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Anopheles gambiae
cluster # 8480 cluster # 8480       Sequences # 10       consensus # 8


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8480#0 length = 951 sequences # 2  
consensus_8480#1 length = 760 sequences # 1  
consensus_8480#2 length = 734 sequences # 1  
consensus_8480#3 length = 654 sequences # 1  
consensus_8480#4 length = 579 sequences # 1  
consensus_8480#5 length = 444 sequences # 1  
consensus_8480#6 length = 175 sequences # 1  
consensus_8480#7 length = 173 sequences # 2  

consensusID : consensus_8480#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 951
fasta sequence
                              [TTTTTTTTGGTTGGTTGTTGCTTTATGGTTTATTAATCATTCGCCACAACCGAATACGCCGCAATGCTCCGTAACTGAATATCCTTGCAGGGTAAGTAGTACATCCGGAACCACCGCCACCACCAACCAACCAACCAGGGAAAGGGGTTGCAAACAGGTTGGCGCGCTTACAAACGACGTCCACGACGACCACCCTTGCGGCGGGTAGAATCCGACGGGATCGGGGTCACATCCTCGATGCGGCCGATCTTCATCGACGAACGGGCGAGCGCACGGAGCGCCGCAAGCTCCACTTCTTGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAACTTTGCAACCATACTTCCCCCGGAACCCGATTTTGGTTTCCCGGAAGCTACTGAGAGCACCGAAGTAGGTAGCGTCTCCCAATTGCTAATTGGCATCGTTTACGGTTAGAACTAGGGCGGTATCTAATCGCCTTCGATCCTCTAACTTTCGTTCTTGATTAATGAAAGCATCCTTGGCAAACGCTTTCGCTTCTGTGGGTCCTACGACGGTCTACGAATTTCACCTCTCGCGCCGTAATACCAATGCCCCCGACTACTTCTGTTAATCATTACCTCTTGGTCTATTACAAACCAACGAAACCACTCAGACCGAGGTCATGTTCCATTATTCCATGCAAAATTATTCTCGGCCAACGCCGGCCCCGGAGGACCGGACGCTTTGAACTAGCCTGCTTTGAGCACTCTAATTTGTTCAAGGTAAACGAGAGTCCCCGGGCACCATGAAGCTGGGTCGAACAAGACCTTGACCGACGAGGTCGCGGCGACAAGTCCTGACCCGTCACGGAGTAGAACGCCCAGGTACACCATTGTGAGTCGCAGCCGCGAGCGCGTACACGGACGGTCCCAACCGAGAGGCCGGGCGTCTTGGTGCGGTTACCACCGGTAGCGCGCACTTTGA]

[+] EMBL AGA283583            [TTTTTTTTGGTTGGTTGTTGCTTTATGGTTTATTAATCATTCGCCACAACCGAATACGCCGCAATGCTCCGTAACTGAATATCCTTGCAGGGTAAGTAGTACATCCGGAACCACCGCCACCACCAACCAACCAACCAGGGAAAGGGGTTGCAAACAGGTTGGCGCGCTTACAAACGACGTCCACGACGACCACCCTTGCGGCGGGTAGAATCCGACGGGATCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CNS09IL8             [                     TTTATGGTTTATTAATCATTCGCCACAACCGAATACGCCGCAATGCTCCGTAACTGAATATCCTTGCAGGGTAAGTAGTACATCCGGAACCACCGCCACCACCAACCAACCAACCAGGGGAAGGGGTTGCAAACAGGTTGGCGCGCTTACAAACGACGTCCACGACGACCACCCTTGCGGCGGGTAGAATCCGACGGGATCGGGGTCACATCCTCGATGCGGCCGATCTTCATCGACGAACGGGCGAGCGCACGGAGCGCCGCAAGCTCCACTTCTTGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAACTTTGCAACCATACTTCCCCCGGAACCCGATTTTGGTTTCCCGGAAGCTACTGAGAGCACCGAAGTAGGTAGCGTCTCCCAATTGCTAATTGGCATCGTTTACGGTTAGAACTAGGGCGGTATCTAATCGCCTTCGATCCTCTAACTTTCGTTCTTGATTAATGAAAGCATCCTTGGCAAACGCTTTCGCTTCTGTGGGTCCTACGACGGTCTACGAATTTCACCTCTCGCGCCGTAATACCAATGCCCCCGACTACTTCTGTTAATCATTACCTCTTGGTCTATTACAAACCAACGAAACCACTCAGACCGAGGTCATGTTCCATTATTCCATGCAAAATTATTCTCGGCCAACGCCGGCCCCGGAGGACCGGACGCTTTGAACTAGCCTGCTTTGAGCACTCTAATTTGTTCAAGGTAAACGAGAGTCCCCGGGCACCATGAAGCTGGGTCGAACAAGACCTTGACCGACGAGGTCGCGGCGACAAGTCCTGACCCGTCACGGAGTAGAACGCCCAGGTACACCATTGTGAGTCGCAGCCGCGAGCGCGTACACGGACGGTCCCAACCGAGAGGCCGGGCGTCTTGGTGCGGTTACCACCGGTAGCGCGCACTTTGA]


