These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 797 fasta sequence [CCCGAGGATTTNGACGGAGGAGAAGTACAAGAAGATCGCATGACGAACCGGATGTTCTGCGACAAGATCAAGGTGTGCGAGGGTTCGCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGACCCAGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGG-CGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGCCGCCGGATTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGGAGGCGCTCGAGCAGGCGCAAATCCTTAAAACGAAAGCGATGCGCGAAAAGGAGGAGCTGCGCACGATCAATCGGTACAAGTTTTCG-CTGATCCGCGTGCGGTTCCCGAACGGGGTGTACCTGCAGGGAACGTTCAA-CGTGTACGAGAAGTTTGGCCAGGTGTGCGAGTTTGT-GCAGTCGTGCCTGATGCACGAG-TCGGCCGATTTTGCGCTCGTCTCGCCCGGCG-GGCTGAAGTACGACGATCCGGACGATCTGGACCGG-TCG-CTGTACGATCTGCGGCTGGTGCCGACGGTGGTGTTTAACTTTTGCTACGAAAATGAGTCGAAGAGCTTGACCGATTTCCTGAAGGAGGAGCTGATGCTACTGATTCAATCGTTTTAAAACCCGTTCCAGGGCGACGGGGGCAGCTCAATCGCGATGGCATCTGTCCTCCTACTCCTACTGCGTGTT] [+] EMBL AL695748 [CCCGAGGATTTNGACGGAGGAGAAGTACAAGAAGATCGCATGACGAACCGGATGTTCTGCGACAAGATCAAGGTGTGCGAGGGTTCGCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGACCCAGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGG CGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGCCGCCGGATTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGGAGGCGCTCGAGCAGGCGCAAATCCTTAAAACGAAAGCGATGCGCGAAAAGGAGGAGCTGCGCACGATCAATCGGTACAAGTTTTCGCCTGATCCGCGTGCGGTTCCCGAACGGGGTGTACCTGCAGGGAACGTTCAACCGTGTACGAGAAGTTTGGCCAGGTGTGCGAGTTTGTCGCANTCGTGCCTGATGCACGAGCTCGGCCGATTTTGCGCTCGTCTCGCCCGGCGCGGCTGAAGTACGACGATCCGGACGATCTGGACCGGTTCGCCTGTACGATCTGCGGCTGGTGCCGACGGTGGTGTT ] [+] EMBL BX627402 [ AGGGTTCGCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGACGGCGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATCCGGAGTGCTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGCCGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGCCGCCGGACTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGGAGGCGCTCGAGCAGGCGCAAATCCTTAAAACGAAAGCGATGCGCGAAAAGGAGGAGCTGCGCACGATCAATCGGTACAAGTTTTCG CTGATCCGCGTGCGGTTCCCGAACGGGGTGTACCTGCAGGGGACGTTCAA CGTGTACGAGAAGTTTGGGCAGGTGTGCGAGTTTGT GCAGTCGTGCCTGATGCACGAG TCGGCCGATTTTGCGCTCGTCTCGCCCGGCG GGCTGAAGTACGACGATCCGGACGATCTGGACCGG TCG CTGTACGATCTGCGGCTGGTGCCGACNGTGGTGNTTAACTTTTGCTACGAAAATGAGTCGAA AGCTTGATCGANTTCCTGAAGGAGGAGCTGATGCTACT ] [-] EMBL AGA282376 [ GCTGCGCACGATCAATCGGTACAAGTTTTCG CTGATCCGCGTGCGTTTCCCGAACGGGGTGTACCTGCAGGGAACGTTCAA CGTGTACGAGAAGTTTGGCCAGGTGTGCGAGTTTGT GCAGTCGTGCCTGATGCACGAG TCGGCCGATTTTGCGCTCGTCTCGCCCGGCG GGCTGAAGTACGACGATCCGGACGATCTGGACCGG TCG CTGTACGATCTGCGGCTGGTGCCGACGGTGGTGTTTAACTTTTGCTACGAAAATGAGTCGAAGAGCTTGACCGATTTCCTGAAGGAGGAGCTGATGCTACTGATTCAATCGTTTTAAAACCCGTTCCAGGGCGACGGGGGCAGCTCAATCGCGATGGCATCTGTCCTCCTACTCCTACTGCGTGTT] [-] EMBL