGCCAAAACTAGTATTGCAGTAGGACAAGCGAAACGGAGGATAACAAAGGGTTAGAAGATTTTCTTTTAGCAAAAAGGATTTAGGAAAACGATTTATTCTTGGAAAAGATGCTTCACGTACAAACTATGGCTTTCTCGTAGTAGCTGCCCTGGTTAATAGATAGAGTTTTACCTGCTCAACCAAAAAAAGAAGCAAAAAGGAGATTAACGAAGGAAGAACAAAATTCACCTAACAAAAAAAAAGTAGCGCGATATCAATTTTAGTTGAAGCATAACGTTCCGACCGACGAAACCAGCCACAAGCCAGTCTCACGTTGAAAATGAACGGTTACAGCACGGAAAATGCGATATAAACAGGGTGAGGATTAGGCAATCGACAACCATGTTTGTCCCCGCCTTTAACGTGTCTGCCGTTCGGTGAAACTGTGTCCATTTGTGCGTTCGTAATTATAAAAATGCTTGAAACAAAAGCCAAACCCGTTCCACGTTCTTTATCGGTTAGATCAAATGCAACCGTTTTAAATTGGTCTACTCATCGCTTTATTTTAAAATCAAAAGCACACGAAAAGCAAGCAAGAATTACAGAAAAAGTTAAGAGAAAAACATATAAGTGGAGCAAACGAGAAAGAAGCGACCAAATTTTATTTACTTATTTTTCGGTTTTGATTGACAATGCTTAACCGCAAAATTGCCGGCAGAGTTTTTATCCGGAGGCTACGTGTCACAACCACGTCTGTCT] [-] EMBL AL695162 [AAGATGCTCGACTCGAAGGTGAATTATTATACCGGATAATCGCCAAGGGCGGACAACGATCTCGAAGACGGACTGCCAAGTTTAAGGCGAAGATTAACGAGGAGTTGCGCGCGAAACGGTGTCCAGATCTACCAGTTCCCGACCGACGACGAATCGTGCCGGAGGTAAACACCACCATGAACTCGCACATCCCGTTTGCCGTCGTGGCAGTACGGACTTTGTGCGCTCGCAACAAGACGGTCGGCCCCCAGTACCCTGGGTACGTCA GTGGAGAACGAGGCGCACTGCGACTTTGTGAAGCTGCGCGAAATGCTTATCCGCACCAACATGGAGGATATGCGCGAGAAGACGCACACGCGCCA TACGAGCTGTACCGGCAGAAGCGGCTGGAGGAGATGGGCTTCACCGATGTGGACAGCGATAACAAGCC GTCTCGTTCCAGCAAACGTTCGA GCGAAGCGTA CAACCATT GCCGAG TGCAGcanacctc ] [-] EMBL CNS09O0K [ tG CAGGTGGAGAACGAGGCGCACTGCGACTTTGTGAAAGTGCGCGAAATGCTTATCCGCACCAACATGGAGGATATGCGCGAGAAGACGCACACGCGCCACTATGAGCTGTACCGGCAGAAGCGGCTGGAGGAGATGGGCTTCACCGATGTGGACAGCGATAACAAGCCGGTCTCGTTCCAGCAAACGTTCGAGGCGAAGCGTAGCAACCATTTGGCCGAGCTGCAGGCGAAGGAGGACGAGGTGCGTCAGATGTTTGTGGTGCGCGTCAAGGAGAAGGAGGCGGAGTTGAAGGAGAGCGAAAAGGAGCTCCATGCCAAATTCGACAAGCTGAAGAAGGACCATGCCGAGGAGAAGCGCAAGCTGGAGGAGCCGCGCAAAAAGCTGGAGGAAGAGTTCGTCGAGTTTAACCGGCGCAAGTCGCAGATGACGGCACACCAC GACTGACGCTGGGCAAGAGCAAAAAGAAATGAACGACCTAAAGAGGGGCGCTTCTGGTGGTGGTTGTGGGGAGAGCGCCTTCCAGTGAATTTCCCTTTTTTGCCGTTGATTCTCATTGCGTG ] [+] EMBL BM616039 [ ccgGCGGCTGGAGGAGATGGGCTTCACCGATGTGGACAGCGATAACAAGCCGGTCTCGTTCCAGCAAACGTTTGAGGCGAAGCGTAGCAACCATTTGGCCGAGCTGCAGGCGAAGGAGGACGAGGTGCGTCAGATGTTTGTGGTGCGCGTCAAGGAGAAGGAGGCGGAGTTGAAGGAGAGCGAAAAGGAGCTCCATGCCAAATTCGACAAGCTGAAGAAGGACCATGCCGAGGAGAAGCGCAAGCTGGAGGAGTCGCGCAAAAAGCTGGAGGAAGAGTTCGTCGAGTTTAACCGGCGCAAGTCGCAGATGACGGCACACCACACGCTGACGCTGGGCAAGAGCAAAAAGAAATGAACGAGCTAAAGAGGGGCGCTTCTGGTAGTGGTTGTGGGGAGAGCGCCTTCCAGTGAACTTCACTTTTTTGCCGTTGATTCTCATTGCGTGTGCTTTTGCTCTATTATCTCTCTATGGTTGCAGGACTGAAAAGGCTTGCTTTCAACAATCCCCAGGAAGAGGTTTTTTTTTTGTTTCTATAATGCAAAAAGCGCAATTTTTATTCAC TTTACCACCATCTTTCCCATGTGTATTAACTTCAAATAATATTTTTTAGGCTTGAAAGTATTTCGTTAAGTTAACTGATTTCATTAAACCCGTTTTCGTTACAACCGAAGC