>consensus_8480#0 TTTTTTTTGGTTGGTTGTTGCTTTATGGTTTATTAATCATTCGCCACAACCGAATACGCC GCAATGCTCCGTAACTGAATATCCTTGCAGGGTAAGTAGTACATCCGGAACCACCGCCAC CACCAACCAACCAACCAGGGAAAGGGGTTGCAAACAGGTTGGCGCGCTTACAAACGACGT CCACGACGACCACCCTTGCGGCGGGTAGAATCCGACGGGATCGGGGTCACATCCTCGATG CGGCCGATCTTCATCGACGAACGGGCGAGCGCACGGAGCGCCGCAAGCTCCACTTCTTGT GGTGCCCTTCCGTCAATTCCTTTAAGTTTCAACTTTGCAACCATACTTCCCCCGGAACCC GATTTTGGTTTCCCGGAAGCTACTGAGAGCACCGAAGTAGGTAGCGTCTCCCAATTGCTA ATTGGCATCGTTTACGGTTAGAACTAGGGCGGTATCTAATCGCCTTCGATCCTCTAACTT TCGTTCTTGATTAATGAAAGCATCCTTGGCAAACGCTTTCGCTTCTGTGGGTCCTACGAC GGTCTACGAATTTCACCTCTCGCGCCGTAATACCAATGCCCCCGACTACTTCTGTTAATC ATTACCTCTTGGTCTATTACAAACCAACGAAACCACTCAGACCGAGGTCATGTTCCATTA TTCCATGCAAAATTATTCTCGGCCAACGCCGGCCCCGGAGGACCGGACGCTTTGAACTAG CCTGCTTTGAGCACTCTAATTTGTTCAAGGTAAACGAGAGTCCCCGGGCACCATGAAGCT GGGTCGAACAAGACCTTGACCGACGAGGTCGCGGCGACAAGTCCTGACCCGTCACGGAGT AGAACGCCCAGGTACACCATTGTGAGTCGCAGCCGCGAGCGCGTACACGGACGGTCCCAA CCGAGAGGCCGGGCGTCTTGGTGCGGTTACCACCGGTAGCGCGCACTTTGA



consensusID : consensus_8480#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 760
fasta sequence
                              [GTATGTTTGGTGTACTATACTTCTGTTGTATCATCTTTCAATATCAACAAAATTCACCAGTCACAAAATGGTTTCAACACAAACAACTCATGTCATTGCTTCTCACATTCACACTTATTCCATATATTAATCAAAACATTTCACTCTTTTAAACACATTTCTACGTACGCTTCTGTATTACCGGATTTTCACGTTTGTCTGATTATTAAATCAGATCAAGCAAGGAAGATACTTCGTGACTATCACCAGCGTATAAATTCCCTGGAGGAGGAAAAGTACGATCTTGAGTATGTTGTTAAAAGGAAAGATATGGAGGTACATAAGTGCAGCAAACATTTATGAAAGCTATTTGAAAGGAAACATGTATTGCTATGTTGCATTTTTTCTTCTCTTCCTGCGATGACCGAACTCTCTCAACGTTCGATCATATCTTCTTTTCTTAATTTGCTCTCTTCTGCGCGCTATCTCTTCTTTCTTACTATAGTATATTTCATGATCTACGTTGCATTGTTTGTTAATCACTGATCTATTTATTTAATAATCTGCAGAATTTATTCTACCTTTTTTCACGTAATAACTGATTTTCCCTGTATATGTGTTTTTTTTCAATGGTGATAATACTTTTTGTTTATGTATGTTTTTTGGTGCAAAAAGTCTGAAGTTTCACTTAATTTCTACAATAATAATATTCATAAAATGTGCTTAACTTGGTAAATAATTACTCCATGCTGCTATCATTATAAGCAATATTTTTAGCTCC]

[+] EMBL BX621384             [GTATGTTTGGTGTACTATACTTCTGTTGTATCATCTTTCAATATCAACAAAATTCACCAGTCACAAAATGGTTTCAACACAAACAACTCATGTCATTGCTTCTCACATTCACACTTATTCCATATATTAATCAAAACATTTCACTCTTTTAAACACATTTCTACGTACGCTTCTGTATTACCGGATTTTCACGTTTGTCTGATTATTAAATCAGATCAAGCAAGGAAGATACTTCGTGACTATCACCAGCGTATAAATTCCCTGGAGGAGGAAAAGTACGATCTTGAGTATGTTGTTAAAAGGAAAGATATGGAGGTACATAAGTGCAGCAAACATTTATGAAAGCTATTTGAAAGGAAACATGTATTGCTATGTTGCATTTTTTCTTCTCTTCCTGCGATGACCGAACTCTCTCAACGTTCGATCATATCTTCTTTTCTTAATTTGCTCTCTTCTGCGCGCTATCTCTTCTTTCTTACTATAGTATATTTCATGATCTACGTTGCATTGTTTGTTAATCACTGATCTATTTATTTAATAATCTGCAGAATTTATTCTACCTTTTTTCACGTAATAACTGATTTTCCCTGTATATGTGTTTTTTTTCAATGGTGATAATACTTTTTGTTTATGTATGTTTTTTGGTGCAAAAAGTCTGAAGTTTCACTTAATTTCTACAATAATAATATTCATAAAATGTGCTTAACTTGGTAAATAATTACTCCATGCTGCTATCATTATAAGCAATATTTTTAGCTCC]


>consensus_8480#1 GTATGTTTGGTGTACTATACTTCTGTTGTATCATCTTTCAATATCAACAAAATTCACCAG TCACAAAATGGTTTCAACACAAACAACTCATGTCATTGCTTCTCACATTCACACTTATTC CATATATTAATCAAAACATTTCACTCTTTTAAACACATTTCTACGTACGCTTCTGTATTA CCGGATTTTCACGTTTGTCTGATTATTAAATCAGATCAAGCAAGGAAGATACTTCGTGAC TATCACCAGCGTATAAATTCCCTGGAGGAGGAAAAGTACGATCTTGAGTATGTTGTTAAA AGGAAAGATATGGAGGTACATAAGTGCAGCAAACATTTATGAAAGCTATTTGAAAGGAAA CATGTATTGCTATGTTGCATTTTTTCTTCTCTTCCTGCGATGACCGAACTCTCTCAACGT TCGATCATATCTTCTTTTCTTAATTTGCTCTCTTCTGCGCGCTATCTCTTCTTTCTTACT ATAGTATATTTCATGATCTACGTTGCATTGTTTGTTAATCACTGATCTATTTATTTAATA ATCTGCAGAATTTATTCTACCTTTTTTCACGTAATAACTGATTTTCCCTGTATATGTGTT TTTTTTCAATGGTGATAATACTTTTTGTTTATGTATGTTTTTTGGTGCAAAAAGTCTGAA GTTTCACTTAATTTCTACAATAATAATATTCATAAAATGTGCTTAACTTGGTAAATAATT ACTCCATGCTGCTATCATTATAAGCAATATTTTTAGCTCC