AGA285748 [ CGGGGTTTACCTGCAGGGAACGTTCAA CGTGTACGAGAAGTTTGGCCAGGTGTGCGAGTTTGT GCAGTCGTGCCTGATGCACGAG TCGGCCGATTTTGCGCTCGTCTCGCCCGGCG GGCTGAAGTACGACGATCCGGACGATCTGGACCGG TCG CTGTACGATCTGCGGCTGGTGCCGACGGTGGTGTTTAACTTTTGCTACGAAAATGAGTCGAAGAGCTTGACCGATTTCCTGAAGGAGGAGCTGATGCTACTGATTCAATCGTTTTAAAACCCGTTCCAGGGCGACGGGGGCAGCTCAATCGCGATGGCATCTGTCCTCCTACTCCTACTGCGTGTT] [-] EMBL AGA285612 [ GTTTGT GCAGTCGTGCCTGATGCACGAG TCGGCCGATTTTGCGCTCGTCTCGCCCGGCG GGCTGAAGTACGACGATCCGGACGATCTGGACCGG TCG CTGTACGATCTGCGGCTGGTGCCGACGGTGGTGTTTAACTTTTGCTACGAAAATGAGTCGAAGAGCTTGACCGATTTCCTGAAGGAGGAGCTGATGCTACTGATTCAATCGTTTTAAAACCCGTTCCAGGGCGACGGGGGCAGCTCAATCGCGATGGCATCTGTCCTCCTACTCCTACTGCGTGTT] consensusID : consensus_8465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 651 fasta sequence [GCTGGCCCGCTTTGAGGGGAAGGACAAGAAAGAGTTCAACACGTCGCTAGCGGCAATCCGGGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGCGGCGGTCCCACCGAGCAGGAAGGGTCCGCGGAGGACGGCACCGCCCAGGAGGCACGCAAAGATTACGCGGTGCAGGGCGTGTTCTTCCGCTGCCCAATGATAGGGGACGAGATTCTGCCGTACAAGGAGTGGAAGGGCAGAATAAAGGAGTTTCTGTACGAGCAGCTGGCGGCCGACCGGGGCCTCACCGCCTGTCTCATCATCTACAACTGCAATCCCAAAGATAAGGCGGA-GGTGTGCATCGAAACGCTCTCGAAATGCATCGAAAACATCATCAACAACCCGACGGAGGAGAAGTACAAGAAGATCCGCATGACGAACCGGATGTTCTGCGACAAGATCAAGGTGTGCGAGGGTTCGCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATCCGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGCCGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTTGCCGTCGC] [+] EMBL AGA280753 [GCTGGCCCGCTTTGAGGGGAAGGACAAGAAAGAGTTCAACACGTCGCTAGCGGCAATCCGGGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGCGGCGGTCCCACCGAGCAGGAAGGGTCCGCGGAGGACGGCACCGCCCAGGAGGCACGCAAAGATTACGCGGTGCAAGGCGTGTTCTTCCGCTGCCCAATGATAGGGGACGAGATTCTGCCGTACAAGGAGTGGAAGGGCAGAATAAAGGAGTTTCTGTACGAGCAGCTGGCGGCCGACCGGGGCCTCACCGCCTGTCTCATCATCTACAACTGCAATCCCAAAGATAAGGCGGA GGTGTGCATCGAAACGCTCTCGAAATGCATCGAAAACATCATCA ] [+] EMBL AGA284441 [GCTGGCCCGCTTTGAGGGGAAGGACAAGAAAGAGTTCAACACGTCGCTAGCGGCAATCCGGGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGCGGCGGTCCCACCGAGCAGGAAGGGTCCGCGGAGGACGGCACCGCCCAGGAGGCACGCAAAGATTACGCGGTGCAGGGCGTGTTCTTCCGCTGCCCAATGATAGGGGACGAGATTCTGCCGTACAAGGAGTGGAAGGGCAGAATAAAGGAGTTTCTGTACGAGCAGCTGGCGGCCGACCGGGGCCTCACCGCCTGTCTCATCATCTACAACTGCAATCCCAAAGATAAGGCGGAGGGTGT ] [+] EMBL AGA284309 [GCTGGCCCGCTTTGAGGGGAAGGACAAGAAAGAGTTCAACACGTCGCTAGCGGCAATCCGGGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGCGGCGGTCCCACCGAGCAGGAAGGGTCCGCGGAGGACGGCACCGCCCAAGAGGCACGCAAAGATTACGCGGTGCAGGGCGTGTTCTTCCGCTGCCCAATGATAGGGGACGAGATTCTGCCG ] [+] EMBL BM656799 [ ccGAAAGAGTTCAACACGTCGCTAGCGGCAATCCGGGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGGGGCGGTCCCACCGAGCAGGAAGGGTCCGCGGAGGATGGCACCGCCCAGGAGGCACGCAAAGATTACGCGGTGCAGGGCGTGTTCTTCCGCTGCCCAATGATCGGGGACGAGATTCTCCCGTACAAGGAGTGGAAGGGCAGAATAAAGGAGTTTCTGTACGAGCAGCTGGCGGCCGACCGGGGCCTCACCGCCTGTCTCATCATCTACAACTGCAATCCCAAAGACAGGGCGGA GGTGTGCATCGAAACGCTGTCGAAATGCATCGAAAACATCATCAACAACCCGACGGAGGAGAAGTACAAGAAGATCCGCATGACGAACCGGATGTTCTGCGACAAGATCAAGGTGTGCGAGGGTTCGCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATCCGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGCCGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTTGCCGTCGC] consensusID : consensus_8465#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [AGAAATTCCCCGAGGTTTTCGCTCGACTTTCTGCACGCGGGCCGGCTTCGCCGATGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATCCGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGNCGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGCCGCCGGACTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGGAGGCGCTCGAGCAGGCGCAAATCCTGAAAACGAAAGCGATGCGCGAAAAGGAGGAGCTGCGCACGATCAATCGGTACAAGTTTTCGCTGATCCGCGTGCGGTTCCCGAACGGGGTGTACCTGCAGGGGGACGTTCAACGTGTACGAGAAGTTTGG] [+] EMBL AL694864 [AGAAATTCCCCGAGGTTTTCGCTCGACTTTCTGCACGCGGGCCGGCTTCGCCGATGATCGAGCTGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATCCGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGNCGAACCGATACCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGCCGCCGGACTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGGAGGCGCTCGAGCAGGCGCAAATCCTGAAAACGAAAGCGATGCGCGAAAAGGAGGAGCTGCGCACGATCAATCGGTACAAGTTTTCGCTGATCCGCGTGCGGTTCCCGAACGGGGTGTACCTGCAGGGGGACGTTCAACGTGTACGAGAAGTTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8465#0 ---CCCGAGGATTTNGACGGAGGAGAAGTACAAGAAGATCGCATGACGAACCGGATGTTC 57 consensus_8465#2 ------------------------------------------------------------ consensus_8465#1 GCTGGCCCGCTTTGAGGGGAAGGACAAGAAAGAGTTCAACACGTCGCTAGCGGCAATCCG 60 consensus_8465#0 TGCG-ACAAGATCAAGGTGTGCGAGGGTT-CGCTCGACTTTCTGCACGCGG-CCGGCTTC 114 consensus_8465#2 -----------AGAAATTCCCCGAGGTTTTCGCTCGACTTTCTGCACGCGGGCCGGCTTC 49 consensus_8465#1 GGCGCAGGTGCGCAAAGAGCTCGAGGCGGAAAAGAAAGCCAAAGAGGGCGG--CGGTCCC 118 ** ***** * * **** *** * consensus_8465#0 GCCGA-GATCGAGC-TGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGACC 172 consensus_8465#2 GCCGATGATCGAGC-TGGATGGGGAGCCGCACCTGATCTGGTCGGAGGACAACATCGATC 108 consensus_8465#1 ACCGAGCAGGAAGGGTCCGCGGAGGACGGCACC--GCCCAGGAGGCACGCAAAGATTACG 176 **** * ** * ** * * ***** * * ** *** * consensus_8465#0 CAGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGC-GAACCGATACCGGTC- 230 consensus_8465#2 CGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCTGAAAGCGGNCGAACCGATACCGGTC- 167 consensus_8465#1 CGGTGCAGG-GCGTGTTCTTCCGCTGCC--CAATGATAGGGGACGAGATTCTGCCGTACA 