AGTAAAAAAGCTTTTGCTT ] [-] EMBL AGA283230 [ GCTTTTGCTCTATTATCTCTCTATGGTTGCAGGACTGAAAAGGCTTGCTTTCAACAATCCCGAGGAAGAGG TTTTTTTTGTTTCTATAATGCAAAAAGCGCAATTTTGATTCACTTTTTCCACCATCTTTCTCATGTGTATTAACTTCAAACAATATTTTTTAGGCTTGAAAGTATTTCGTAAAGTTAACTGATTTCATTAAACCCGTTTTCGTTACAACCGAAGCAGAGTAGACAAGCTTTTGCGTAGGAAAGTAAGGAAAACTATCGAACCAAAACAAAGAAGAAACCGAAACAAACGTGCAAAGTTTTTACTAGCAACAATACAACAAAACGAAGCAAAACAAAAGTGTAATGTTAAGAACATTGAACATGTAAAATCTTCAGAAAGGAAATCGTTTTAAACTGAACAAGGAGTAGAGAACGCATAGCCAAAACTAGTATTGCAGTAGGACAAGCGAAACGGAGGATAACAAAGGGTTAGAAGATTTTCTTTTAGCAAAAAG ] [+] EMBL AGA280935 [ ACTAGCAACAATACAACAAAACGAAGCAAAACAAAAGTGTAATGTTAAGAACATTGAACATGTAAAATCTTCAGAAAGGAAATCGTTTTAAACTGAACAAGGAGTAGAGAACGCATAGCCAAAACTAGTATTGCAGTAGGACAAGCGAAACGGAGGATAACAAAGGGTTAGAAGATTTTCTTTTAGCAAAAAGGATTTAGGAAAACGATTTATTCTTGGCAAAGATGCTTCATGTACAAACTATGGCTTTCTCGTAGTAGC ] [+] EMBL BM638570 [ ccgGAACAAGGAGTAGAGAACGCATAGCCAAAACTAGTATTGCAGTAGGACAAGCGAGACGGAGGATAACAAAGGGTTAGAAGATTTTCTTTTAGCAAAAAGGATTTAGGAAAACGATTTATTCTTGGAAAAGATGCTTCACGTACAAACTATGGCTTTCTCGTAGTAGCTGCCCTGGTTAATAGATAGAGTTTTACCTGCTCAACCAAAAAAAGAAGCAAAAAGGAGATTAACGAAGGAAGAACAAAATTCACCTAACAAAAAAAAAGTAGCGCGATATCAATTTTAGTTGAAGCATAACGTTCCGACCGACGAAACCAGCCACAAGCCAGTCTCACGTTGAAAATGAACGGTTACAGCACGGAAAATGCGATATAAACAGGGTGAGGATTAGGCAATCGACAACCATGTTTGTCCCCGCCTTTAACGTGTCTGCCGTTCGGTGAAACTGTGTCCATTTGTGCGTTCGTAATTATAAAAATGCTTGAAACAAAAGCCAAACCCGTTCCACGTTCTTTATCGGTTAGATCAAATGCAACCGTTTTAAATTGGTCTACTCATCGCTTTATTTTAAAATCAAAAGCACACGAAAAGCAAGCAAGAATTACAGAAAAAGTTAAGAGAAAAACATATAAGTGGAG ] [+] EMBL BM582207 [ ccgGGAGGATAACAAAGGGTTAGAAGATTTTCTTTTAGCAGAAAGGATTTAGGAAAACGATTTATTCTTGGAAAAGATGCTTCACGTACAAACTATGGCTTTCTCGTAGTAGCTGCCCTGGTTAATAGATAGAGTTTTACCTGCTCAACCAAAAAAAGAAGCAAAAAGGAGATTAACGAAGGAAGAACAAAATTCACCTAACAAAAAAAAAGTAGCGCGATATCAATTTTAGTTGAAGCATAACGTTCCGACCGACGAAACCAGCCACAAGCCAGTCTCACGTTGAAAATGAACGGTTACAGCACGGAAAATGCGATATAAACAGGGTGAGGATTATGCAATCGACAACCATGTTTGTCCCCGCCTTTAACGTGTCTGCCGTTCGGTGAAACTGTGTCCATTTGTGCGTTCGTAATTATAAAAATGCTTGAAACAAAAGCCAAACCCGTTCCACGTTCTTTATCGGTTAGATCAAATGCAACCGTTTTAAATTGGTCTACTCATCGCTTTATTTTAAAATCAAAAGCgc ] [-] EMBL CNS09BJF [ CGTAGTAGCTGCACTGGTTAATAGATAGAGTTATACTTGCTCAACCAAAAAAAGAAGCAAAAAGGAGATTAACGAAGGAAGAACAAAATTCACC ] [-] EMBL AGA282564 [ TGTCTGCCGTTCGGTGAAACTGTGTCCATTTGTGCGTTCGTAATTATAAAAATGCTTGAAACAAAAGCCAAACCCGTTCCACGTTCTTTATCGGTTAGATCAAATGCAACCGTTTTAAATTGGTCTACTCATCGCTTTATTTTAAAATCAAAAGCACACGAAAAGCAAGCAAGAATTACAGAAAAAGTTAAGAGAAAAACATATAAGTGGAGCAAACGAGAAAGAAGCGACCAAATTTTATTTACTTATTTTTCGGTTTTGATTGACAATGCTTAACCGCAAAATTGCCGGCAGAGTTTTTATCCGGAGGCTACGTGTCACAACCACGTCTGTCT] consensusID : consensus_8461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [GGCGAAGATTAACGAGGAGTTGCGCGCGAACGGCGTCCAGATCTACCAGTTCCCGACCGACGACGAATCGGTGGCGGAGGTGAACACCACCATGAACTCGCACATCCCGTTTGCCGTCGTGGGCAGTACGGACTTTGTGCGCGTCGGCAACAAAACGGTGCGAGCCCGCCAGTACCCGTGGGGTACGGTGCAGGTGGAGAACGAGGCGCACTGCGACTTTGTG] [+] EMBL CNS09BJE [GGCGAAGATTAACGAGGAGTTGCGCGCGAACGGCGTCCAGATCTACCAGTTCCCGACCGACGACGAATCGGTGGCGGAGGTGAACACCACCATGAACTCGCACATCCCGTTTGCCGTCGTGGGCAGTACGGACTTTGTGCGCGTCGGCAACAAAACGGTGCGAGCCCGCCAGTACCCGTGGGGTACGGTGCAGGTGGAGAACGAGGCGCACTGCGACTTTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8461#0 AAGATGCTCGACTCGAAGGTGAATTATTATACCGGATAATCGCCAAGGGCGGACAACGAT 60 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 CTCGAAGACGGACTGCCAAGTTTAAGGCGAAGATTAACGAGGAGTTGCGCGCGAAACGGT 120 consensus_8461#1 -------------------------GGCGAAGATTAACGAGGAGTTGCGCGCGAA-CGGC 34 ****************************** *** consensus_8461#0 GTCCAGATCTACCAGTTCCCGACCGACGACGAATCG-TGCCGGAGGTAAACACCACCATG 179 consensus_8461#1 GTCCAGATCTACCAGTTCCCGACCGACGACGAATCGGTGGCGGAGGTGAACACCACCATG 94 ************************************ ** ******* ************ consensus_8461#0 AACTCGCACATCCCGTTTGCCGTCGTGG-CAGTACGGACTTTGTGCGCTC--GCAACAAG 236 consensus_8461#1 AACTCGCACATCCCGTTTGCCGTCGTGGGCAGTACGGACTTTGTGCGCGTCGGCAACAAA 154 **************************** ******************* ******* consensus_8461#0 ACGGTCGG---CCCCCAGTACCCT--GGGTACGC----AGTGGAGAACGAGGCGCACTGC 287 consensus_8461#1 ACGGTGCGAGCCCGCCAGTACCCGTGGGGTACGGTGCAGGTGGAGAACGAGGCGCACTGC 214 ***** * ** ********* ******* ********************* consensus_8461#0 GACTTTGTGAAGCTGCGCGAAATGCTTATCCGCACCAACATGGAGGATATGCGCGAGAAG 347 consensus_8461#1 GACTTTGTG--------------------------------------------------- 223 ********* consensus_8461#0 ACGCACACGCGCCATACGAGCTGTACCGGCAGAAGCGGCTGGAGGAGATGGGCTTCACCG 407 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 ATGTGGACAGCGATAACAAGCCGGTCTCGTTCCAGCAAACGTTCGAGGCGAAGCGTAGCA 467 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 ACCATTTGGCCGAGCTGCAGGCGAAGGAGGACGAGGTGCGTCAGATGTTTGTGGTGCGCG 527 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 TCAAGGAGAAGGAGGCGGAGTTGAAGGAGAGCGAAAAGGAGCTCCATGCCAAATTCGACA 587 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 AGCTGAAGAAGGACCATGCCGAGGAGAAGCGCAAGCTGGAGGAGCCGCGCAAAAAGCTGG 647 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 AGGAAGAGTTCGTCGAGTTTAACCGGCGCAAGTCGCAGATGACGGCACACCACGACTGAC 707 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 GCTGGGCAAGAGCAAAAAGAAATGAACGACCTAAAGAGGGGCGCTTCTGGTGGTGGTTGT 767 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 