consensusID : consensus_8480#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 734
fasta sequence
                              [GCAGAATCCCCCGNCGGTTTGTAAGACACACTAATCAATTTACTAATCAATTGCGAATGAGATATCAAAAAGGAGAGCTCTAATGGACGGCGCGTGATCGTTTGTTACAAAAACCGATCCGTTAGAGATGACGGCGCGAAGGATCGATTGAAAAAAAAATGAAGCAAGAAGCTAGCGACATTAATTTAACAGCGCATTAATAAACCCTCCATTAAGAGCGGTCCCTAAAGTCCGAAGAGAACAAGGGATAACTCTTCTGGCATAGGAATGAAATGCAACATGAATGCAATATACTAAATCGATTGAGAGACAGCAACACATGGCANGTACTAACACATCGAAAAGGGACGAGAGAGAACGAGAGGCCGTAACAAGTGACGTGGGGCATAGATTGTCTTCCTCATGAAATTTTACCAAACTACACAACACANAGAAGACAACAGCCGTCTGTTTTACTATTAACTACTACAGCCTNNATNNTTCCATTATTCACCTAGTAGCCCTTCTAGTGCGCACAAACCACCGNAGCGTGAAGTGACAACTGGAAGGGAAAAACATGACTAGGAGACGAGAGAGAAAAAGCAGAGAAGACGAAACCTGNGTACTAAGAAACAAGCCAAGCCTAGCCAAACCGAACAGATCAGGTTTNCAGAAGATGATCCTCCATTTNTACGGTACNCGTTCCGCGCTNTCCTGGCTACGCACCAGAGNAGNGAACGATTAACGGGTNAGGN]

[+] EMBL AL693394             [GCAGAATCCCCCGNCGGTTTGTAAGACACACTAATCAATTTACTAATCAATTGCGAATGAGATATCAAAAAGGAGAGCTCTAATGGACGGCGCGTGATCGTTTGTTACAAAAACCGATCCGTTAGAGATGACGGCGCGAAGGATCGATTGAAAAAAAAATGAAGCAAGAAGCTAGCGACATTAATTTAACAGCGCATTAATAAACCCTCCATTAAGAGCGGTCCCTAAAGTCCGAAGAGAACAAGGGATAACTCTTCTGGCATAGGAATGAAATGCAACATGAATGCAATATACTAAATCGATTGAGAGACAGCAACACATGGCANGTACTAACACATCGAAAAGGGACGAGAGAGAACGAGAGGCCGTAACAAGTGACGTGGGGCATAGATTGTCTTCCTCATGAAATTTTACCAAACTACACAACACANAGAAGACAACAGCCGTCTGTTTTACTATTAACTACTACAGCCTNNATNNTTCCATTATTCACCTAGTAGCCCTTCTAGTGCGCACAAACCACCGNAGCGTGAAGTGACAACTGGAAGGGAAAAACATGACTAGGAGACGAGAGAGAAAAAGCAGAGAAGACGAAACCTGNGTACTAAGAAACAAGCCAAGCCTAGCCAAACCGAACAGATCAGGTTTNCAGAAGATGATCCTCCATTTNTACGGTACNCGTTCCGCGCTNTCCTGGCTACGCACCAGAGNAGNGAACGATTAACGGGTNAGGN]


>consensus_8480#2 GCAGAATCCCCCGNCGGTTTGTAAGACACACTAATCAATTTACTAATCAATTGCGAATGA GATATCAAAAAGGAGAGCTCTAATGGACGGCGCGTGATCGTTTGTTACAAAAACCGATCC GTTAGAGATGACGGCGCGAAGGATCGATTGAAAAAAAAATGAAGCAAGAAGCTAGCGACA TTAATTTAACAGCGCATTAATAAACCCTCCATTAAGAGCGGTCCCTAAAGTCCGAAGAGA ACAAGGGATAACTCTTCTGGCATAGGAATGAAATGCAACATGAATGCAATATACTAAATC GATTGAGAGACAGCAACACATGGCANGTACTAACACATCGAAAAGGGACGAGAGAGAACG AGAGGCCGTAACAAGTGACGTGGGGCATAGATTGTCTTCCTCATGAAATTTTACCAAACT ACACAACACANAGAAGACAACAGCCGTCTGTTTTACTATTAACTACTACAGCCTNNATNN TTCCATTATTCACCTAGTAGCCCTTCTAGTGCGCACAAACCACCGNAGCGTGAAGTGACA ACTGGAAGGGAAAAACATGACTAGGAGACGAGAGAGAAAAAGCAGAGAAGACGAAACCTG NGTACTAAGAAACAAGCCAAGCCTAGCCAAACCGAACAGATCAGGTTTNCAGAAGATGAT CCTCCATTTNTACGGTACNCGTTCCGCGCTNTCCTGGCTACGCACCAGAGNAGNGAACGA TTAACGGGTNAGGN



