These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 740 fasta sequence [CGCGGTCCGAAGAAACATTTGAAGCGTTTAAATGCTCCACGAGGATGGATGTTGGACAAGACCGGCGGTACCTTCGCGCCACGTCCGTCCACCGGCCCACACAAGCTGCGCGAATCGCTGCCGCTGGTGATCTTCCTGCGTAACCGCCTGAAGTACGCACTGACCAACAGCGAGGTGACGAAGATTGTGATGCAGCGTCACGTCAAGATCGACGGCAAGGTTCGCACCGATCCGAACTACCCGGCCGGATTCATGGGTACGTATTCCAGTTTTAGCAGAAGAATGTTAGCTTAGCAACTGGAGAGGAAGAAACAGTGGGGTGTGGTGGTAATGGCGCTATCGAAGCGGGCTAGCGAATGAAACAAGCGACGTCTGTCAAATTAAAGTTGCCAAGAGGAACATTTCTCCATCGACGGTCGCTGAAGGCATTGCTAGTGAATACTAGATGGCCTCATCAGTAACATAACTGACGGAGAGACAGTACGAATTGTGTGAATCAAGCAAATGTGTAGTTCCTAACGGGTTTGTTGAGACAATGTTTAAGTGTATTAATGTTTGGAAACTGATTCCTAATGGAGAAAATTGAGGGAAAATCGGTCCTGTCAAAACACGGTAAACACACTGGGGTTTAGCTCAGTATGGGCAAAAGGAAGCATTTCATATTACGCCCAATCGAAGCGGGTTTAGCGAAATAATAAGCATCGCCCGTCAAAAATGTGGCCAGAGTAAAGTTACTCCAT] [+] EMBL BX605923 [CGCGGTCCGAAGAAACATTTGAAGCGTTTAAATGCTCCACGAGGATGGATGTTGGACAAGACCGGCGGTACCTTCGCGCCACGTCCGTCCACCGGCCCACACAAGCTGCGCGAATCGCTGCCGCTGGTGATCTTCCTGCGTAACCGCCTGAAGTACGCACTGACCAACAGCGAGGTGACGAAGATTGTGATGCAGCGTCACGTCAAGATCGACGGCAAGGTTCGCACCGATCCGAACTACCCGGCCGGATTCATGGGTACGTATTCCAGTTTTAGCAGAAGAATGTTAGCTTAGCAACTGGAGAGGAAGAAACAGTGGGGTGTGGTGGTAATGGCGCTATCGAAGCGGGCTAGCGAATGAAACAAGCGACGTCTGTCAAATTAAAGTTGCCAAGAGGAACATTTCTCCATCGACGGTCGCTGAAGGCATTGCTAGTGAATACTAGATGGCCTCATCAGTAACATAACTGACGGAGAGACAGTACGAATTGTGTGAATCAAGCAAATGTGTAGTTCCTAACGGGTTTGTTG ] [+] EMBL BX607397 [ TGAAGCGTTTAAATGCTCCACGAGGATGGATGTTGGACAAGACCGGCGGTACCTTCGCGCCGCGTCCGTCCACCGGCCCACACAAGCTGCGCGAATCGCTGCCGCTGGTGATCTTCCTGCGTAACCGCCTGAAGTACGCACTGACCAACAGCGAGGTGACGAAGATTGTGATGCAGCGTCACGTCAAGATCGACGGCAAGGTCCGCACCGATCCGAACTACCCGGCCGGATTCATGGGTACGTATTCCAGTTTTAGCAGAAGAATGTTAGCTTAGCAACTGGAGAGGAAGAAACAGTGGGGTGTGGTGGTTATGGCGCTATCGAAGCGGGCTAGCGAATGAAACAAGCGACGTCTGTCAAATTAAAGTTGCCAAGAGGAACATTTCTCCATCGACGGTCGCTGAAGGCATTGCTAGTGAATACTAGATGGCCTCATCAGTAACATAACTGACGGAGAGACAGTACGAATTGAGTGAATCAAGCAAATGTGAAGTTCCTAACGGGTTTGCTGAGACAATGTTTAAGTGTATTAATGTTTGGAAACTGATTCCTAATGGAGAAAATTGAGGGAAAATCGGTCCTGTCAAAACACGGTAAACACACTGGGGTTTAGCTCAGTATGGGCAAAAGGAAGCATTTCATATTACGCCCAATCGAAGCGGGTTTAGCGAAATAATAAGCATCGCCCGTCAAAAATGTGGCCAGAGTAAAGTTACTCCAT] consensusID : consensus_8469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 694 fasta sequence [CCGGTGCGAACGAACTGTCTTCCCTGCATCGGTGCTCTACGACATACCTCCCCTGAGTGCTCATATCCCCCCTCCCACTCGTACGGTGTTATTGATTGTTTTAAAAGAAATCTCTGTTTTTCTCCTCCACCCCTATCCTTTTTGCTCCCCGCCATCTTTTAGCTCGACCGGAAAAGCAAAGAGAGCAACACCCCACCACCACCAGGGCCATAAGGGGGCAGGATGGCATTCAGCGTGCTGAACACGGTGGCGAAGCGCACCGCCGCGAACGTTTATGTAACCGGCGGCGGGCTGCTGAAAAATGTCGCCGCTTTATGTAACGGGCAGCAGCCGGCCCGGTCCGCCGGCAAGTGGTTCCCGGACGAGCAGTTCATCGACCAGTTCAAGGGGCCGGTCATGTACCCGGACGAGGTGACGTCCCGCTGGAAGCTGCCGCCGTGGAACAGCAAGATTGCGCCGGTTGAGAAGACGGTGCGCAACCTGAGCCTCAACTTTGGACCGCAGCACCCAGCCGCCCACGGCGTACTGCGGCCGGTGCTCGAGCTGGACGGCGAGACGGTGATGCGGGCGGATCCGCACATCGGGCTGCTGCACCGCGGCACCGAGAAGCTGATCGAGTACAAGACGTACACGCAGGCGCTGCCGTACTTCGACCGGCTCGACTACGTGTCGATGATGTGCAACGAGCAGTGCT] [+] EMBL BM645297 [CCGGTGCGAACGAACTGTCTTCCCTGCATCGGTGCTCTACGACATACCTCCCCTGAGTGCTCATATCCCCCCTCCCACTCGTACGGTGTTATTGATTGTTTTAAAAGAAATCTCTGTTTTTCTCCTCCACCCCTATCCTTTTTGCTCCCCGCCATCTTTTAGCTCGACCGGAAAAGCAAAGAGAGCAACACCCCACCACCACCAGGGCCATAAGGGGGCAGGATGGCATTCAGCGTGCTGAACACGGTGGCGAAGCGCACCGCCGCGAACGTTTATGTAACCGGCGGTGGGCTGCTGAAAAATGTCGCCGCTTTATGTAACGGGCAGCAGCCGGCCCGGTCCGCCGGCAAGTGGTTTCCGGACGAGCAGTTCATCGACCAGTTCAAGGGGCCGGTCATGTACCCGGACGAGGTGACGTCCCGCTGGAAGCTGCCGCCGTGGAACAGCAAGATTGCGCCGGTTGAGAAGACGGTGCGCAACCTGAGCCTCAACTTTGGACCGCAGCACCCAGCCGCCCACGGCGTACTGCGGCTGGTGCTCGAGCTGGACGGCGAGACGGTGATGCGGGCGGATCCGCACATCGGGCTGCTGCACCGCGGCACCGAGAAGCTGATCGAGTACAAGACGTACACGCAGGCGCTGCCGTACTTCGACCGGCTCGACTACGTGTCGATGATGTGCAACGAGCAGTGCT] [+] EMBL BM638888 [ ccgCCTGAGTGCTCATATCCCCCCTCCCACTCGTACGGTGTTATTGATTGTTTTAAAAGAAATCTCTGTTTTTCTCCTCCACCCCTATCCTTTTTGCTCCCCGCCATCTTTTAGCTCGACCGGAAAAGCAAAGAGAGCAACACCCCACCACCACCAGGGCCATAAGGGGGCAGGATGGCATTCAGCGTGCTGAACACGGTGGCGAAGCGCACCGCCGCGAACGTTTATGTAACCGGCGGCGGGCTGCTGAAAAATGTCGCCGCTTTATGTAACGGGCAGCAGCCGGCCCGGTCCGCCGGCAAGTGGTTCCCGGACGAGCAGTTCATCGACCAGTTCAAGGGGCCGGTCATGTACCCGGACGAGGTGACGTCCCGCTGGAAGCTGCCGCCGTGGAACAGCAAGATTGCGCCGGTTGAGAAGACGGTGCGCAACCTGAGCCTCAACTTTGGACCGCAGCACCCAGCCGCCCACGGCGTACTGCGGTCGGTGCTCGAGCTGGACGGCGAGACGGTGATGCGGGCGGATCCGCACATCGGGCTGCTGCACCGCGGCACCGAGAAGCTGATCGAGTACAAGACGTACACGCAGGCGCTGCCGTACTTCGACCGGCTCGACT ] [+] EMBL BM641775 [ ccGCTCATATTCCCCCTCCCACTCGTACGGTGTTATTGATTGTTTTAAAAGAAATCTCTTTTTTTCTCCTCCACCCCTATCCTTTTTGCTCCCCGCCATCTTTTAGCTCGACCGGAAAAGCAAAGAGAGCAACACCCCACCACCACCAGGGCCATAAGGGGGCAGGATGGCATTCAGCGTGCTGAACACGGTGGCGAAGCGCACCGCCGCGAACGTTTATGTAACCGGCGGCGGGCTGCTGAAAAATGTCGCCGCTTTATGTAACGGGCAGCAGCCGGCCCGGTCCGCCGGCAAGTGGTTCCCGGACGAGCAGTTCATCGACCAGTTCAAGGGGCCGGTCATGTACCCGGACGAGGTGACGTCCCGTTGGAAGCTGCCGCCGTGGAACAGCAAGATTGCGCCGGTTGAGAAGACGGTGCGCAACCTGAGCCTCAACTTTGGACCGCAGCACCCAGCCGCCCACGGCGTACTGCGGCCGGTGCTCGAGCTGGACGGCGAGACGGTGATGC ] consensusID : consensus_8469#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 472 fasta sequence [CCGCCAAGCGTTCCTGCAGCAAACATCTTATCAACCCAGAGACCAACCA-ACCACCAAACAACCCAACAACAATGAACTTCTCCAAGATCTTCATCTTTGTCGTGCTGGCAGTGCTATTGCTCTGCAGTCAGACGGAAGCGGGACGGCTGAAGAAGCTGGGAAAGAAAATTGAGGGAGCCGGCAAGCGAGTGTTCAAGGCAGCAGAGAAGGCCCTACCGGTGGTGGCAGGCGTTAAGGCGCTCGGTTAGAGCGTCGGCAGGAGGATGGTTCTATTCGTGCTTAAGACGACGGCTCTGCTAACATGATATGGCAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGGGAGAGAGATGAAACAGCTTTAACAGATCTGTGGGCAGGGAGGGGAAAAGTGATAAAATTATAGCATGTAGTAAACAGATCTTGACTAGTTCGGCAAATAAATTTCACTTCTTATCTAACTGC] [+] EMBL BM632691 [CCGCAAAGCGTTCCTGCAGCAAACATCTTATCAACCCAGAGACCAACCACACCACCAAACAACCCAACAACAATGAACTTCTCCAAGATCTTCATCTTTGTCGTGCTGGCATTGCTATTGCTCTGCAGTCAGACGGAAGCGGGACGGCTGAAGAAGCTGGGAAAGAAAATTGAGGGAGCCGGCAAGCGAGTGTTCAAGGCAGCAGAGAAGGCCCTACCGGTGGTGGCAGGCGTTAAGGCGCTCGGTTAGAGCGTCGGCAGGAGGATGGTTCTATTCGTGCTTAAGACGACGGCTCTGCTAACATGATATGGCAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGGGAGAGAGATGAAACAGCTTTAACAGATCTGTGGGCAGGGAGGGGAAAAGTGATAAAATTATAGCATGTAGTATACAGATCTTGACTAGTTCGGCAAATAAAT ] [+] EMBL BM622152 [ CCGAGCGTTCCTGCAGCAAACATCTTATCAACCCAGAGACCAACCA ACCACCAAACAACCCAACAACAATGAACTTCTCCAAGATCTTCATCTTTGTCGTGCTGGCAGTGCTATTGCTCTGCAGTCAGACGGAAGCGGGACGGCTGAAGAAGCTGGGAAAGAAAATTGAGGGAGCCGGCAAGCGAGTGTTCAAGGCAGCAGAGAAGGCCCTACCGGTGGTGGCAGGCGTTAAGGCGCTCGGTTAGAGCGTCGGCAGGAGGATGGTTCTATTCGTGCTTAAGACGACGGCTCTGCTAACATGATATGGCAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGGGAGAGAGATGAAACAGCTTTAACAGATCTGTGGGCAGGGAGGGGAAAAGTGATAAAATTATAGCATGTAGTAAACAGATCTTGACT ] [+] EMBL BM583589 [ ccgGCGTTCCTGCAGCAAACATCTTATCAACCCAGAGACCAACCA ACCACCAAACAACCCAACAACAATGAACTTCTCCAAGATCTTCATCTTTGTCGTGCTGGCAGTGCTATTGCTCTGCAGTCAGACGGAAGCGGGACGGCTGAAGAAGCTGGGAAAGAAAATTGAGGGAGCCGGCAAGCGAGTGTTCAAGGCAGCAGAGAAGGCCCTACCGGTGGTGGCAGGCGTTAAGGCGCTCGGTTAGAGCGTCGGCAGGAGGATGGTTCTATTCGTGCTTAAGACGACGGCTCTGCTAACATGATATGGCAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGGGAGAGAGATGAAACAGCTTTAACAGATCTGTGGGCAGGGAGGGGAAAAGTGATAAAATTATAGCATGTAGTAAACAGATCTTGACTAGTTCGGCAAATAAATTTCACTTCTTATCTAACTGC] consensusID : consensus_8469#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence [TGATTAGATTANACAACACATACCTCATCCATTTCTCTATTGGCATGATATNCCCACGCGAAGGTGGCGAAGCAAGCGTTCATCTCCACCGTCAGCANGATGGGCAAGCAGGCAACTGTTACTCATGTCNNCCTCGGCGGTGCACGGATTCNGATACCTCNTAGCATGCCTAATCN] [+] EMBL BX624062 [TGATTAGATTANACAACACATACCTCATCCATTTCTCTATTGGCATGATATNCCCACGCGAAGGTGGCGAAGCAAGCGTTCATCTCCACCGTCAGCANGATGGGCAAGCAGGCAACTGTTACTCATGTCNNCCTCGGCGGTGCACGGATTCNGATACCTCNTAGCATGCCTAATCN] consensusID : consensus_8469#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 99 fasta sequence [ATTCAAAGGTCGAACAGACCTAAACTTTAAACTTCTACACCTAAAAATAACTCTTAATCCAACATCCGAGGGTCGGCGATCTTTTTTTATTCGAATATG] [+] EMBL AGA283090 [ATTCAAAGGTCGAACAGACCTAAACTTTAAACTTCTACACCTAAAAATAACTCTTAATCCAACATCCGAGGGTCGGCGATCTTTTTTTATTCGAATATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8469#2 -----------------------------------------------CCGCCAAGCGTTC 13 consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 ----CGCGGTCCGAAGAAACATTTGAAGCGTTTAAATGCTCCACGAGGATGGATGTTGGA 56 consensus_8469#3 ------------------------------------------------------------ consensus_8469#1 CCGGTGCGAACGAACTGTCTTCCCTGCATCGGTGCTCTACGACATACCTCCCCTGAGTGC 60 consensus_8469#2 CTGCAGCAAACATCTTATCAACCCAGAGACCAACCAACCACCAAACAACCCAACAACAAT 73 consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 CAAGACCGGCGGTACCTTCGCGCCACGTCCGTCCACCGGCCCACACAAGCTGCGCGAATC 116 consensus_8469#3 ------------------------------------------------------------ consensus_8469#1 TCATATCCCCCCTCCCACTCGTACGGTGTTATTGATTGTTTTAAAAGAAATCTCTGTTTT 120 consensus_8469#2 GAACTTCTCCAAGATCTTCATCTTTGTCGTGCTGGCAGTGCTATTGCTCTGCAGTCAGAC 133 consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 GCTGCCGCTGGTGATCTTCCTGCGTAACCGCCTGAAGTACGCACTGACCAACAGCGAGGT 176 consensus_8469#3 ------------------------------------------------------------ consensus_8469#1 TCTCCTCCACCCCTATCCTTTTTGCTCCCCGCCATCTTTTAGCTCGACCGGAAAAGCAAA 180 consensus_8469#2 GGAAGCGGGACGGCTGAAGAAGCTGGGAAAGAAAAT--TGAGGGAGCCGGCAAGCGAGTG 191 consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 GACGAAGATTGTGATGCAGCGTCACGTCAAGATCGA--CGGCAAGGTTCGCACCGATCCG 234 consensus_8469#3 ------------------------------------------------------------ consensus_8469#1 GAGAGCAACACCCCACCACCACCAGGGCCATAAGGGGGCAGGATGGCATTCAGCGTGCTG 240 consensus_8469#2 TTCAAGGCAGCAGAGAAGGCCCTACCGGTGGTG---GCAGGCGTTAAGGCGCTCGGTTAG 248 consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 AACTACCCGGCCGGATTCATGGGTACGTATTCC---AGTTTTAGCAGAAGAATGTTAGCT 291 consensus_8469#3 ------------------------------------------------------------ consensus_8469#1 AACACGGTGGCGAAGCGCACCGCCGCGAACGTTTATGTAACCGGCGGCGGGCTGCTGAAA 300 consensus_8469#2 AGCGTCGGCAGGAGGATGGTTCTATTCGTGCTTAAGACGACGGCTCTGCTAACATGATAT 308 consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 TAGCAACTGGAGAGGAAGAAACAGTGGGGTGTGGTGGTAATGGCGCTATCGAAGCGGGCT 351 consensus_8469#3 ------------------------------------------------------------ consensus_8469#1 AATGTCGCCGCTTTATGTAACGGGCAGCAGCCGGCCCGGTCCGCCGGCAAGTGGTTCCCG 360 consensus_8469#2 GGCAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGGGAGAGAGATGAAACAGCT 368 consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 AGCGAATGAAACAAGCGACGTCTGTCAAATTAAAGTTGCCAAGAGGAACATTTCTCCAT- 410 consensus_8469#3 --TGATTAGATTANACAACACATACCTCATCCATTTCTCTATTGGCATGATATNCCCACG 58 consensus_8469#1 GACGAGCAGTTCATCGACCAGTTCAAGGGGCCGGTCATGTACCCGGACGAGGTGACGTCC 420 consensus_8469#2 TTAACAGATCTGTGGGCAGGGAGGGGAAAAGTG--ATAAAATTATAG--CATGTAGTAAA 424 consensus_8469#4 -------ATTCAAAGGTCGAACAGACCTAAACT--TTAAACTTCTA---CACCTAA-AAA 47 consensus_8469#0 CGACGGTCGCTGAAGGCATTGCTAGTGAATACTAGATGGCCTCATCAGTAACATAACTGA 470 consensus_8469#3 CGAAGGTGGC-GAAGCAAGCGTTCATCTCCACC-GTCAGCANGATGGGCAA-GCAGGCAA 115 consensus_8469#1 CGCTGGAAGCTGCCGCCGTGGAACAGCAAGATTGCGCCGGTTGAGAAGACGGTGCGCAAC 480 * consensus_8469#2 CAGAT-CTTGACTAG---TTCGGCAAATAAATTTCACTTCTTATCTAACTGC-------- 472 consensus_8469#4 TAACT-CTTAATCCAACATCCGAGGGTCGGCGATCTTTTTTTATTCGAATATG------- 99 consensus_8469#0 CGGAGAGACAGTACGAATTGTGTGAATCAAGCAAATGTGTAGTTCCTAACGGGTTTGTTG 530 consensus_8469#3 CTGTTACTCATGTCNNCCTCGGCGGTGCACGGATTCNGATACCTCNTAGCATGCCTAATC 175 consensus_8469#1 CTGAGCCTCAACTTTGGACCGCAGCACCCAGCCGCCCACGGCGTACTGCGGCCGGTGCTC 540 * consensus_8469#2 ------------------------------------------------------------ consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 AGACAATGTTTAAGTGTATTAATGTTTGGAAACTGATTCCTAATGGAGAAAATTGAGGGA 590 consensus_8469#3 N----------------------------------------------------------- 176 consensus_8469#1 GAGCTGGACGGCGAGACGGTGATGCGGGCGGATCCGCACATCGGGCTGCTGCACCGCGGC 600 consensus_8469#2 ------------------------------------------------------------ consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 AAATCGGTCCTGTCAAAACACGGTAAACACACTGGGGTTTAGCTCAGTATGGGCAAAAGG 650 consensus_8469#3 ------------------------------------------------------------ consensus_8469#1 ACCGAGAAGCTGATCGAGTACAAGACGTACACGCAGGCGCTGCCGTACTTCGACCGGCTC 660 consensus_8469#2 ------------------------------------------------------------ consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 AAGCATTTCATATTACGCCCAATCGAAGCGGGTTTAGCGAAATAATAAGCATCGCCCGTC 710 consensus_8469#3 ------------------------------------------------------------ consensus_8469#1 GACTACGTGTCGATGATGTGCAACGAGCAGTGCT-------------------------- 694 consensus_8469#2 ------------------------------ consensus_8469#4 ------------------------------ consensus_8469#0 AAAAATGTGGCCAGAGTAAAGTTACTCCAT 740 consensus_8469#3 ------------------------------ consensus_8469#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||