GGGGAGAGCGCCTTCCAGTGAATTTCCCTTTTTTGCCGTTGATTCTCATTGCGTGTGCTT 827 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 TTGCTCTATTATCTCTCTATGGTTGCAGGACTGAAAAGGCTTGCTTTCAACAATCCCCAG 887 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 GAAGAGGTTTTTTTTTTGTTTCTATAATGCAAAAAGCGCAATTTTTATTCACTTTACCAC 947 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 CATCTTTCCCATGTGTATTAACTTCAAATAATATTTTTTAGGCTTGAAAGTATTTCGTTA 1007 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 AGTTAACTGATTTCATTAAACCCGTTTTCGTTACAACCGAAGCAGTAAAAAAGCTTTTGC 1067 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 TTAGGAAAGTAAGGAAAACTATCGAACCAAAACAAAGAAGAAACCGAAACAAACGTGCAA 1127 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 AGTTTTTACTAGCAACAATACAACAAAACGAAGCAAAACAAAAGTGTAATGTTAAGAACA 1187 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 TTGAACATGTAAAATCTTCAGAAAGGAAATCGTTTTAAACTGAACAAGGAGTAGAGAACG 1247 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 CATAGCCAAAACTAGTATTGCAGTAGGACAAGCGAAACGGAGGATAACAAAGGGTTAGAA 1307 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 GATTTTCTTTTAGCAAAAAGGATTTAGGAAAACGATTTATTCTTGGAAAAGATGCTTCAC 1367 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 GTACAAACTATGGCTTTCTCGTAGTAGCTGCCCTGGTTAATAGATAGAGTTTTACCTGCT 1427 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 CAACCAAAAAAAGAAGCAAAAAGGAGATTAACGAAGGAAGAACAAAATTCACCTAACAAA 1487 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 AAAAAAGTAGCGCGATATCAATTTTAGTTGAAGCATAACGTTCCGACCGACGAAACCAGC 1547 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 CACAAGCCAGTCTCACGTTGAAAATGAACGGTTACAGCACGGAAAATGCGATATAAACAG 1607 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 GGTGAGGATTAGGCAATCGACAACCATGTTTGTCCCCGCCTTTAACGTGTCTGCCGTTCG 1667 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 GTGAAACTGTGTCCATTTGTGCGTTCGTAATTATAAAAATGCTTGAAACAAAAGCCAAAC 1727 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 CCGTTCCACGTTCTTTATCGGTTAGATCAAATGCAACCGTTTTAAATTGGTCTACTCATC 1787 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 GCTTTATTTTAAAATCAAAAGCACACGAAAAGCAAGCAAGAATTACAGAAAAAGTTAAGA 1847 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 GAAAAACATATAAGTGGAGCAAACGAGAAAGAAGCGACCAAATTTTATTTACTTATTTTT 1907 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 CGGTTTTGATTGACAATGCTTAACCGCAAAATTGCCGGCAGAGTTTTTATCCGGAGGCTA 1967 consensus_8461#1 ------------------------------------------------------------ consensus_8461#0 CGTGTCACAACCACGTCTGTCT 1989 consensus_8461#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||