consensusID : consensus_8480#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence
                              [ACATGCAATTAAAAGTTATTGTATTTTTATATTTTTTTCTTGGCATTGGCTCCATTGATTTTGAGTTGGTCATCAAGCGCAATTTACAATCATGGTTGATTTTAGTTCCACCCAACTTTATACAATAAAGCGCTTTTAAATTTGTGAAAAATCAAAAGTGTTATAAAAAAACGCTGTCATTTATGGCTACATTCAGTTTAAAATGAATTTGCATTGTTATGAACAATAAAATAATTTTCCATTATCTCAAAGATTATCAACTAACTTATTTAAAAACTAAAACAATTCTTTTTGAATCCCAAAAATTGGAATTTATACTTTAAAAATAATTGTTTAATCATTAACACAACCAATAAATTTTTCATATCTTTATTACATTATACATTTAAAATAAACCCAACACAAGAGTTTCAATAACTTGAATAACATGACCCTATAACTATACAGTAACTGGTGTCTTGGTGTGATGCTCAATGCTTCAAATTTTAACGATTAGAAAAATAATGTAATTATGCTTTTCTGATGTTATCATCCTCACTGCTTTTCTTTAATTCTAATTTGAAAATAAAAGCATCATGCATGTTTTGCAAGTATATATAATTTACAGTTTTTTTATAATCTTTTTAGACACTCTATGCTTACCTTTCCGCTTAA]

[+] EMBL BX609526             [ACATGCAATTAAAAGTTATTGTATTTTTATATTTTTTTCTTGGCATTGGCTCCATTGATTTTGAGTTGGTCATCAAGCGCAATTTACAATCATGGTTGATTTTAGTTCCACCCAACTTTATACAATAAAGCGCTTTTAAATTTGTGAAAAATCAAAAGTGTTATAAAAAAACGCTGTCATTTATGGCTACATTCAGTTTAAAATGAATTTGCATTGTTATGAACAATAAAATAATTTTCCATTATCTCAAAGATTATCAACTAACTTATTTAAAAACTAAAACAATTCTTTTTGAATCCCAAAAATTGGAATTTATACTTTAAAAATAATTGTTTAATCATTAACACAACCAATAAATTTTTCATATCTTTATTACATTATACATTTAAAATAAACCCAACACAAGAGTTTCAATAACTTGAATAACATGACCCTATAACTATACAGTAACTGGTGTCTTGGTGTGATGCTCAATGCTTCAAATTTTAACGATTAGAAAAATAATGTAATTATGCTTTTCTGATGTTATCATCCTCACTGCTTTTCTTTAATTCTAATTTGAAAATAAAAGCATCATGCATGTTTTGCAAGTATATATAATTTACAGTTTTTTTATAATCTTTTTAGACACTCTATGCTTACCTTTCCGCTTAA]


>consensus_8480#3 ACATGCAATTAAAAGTTATTGTATTTTTATATTTTTTTCTTGGCATTGGCTCCATTGATT TTGAGTTGGTCATCAAGCGCAATTTACAATCATGGTTGATTTTAGTTCCACCCAACTTTA TACAATAAAGCGCTTTTAAATTTGTGAAAAATCAAAAGTGTTATAAAAAAACGCTGTCAT TTATGGCTACATTCAGTTTAAAATGAATTTGCATTGTTATGAACAATAAAATAATTTTCC ATTATCTCAAAGATTATCAACTAACTTATTTAAAAACTAAAACAATTCTTTTTGAATCCC AAAAATTGGAATTTATACTTTAAAAATAATTGTTTAATCATTAACACAACCAATAAATTT TTCATATCTTTATTACATTATACATTTAAAATAAACCCAACACAAGAGTTTCAATAACTT GAATAACATGACCCTATAACTATACAGTAACTGGTGTCTTGGTGTGATGCTCAATGCTTC AAATTTTAACGATTAGAAAAATAATGTAATTATGCTTTTCTGATGTTATCATCCTCACTG CTTTTCTTTAATTCTAATTTGAAAATAAAAGCATCATGCATGTTTTGCAAGTATATATAA TTTACAGTTTTTTTATAATCTTTTTAGACACTCTATGCTTACCTTTCCGCTTAA



consensusID : consensus_8480#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGACGGTTTCTGCTGAGTGTGCACCTGTGCAGTAGTCAATCAATCACGAAAATGTTTTCCTGCGCCCTGCTGGTGGGACTGCTAGTCCTGTACATGATCTGGGATGTGAACTACTTCCTTCGCTGTGTGGCCACCCTCGGGTACGGTATGCTGTTCCAGCGCAAACGGAAAGTGACGGACCAGACGGCCATTTACGGCCTCTGCACTACGCAGGACGTGGACATCTTTATCCGCCACATGAACAATGCGCGCTATCTGCGCGAGCTCGACTTTGCACGCTTCCACTTTTACGGGCTGACGGGCATCTATGGCAAGATTAAGGCGAAGCGGGGCGGCGCCGTCCAGGGTGCGTCGAGCGTGCGCTATCGCCGAACGATCCCCATCTTTACCGCGTACAAAATCACCACCAAGCTGGTCTGGTGGGACGAGAAGGCCATCTATCTGGAGCAACAGTTTGTGACGCTTGCCGATGGGTTCGTGCGTGCCGTCGCCATGTCCAAGCAGTGCATCACCAACGTGGACGTGCTAGAGCTGATGAAGGA]

[+] EMBL BM647976             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGACGGTTTCTGCTGAGTGTGCACCTGTGCAGTAGTCAATCAATCACGAAAATGTTTTCCTGCGCCCTGCTGGTGGGACTGCTAGTCCTGTACATGATCTGGGATGTGAACTACTTCCTTCGCTGTGTGGCCACCCTCGGGTACGGTATGCTGTTCCAGCGCAAACGGAAAGTGACGGACCAGACGGCCATTTACGGCCTCTGCACTACGCAGGACGTGGACATCTTTATCCGCCACATGAACAATGCGCGCTATCTGCGCGAGCTCGACTTTGCACGCTTCCACTTTTACGGGCTGACGGGCATCTATGGCAAGATTAAGGCGAAGCGGGGCGGCGCCGTCCAGGGTGCGTCGAGCGTGCGCTATCGCCGAACGATCCCCATCTTTACCGCGTACAAAATCACCACCAAGCTGGTCTGGTGGGACGAGAAGGCCATCTATCTGGAGCAACAGTTTGTGACGCTTGCCGATGGGTTCGTGCGTGCCGTCGCCATGTCCAAGCAGTGCATCACCAACGTGGACGTGCTAGAGCTGATGAAGGA]