233 * * * ** * * * **** * *** ** ** ** * *** * consensus_8465#0 --GAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGC 288 consensus_8465#2 --GAGCTGGACCGCAATCTGCAGGTGCTGCTGCCGTCGCAGGTGAAGCGCAGCAACTTGC 225 consensus_8465#1 AGGAGTGGAAGGGCAGAATAAAGGAGTTTCTGTACGAGCAGCTGGCGGCCGACCGGGGCC 293 *** * * *** * *** * * *** **** ** * * * * consensus_8465#0 CGCCGGATTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGG 348 consensus_8465#2 CGCCGGACTTTTTCCGCATCTCGCCGGAAGAGATCAAGCGCGAGCAGCAGCTGCGCACGG 285 consensus_8465#1 TCACCGCCTGTCTCATCATCTACAACTGCAATCCCAAAGATAAGGCGGAGGTGTGCATCG 353 * * * * ** ***** * *** ** * ** ** *** * consensus_8465#0 AGGCGCTC---GAGCAGGCGCAAATCCTTAAAACGAAAGCGATGCGCGAAAAG---GAGG 402 consensus_8465#2 AGGCGCTC---GAGCAGGCGCAAATCCTGAAAACGAAAGCGATGCGCGAAAAG---GAGG 339 consensus_8465#1 AAACGCTCTCGAAATGCATCGAAAACATCATCAACAACCCGACGGAGGAGAAGTACAAGA 413 * ***** * *** * * * * ** *** * ** *** ** consensus_8465#0 AGCTGCGCACGATCAATCGGTACAAGTTTTCGCTGATCCGCGTGCGGTTCCCGAACGGG- 461 consensus_8465#2 AGCTGCGCACGATCAATCGGTACAAGTTTTCGCTGATCCGCGTGCGGTTCCCGAACGGG- 398 consensus_8465#1 AGATCCGCATGACGAACCGG-----ATGTTCTGCGACAAGATCAAGGTGTGCGAGGGTTC 468 ** * **** ** ** *** * *** ** * *** *** * consensus_8465#0 GTGTACCTGCAGGGA-ACGTTCAACGTGTACGAGA---AGTTTGGCCAGGTGTGCGAGTT 517 consensus_8465#2 GTGTACCTGCAGGGGGACGTTCAACGTGTACGAGA---AGTTTGG--------------- 440 consensus_8465#1 GCTCGACTTTCTGCACGCGGCCGGCTTCGCCGAGATCGAGCTGGATGGGGAGCCGCACCT 528 * ** * ** * * * ***** ** * * consensus_8465#0 TGTGCAGTCGTGCCTGATGCACGAGTCGGCCGATTTTGCGCTCGTCTCGCCCGGCGGGCT 577 consensus_8465#2 ------------------------------------------------------------ consensus_8465#1 GATCTGGTCGGAGGACAACATCGATCCGGAGTGTTCGCTGGAGGTGCTGCTGGAGGCGCT 588 consensus_8465#0 GAAGTACGACGATCCGGACGATCTGGACCGGTCGCTGTACGATCTGCGGCTGGTGCCGAC 637 consensus_8465#2 ------------------------------------------------------------ consensus_8465#1 GAAAGCGGCCGAACCGATA---CCGGTCGAGCTGGACCGCAATCTGCAGGTGCTGCTTGC 645 consensus_8465#0 GGTGGTGTTTAACTTTTGCTACGAAAATGAGTCGAAGAGCTTGACCGATTTCCTGAAGGA 697 consensus_8465#2 ------------------------------------------------------------ consensus_8465#1 CGTCGC------------------------------------------------------ 651 consensus_8465#0 GGAGCTGATGCTACTGATTCAATCGTTTTAAAACCCGTTCCAGGGCGACGGGGGCAGCTC 757 consensus_8465#2 ------------------------------------------------------------ consensus_8465#1 ------------------------------------------------------------ consensus_8465#0 AATCGCGATGGCATCTGTCCTCCTACTCCTACTGCGTGTT 797 consensus_8465#2 ---------------------------------------- consensus_8465#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||