>consensus_8480#4 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGACGGTTTCTGCTGAGTGTGCA CCTGTGCAGTAGTCAATCAATCACGAAAATGTTTTCCTGCGCCCTGCTGGTGGGACTGCT AGTCCTGTACATGATCTGGGATGTGAACTACTTCCTTCGCTGTGTGGCCACCCTCGGGTA CGGTATGCTGTTCCAGCGCAAACGGAAAGTGACGGACCAGACGGCCATTTACGGCCTCTG CACTACGCAGGACGTGGACATCTTTATCCGCCACATGAACAATGCGCGCTATCTGCGCGA GCTCGACTTTGCACGCTTCCACTTTTACGGGCTGACGGGCATCTATGGCAAGATTAAGGC GAAGCGGGGCGGCGCCGTCCAGGGTGCGTCGAGCGTGCGCTATCGCCGAACGATCCCCAT CTTTACCGCGTACAAAATCACCACCAAGCTGGTCTGGTGGGACGAGAAGGCCATCTATCT GGAGCAACAGTTTGTGACGCTTGCCGATGGGTTCGTGCGTGCCGTCGCCATGTCCAAGCA GTGCATCACCAACGTGGACGTGCTAGAGCTGATGAAGGA



consensusID : consensus_8480#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence
                              [CCGCGGACGCGTGGGGCGGTTTGAAGCGATATTGCCACTGTTCGAAGCGAAAACCGCCATCATCTTCAGCCCGGAAGTGCAAAAGATTAAACAGGTGCTGAGCGTGCTCAAGAAGACGCCCCAACTAGTACTGATGGGCGGTATTGTGGAAGGAAGGCTGCTGAGCAAAAATGAGTTCTTGGCTTACGCTACCATGCCCGACATTACGACGGTTCGTGCGCAGTTTGCCGCCGTGCTGGACAGTGTCGGTGGCAAGATCGTTGGAGATCTGCAATGTCACCAAAGCCAGTTGGTAAACCTGTTGGATGCGTACGCGAAGACCAATTCAAAACCCAGTGAAGCAAGTCCAGCTGGTGAAAAGGTGGACAGTTGAACGGTGAGGCATTTAGATTGAATAAGTAACTAGTTGAACGAGATGAAGTAAACGTCTTTATGAGTTAATTC]

[+] EMBL BM643922             [CCGCGGACGCGTGGGGCGGTTTGAAGCGATATTGCCACTGTTCGAAGCGAAAACCGCCATCATCTTCAGCCCGGAAGTGCAAAAGATTAAACAGGTGCTGAGCGTGCTCAAGAAGACGCCCCAACTAGTACTGATGGGCGGTATTGTGGAAGGAAGGCTGCTGAGCAAAAATGAGTTCTTGGCTTACGCTACCATGCCCGACATTACGACGGTTCGTGCGCAGTTTGCCGCCGTGCTGGACAGTGTCGGTGGCAAGATCGTTGGAGATCTGCAATGTCACCAAAGCCAGTTGGTAAACCTGTTGGATGCGTACGCGAAGACCAATTCAAAACCCAGTGAAGCAAGTCCAGCTGGTGAAAAGGTGGACAGTTGAACGGTGAGGCATTTAGATTGAATAAGTAACTAGTTGAACGAGATGAAGTAAACGTCTTTATGAGTTAATTC]


>consensus_8480#5 CCGCGGACGCGTGGGGCGGTTTGAAGCGATATTGCCACTGTTCGAAGCGAAAACCGCCAT CATCTTCAGCCCGGAAGTGCAAAAGATTAAACAGGTGCTGAGCGTGCTCAAGAAGACGCC CCAACTAGTACTGATGGGCGGTATTGTGGAAGGAAGGCTGCTGAGCAAAAATGAGTTCTT GGCTTACGCTACCATGCCCGACATTACGACGGTTCGTGCGCAGTTTGCCGCCGTGCTGGA CAGTGTCGGTGGCAAGATCGTTGGAGATCTGCAATGTCACCAAAGCCAGTTGGTAAACCT GTTGGATGCGTACGCGAAGACCAATTCAAAACCCAGTGAAGCAAGTCCAGCTGGTGAAAA GGTGGACAGTTGAACGGTGAGGCATTTAGATTGAATAAGTAACTAGTTGAACGAGATGAA GTAAACGTCTTTATGAGTTAATTC



consensusID : consensus_8480#6
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 175
fasta sequence
                              [GGTGCCGTGTCCGTAAGTCCCGCAGCATCATGGCGCCAATAGATGACCCGGAGGTGGCGGCATCGAAGAAGGAGATCACGGATATGACGGCCAAATAACAGGAGGAACAGAAAAAGGGAGCCGACTGGAAGCTGGCCGACAAGTGTGCCGATCTGGGCGACGTGCCGAAGGTGCG]

[+] EMBL BX615315             [GGTGCCGTGTCCGTAAGTCCCGCAGCATCATGGCGCCAATAGATGACCCGGAGGTGGCGGCATCGAAGAAGGAGATCACGGATATGACGGCCAAATAACAGGAGGAACAGAAAAAGGGAGCCGACTGGAAGCTGGCCGACAAGTGTGCCGATCTGGGCGACGTGCCGAAGGTGCG]


>consensus_8480#6 GGTGCCGTGTCCGTAAGTCCCGCAGCATCATGGCGCCAATAGATGACCCGGAGGTGGCGG CATCGAAGAAGGAGATCACGGATATGACGGCCAAATAACAGGAGGAACAGAAAAAGGGAG CCGACTGGAAGCTGGCCGACAAGTGTGCCGATCTGGGCGACGTGCCGAAGGTGCG



consensusID : consensus_8480#7
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 173
fasta sequence
                              [CCTTTTCCTTGCCGGCCGTGGCCCCTTGCTTGGTCGCCTGGCCTCGGTCGTCGCCCCGCCGCTCCTGTCTGGTCCCTCGGTGGTCGTGGTGCGCTGCGCGGGCCTTCCGCTGTCGGGCCCTTTCTTCCGCCCCCCGCTCCCGTTCTTGGCCTCCCTGCGGCCCCGCTGTCCCG]

[+] EMBL CNS08EGM             [CCTTTTCCTTGCCGGCCGTGGCCCCTTGCTTGGTCGCCTGGCCTCGGTCGTCGCCCCGCCGCTCCTGTCTGGTCCCTCGGTGGTCGTGGTGCGCTGCGCGGGCCTTCCGCTGTCGGGCCCTTTCTTCCGCCCCCCGCTCCCGTTCTTGGCCTCCCTGCGGCCCCGCTGTCCCG]
[+] EMBL CNS0963A             [ CTTTTCCTTGACGGCCGTGGCCCCTTGCTTGGTCGCCTGGCCTCGGTCGTCGCCCCGCCGCTCCTGTCTGGTCCCTCGGTGGTCGTGGTGCGCTGCGCGGGCCTTCCGCTGTCGGGCCCTTTCTTCCGCCCCCCGCTCCCGTT                             ]


>consensus_8480#7 CCTTTTCCTTGCCGGCCGTGGCCCCTTGCTTGGTCGCCTGGCCTCGGTCGTCGCCCCGCC GCTCCTGTCTGGTCCCTCGGTGGTCGTGGTGCGCTGCGCGGGCCTTCCGCTGTCGGGCCC TTTCTTCCGCCCCCCGCTCCCGTTCTTGGCCTCCCTGCGGCCCCGCTGTCCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8480#4      -------------------------CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCG 35
consensus_8480#7      ----------------------------------------------CCTTTTCCTTGCCG 14
consensus_8480#6      ---------------------------------------------------GGTGCCGTG 9
consensus_8480#2      -----------GCAGAATCCCCCGNCGGTTTGTAAGACACACTAATCAATTTACTAATCA 49
consensus_8480#0      TTTTTTTTGGTTGGTTGTTGCTTTATGGTTTATTAATCATTCGCCACAACCGAATACGCC 60
consensus_8480#1      ---------------------------GTATGTTTGGTGTACTATACTTCTGTTGTATCA 33
consensus_8480#5      -----------CCGCGGACGCGTGGGGCGGTTTGAAGCGATATTGCCACTGTTCGAAGCG 49
consensus_8480#3      ---ACATGCAATTAAAAGTTATTGTATTTTTATATTTTTTTCTTGGCATTGGCTCCATTG 57
                                                                                  

consensus_8480#4      TCCGACGGTTTCTGCTGAGTGTGCACC--TGTGCAGTAG-TCAATCAATCACGAAAA--- 89
consensus_8480#7      GCCGTGGCCCCTTGCTTGGT-CGCCTG--GCCTCGGTCG-TCGCCCCGCCGC-------- 62
consensus_8480#6      TCCGTAAGTCCC-GCAGCAT---CATG--GCGCCAATAGATGACCCGGAGGTGGCGG--- 60
consensus_8480#2      ATTGCGAATGAGATATCAAAAAGGAGA--GCTCTAATGGACGGCGCGTGATCGTTTG--- 104
consensus_8480#0      GCAATGCTCCGTAACTGAATATCCTTGCAGGGTAAGTAGTACATCCGGAACCACCGC--- 117
consensus_8480#1      TCTTTCAATATCAACAAAATTCACCAG-----TCACAAAATGGTTTCAACACAAACA--- 85
consensus_8480#5      AAAACCGCCATCATCTTCAG---CCCGGAAGTGCAAAAGATTAAACAGGTGCTGAGC--- 103
consensus_8480#3      ATTTTGAGT-TGGTCATCAAGCGCAATTTACAATCATGGTTGATTTTAGTTCCACCCAAC 116
                                                                                  

consensus_8480#4      -TGTTTTCCTGCGCCCTGCTGGTGGGACTGCTAGTCCTGTACATGATCTGGGATGT-GAA 147
consensus_8480#7      -TCCTGTCTGGTCCCTCGGTGGTCGTGGTGCG----CTGCGCGGGCCTTCCGCTGTCGGG 117
consensus_8480#6      -CATCGAAGAAGGAGATCACGGATATGACGGCCAAATAACAGGAGGAACAGAAAAAGGGA 119
consensus_8480#2      -TTACAAAAACCGATCCGTTAGAGATGACGGCGCGAAGGATCGATTGAAAAAAAAATGAA 163
consensus_8480#0      -CACCACCAACCAACCAACCAGGGAAAGGGGTTG--CAAACAGGTTGGCGCGCTTACAAA 174
consensus_8480#1      -ACTCATGTCATTGCTTCTCACAT-TCACACTTATTCCATATATTAATCAAAACATTTCA 143
consensus_8480#5      -GTGCTCAAGAAGACGCCCCAACTAGTACTGATGGGCGGTATTGTGGAAGGAAGGCTGCT 162
consensus_8480#3      TTTATACAATAAAGCGCTTTTAAATTTGTGAAAAATCAAAAGTGTTATAAAAAAACGCTG 176
                                                                                  

consensus_8480#4      CTACTTCCTTCGCTGTGTGGC-CACCCTCGGGTACGGTATGCTGTTCCAGCGCAAACGGA 206
consensus_8480#7      CCCTTTCTTCCGCCCCCCGCT-CCCGTTCTTGGCCTCCCTGCGGCCCCGCTGTCC-CG-- 173
consensus_8480#6      GCCGACTGGAAGCTGGCCGAC-AAGTGTGCCGATCTGGGCGACGTGCCGAAGGTG-CG-- 175
consensus_8480#2      GCAAGAAGCTAGCGACATTAA-TTTAACAGCGCATTAATAAACCCTCCATTAAGAGCGGT 222
consensus_8480#0      CGACGTCCACGACGACCACCC-TTGCGGCGGGTAGAATCCGACGGGATCGGGGTCACA-T 232
consensus_8480#1      CTCTTTTAAACACATTTCTACGTACGCTTCTGTATTACCGGATTTTCACGTTTGTCTGAT 203
consensus_8480#5      GAGCAAAAATGAGTTCTTGGCTTACGCTACCATGCCCGACATTACGACGGTTCGTGCGCA 222
consensus_8480#3      TCATTTATGGCTACATTCAGTTTAAAATGA-ATTTGCATTGTTATGAACAATAAAATAAT 235
                                                                                  

consensus_8480#4      AAGTGACGGACCAGACGGCCATTTACGGCCTCTGCACTACGCAGGACGTGGACATCTTTA 266
consensus_8480#7      ------------------------------------------------------------
consensus_8480#6      ------------------------------------------------------------
consensus_8480#2      CCCTAAAGTCCGAAGAGAACAAGGGATAACTCTTCTGGCATAGGAATGAAATGCAACATG 282
consensus_8480#0      CCTCGATGCGGCCGATCTTCATCGACGAACGGGCGAGCGCACGGAGCGCCGCAAGCTCCA 292
consensus_8480#1      TATTAAATCAGATCAAGCAAGGAAGATACTTCGTGACTATCACCAGCGTATAAATTCCCT 263
consensus_8480#5      GTTTGCCGC-CGTGCTGGACAGTGTCGGTGGCAAGATCGTTGGAGATCTGCAATGTCACC 281
consensus_8480#3      TTTCCATTATCTCAAAGATTATCAACTAACTTATTTAAAAACTAAA-ACAATTCTTTTTG 294
                                                                                  

consensus_8480#4      TCCGCCACATGAACAATGCGCGCTATCTGCGCGAGCTCGACTTTGCA----CGCTTCCAC 322
consensus_8480#7      ------------------------------------------------------------
consensus_8480#6      ------------------------------------------------------------
consensus_8480#2      AATGCAATATACTAAATCGATTGAGAGACAGCAACACATGGCANGTA----CTAACACAT 338
consensus_8480#0      CTTCTTGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAACTTTGCAACCATACTTCCCC 352
consensus_8480#1      GGAGGAGGAAAAGTACGATCTTGAGTATGTTGTTAAAAGGAAAGATATGGAGGTACATAA 323
consensus_8480#5      AAAGCCAGTTGGTAAACCTGTTGGATGCGTACGCGAAGACCAATTCAAAACCCAGTGAAG 341
consensus_8480#3      AATCCCAAAAATTGGAATTTATACTTTAAAAATAATTGTTTAATCATTAACACAACCAAT 354
                                                                                  

consensus_8480#4      TTTTACGGGCTGACGGGCATCTATGGCAAGATTAAGGCGAAGCGG--GGCGGCGCCGTCC 380
consensus_8480#7      ------------------------------------------------------------
consensus_8480#6      ------------------------------------------------------------
consensus_8480#2      CGAAAAGGGACGAGAGAGAACGAGAGGCCGTAACAAGTGACGTGG--GGCATAGATTGTC 396
consensus_8480#0      CGGAACCCGATTTTGGTTTCCCGGAAGCTACTGAGAGCACCGAAGTAGGTAGCGTCTCCC 412
consensus_8480#1      GTGCAGCAAACATTTATGAAAGCTATTTGAAAGGAAACATGTATTGCTATGTTGCATTTT 383
consensus_8480#5      CAAGTCCAGCTGGTGAAAA--GGTGGACAGTTGAACGGTGAGGCATTTAGATTGAATAAG 399
consensus_8480#3      AAATTTTTCATATCTTTATTACATTATACATTTAAAATAAACCCAACACAAGAGTTTCAA 414
                                                                                  

consensus_8480#4      AGGGTGCGTCGAGCGTGCGCTATCGCCGAACGATCCCCATCTTTACCGCGTACAAAATCA 440
consensus_8480#7      ------------------------------------------------------------
consensus_8480#6      ------------------------------------------------------------
consensus_8480#2      TTCCTCATGAAATTTTACCAAACTACACAACACANAGAAGACAACAGCCGTCTGTTTTAC 456
consensus_8480#0      AATTGCTAATTGGCATCGTTTACGGTTAGAACTAGGGCGGTATCTAATCGCCTTCGATCC 472
consensus_8480#1      TTCTTCTCTTCCTGCGATGACCGAACTCTCTCAACGTTCGATCATATCTTCTTTTCTTAA 443
consensus_8480#5      TAACTAGTTGAACGAGATGAAGTAAACGTCTTTATGAGTTAATTC--------------- 444
consensus_8480#3      TAACTTGAATAACATGACCCTATAACTATACAGTAACTGGTGTCTTGGTGTGATGCTCAA 474
                                                                                  

consensus_8480#4      CCACCAAGCTGGTCTGGTGGGACGAGAAGGCCATCTATCTGGAGCAACAGTTTGTGACGC 500
consensus_8480#7      ------------------------------------------------------------
consensus_8480#6      ------------------------------------------------------------
consensus_8480#2      TATTAACTACTACAGCCTNNATNNTTCCATTATTCACCTAGTAGCCCTTCTAGTGCGCAC 516
consensus_8480#0      TCTAACTTTCGTTCTTGATTAATGAAAGCATCCTTGGCAAACGCTTTCGCTTCTGTGGGT 532
consensus_8480#1      TTTGCTCTCTTCTGCGCGCTATCTCTTCTTTCTTACTATAGTATATTTCATGATCTACGT 503
consensus_8480#5      ------------------------------------------------------------
consensus_8480#3      TGCTTCAAATTTTAACGATTAGAAAAATAATGTAATTATGCTTTTCTGATGTTATCATCC 534
                                                                                  

consensus_8480#4      TTGCCGATGGGTTCGTGCGTGCCGTCGCCATGTCCAAGCAGTGCATCACCAACGTGGACG 560
consensus_8480#7      ------------------------------------------------------------
consensus_8480#6      ------------------------------------------------------------
consensus_8480#2      AAACCACCGNAGCGTGAAGTGACAACTGGAAGGGAAAAACATGACTAGGAGACGAGAGAG 576
consensus_8480#0      CCTACGACGGTCTACGAATTTCACCTCTCGCGCCGTAATACCAATGCCCCCGACTACTTC 592
consensus_8480#1      TGCATTGTTTGTTAATCACTGATCTATTTATTTAATAATC-TGCAGAATTTATTCTACCT 562
consensus_8480#5      ------------------------------------------------------------
consensus_8480#3      TCACTGCTTT--TCTTTAATTCTAATTTGAAAATAAAAGCATCATGCATGTTTTGCAAGT 592
                                                                                  

consensus_8480#4      TGCTAGAGCTGATGAAGGA----------------------------------------- 579
consensus_8480#7      ------------------------------------------------------------
consensus_8480#6      ------------------------------------------------------------
consensus_8480#2      AAAAAGCAGAGAAGACGAAACCTGNGTACTAAGAAACAAGCCAAGCCTAGCCAAACCGAA 636
consensus_8480#0      TGTTAATCATTACCTCTTGGTCTATTACAAACCAACGAAACCACTCAGACCGAGGTCATG 652
consensus_8480#1      TTTTTCACGTAATAACTGATTTTCCCTGTATATGTGTTTTTTTTCAATGGTGATAATACT 622
consensus_8480#5      ------------------------------------------------------------
consensus_8480#3      ATATATAATTTACAGTTTTTTTATAATCTTTTTAGACACTCTATGCTTACCTTTCCGCTT 652
                                                                                  

consensus_8480#4      ------------------------------------------------------------
consensus_8480#7      ------------------------------------------------------------
consensus_8480#6      ------------------------------------------------------------
consensus_8480#2      CAGATCAGGTTTNCAGAAGATGATCCTCCATTTNTACGGTACNCGTTCCGCGCTNTCCTG 696
consensus_8480#0      TTCCATTATTCCATGCAAAATTATTCTCGGCCAACGCCGGCCCCGGAGGACCGGACGCTT 712
consensus_8480#1      TTTTGTTTATGTATGTTTTTTGGTGCAAAAAGTCTGAAGTTTCACTTAATTTCTACAATA 682
consensus_8480#5      ------------------------------------------------------------
consensus_8480#3      AA---------------------------------------------------------- 654
                                                                                  

consensus_8480#4      ------------------------------------------------------------
consensus_8480#7      ------------------------------------------------------------
consensus_8480#6      ------------------------------------------------------------
consensus_8480#2      GCTACGCACCAGAGNAGNGAACGATTAACGGGTNAGGN---------------------- 734
consensus_8480#0      TGAACTAGCCTGCTTTGAGCACTCTAATTTGTTCAAGGTAAACGAGAGTCCCCGGGCACC 772
consensus_8480#1      ATAATATTCATAAAATGTGCTTAACTTGGTAAATAATTACTCCATGCTGCTATCATTATA 742
consensus_8480#5      ------------------------------------------------------------
consensus_8480#3      ------------------------------------------------------------
                                                                                  

consensus_8480#4      ------------------------------------------------------------
consensus_8480#7      ------------------------------------------------------------
consensus_8480#6      ------------------------------------------------------------
consensus_8480#2      ------------------------------------------------------------
consensus_8480#0      ATGAAGCTGGGTCGAACAAGACCTTGACCGACGAGGTCGCGGCGACAAGTCCTGACCCGT 832
consensus_8480#1      AGCAATATTTTTAGCTCC------------------------------------------ 760
consensus_8480#5      ------------------------------------------------------------
consensus_8480#3      ------------------------------------------------------------
                                                                                  

consensus_8480#4      ------------------------------------------------------------
consensus_8480#7      ------------------------------------------------------------
consensus_8480#6      ------------------------------------------------------------
consensus_8480#2      ------------------------------------------------------------
consensus_8480#0      CACGGAGTAGAACGCCCAGGTACACCATTGTGAGTCGCAGCCGCGAGCGCGTACACGGAC 892
consensus_8480#1      ------------------------------------------------------------
consensus_8480#5      ------------------------------------------------------------
consensus_8480#3      ------------------------------------------------------------
                                                                                  

consensus_8480#4      -----------------------------------------------------------
consensus_8480#7      -----------------------------------------------------------
consensus_8480#6      -----------------------------------------------------------
consensus_8480#2      -----------------------------------------------------------
consensus_8480#0      GGTCCCAACCGAGAGGCCGGGCGTCTTGGTGCGGTTACCACCGGTAGCGCGCACTTTGA 951
consensus_8480#1      -----------------------------------------------------------
consensus_8480#5      -----------------------------------------------------------
consensus_8480#3      -----------------------------------------------------------
                                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)