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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1430 fasta sequence
[TTCCTTTTGTTTTCGTTTATTTGTAGCATATTTTCGGTTCAATTTTGCCTTCGTTTTACAATTGTTTTCATAACACGTTTACGCCTGTTA-CCCCCTTTCACACTTTTTCTTTCTCACTTCTGTGTTTTTGTGTCTTCGCGTGTGAATGATTCGGTCAATTCTTGCAACAGAGTTAATAGATTACTGTTTTCTTCTTCCTATTTCTTCACTTAATTCCTGCCGTTTTGTTTGCTGTCACTATTGTTTGGTAATGGTTAGTTGCTAGTTGCTTAGCACGCATACAATAATGGCGCAGTGTGCTCTTTAAAATG-GGGGCCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATCGGAGTGGTTTTTCTGTACACAAAGAAGAGCGCGGTTTTTTACTGTAAGAGCTGTGTGCTTATTGTTGAGTCGAGTCTGATTTGTAGCGCGCGTATTTGCTGCTGCTGATGCTGAGGTGTGTTCCGATCGACTAAGACTTTTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCTAGCTTTGCTTTACTCCAATTGATTAATCGTTTTATGTGCGCGCGCGTGTGTGAATGTGTTCTTTTTTTGCTGGCTTTTTCCCCCGTTTAATTTGATGCCAGTTTGTTTTAACTTTGAAAAGATGCATTCTAATCTCTTCTTGCAAGTGCCACACTTAAAGGCTCACAACTCTTAACAGTTGCATTTGCGCTGAGCTTTGCTGCTTTTACTTCTCCCAACGCTGCTCTTCAAACACATTATCCCCTCTAAAAAAATCCCGATGTACAATCGCGCGTATCGGATTGCCGCCCTCCGCCTCCCGATCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACACGCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGGCAAAGACACTTTCTTTCGCTAGCGTGACGACAGCTGCGGGTGGCGAGTCGCAGCCGATGCGCCGAATTATACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATCCGG]
[+] EMBL CNS08XTE [TTCCTTTTGTTTTCGTTTATTTGTAGCATATTTTCGGTTCAATTTTGCCTTCGTTTTACAATTGTTTTCATAACACGTTTACGCCTGTTACCCCCCTTTCACACTTTTTCTTTCTCACTTCTGTGTTTTTGTGTCTTCGCGTGTGAATGATTCGGTCAATTCTTGCAACAGAGTTAATAGATTACTGTTTTCTTCTTCCTATTTCTTCACTTAATTCCTGCCGTTTTGTTTGCTGTCGCTATTGTTTGGTAATGGTTAGTTGCTAGTTGCTTAGCATGCATAC AATGGTGCA GTGCTCTTTAAAATGTGGGGCCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATCGGAGTGGTTTTTCTGTACACAAAGAAGAGCGCGGTTTTTTACTGTAAGAGCTGTGTGCTTATTGTTGAGTC ]
[+] EMBL BM591971 [ GTTTATTTGTAGCATATTTTCGGTTCGATTTTGCCTTCGTTTTACAATTGTTTTCCTAACACGTTTACGCCTGTTA CCCCCTTTCACACTTTTTCTTTTTCACTTCTGTGTTTTTGTGTCTTCTCGTGTGAATGATTCGGTCAATTCGTGCAACAGAGTTTATAGATTACTGGTTTCTTCTTCCGATTTCTTCACTTAATTCCTGCCGTTTTGTTTGCTGTCACTATTGTTTGGTAATGGTTAGTTACTAGTTGCTTAGCACGCATACAATAATGGCGCAGTGTGCTCTTTAAAATG GGGGCCTACAAATAAAGTGTACTTATCTATTGTT TTTTCCTCCTCCTTCTTGTTCAGTA ]
[+] EMBL BM597653 [ ccGCCGTTTTGTTTGCTGTCACTATTGTTTGGTAATGGTTAGTTGCTAGTTGCTTAGCACGCATACAATAATGGCGCAGTGTGCTCTTTAAAATG GGGGCCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATTGGAGTGGTTTTTCTGTACACAAAGAAGAGCGCGGTTTTTTACTGTAAGAGCTGTGTGCTTGTTGTTGAGTTGAGTCTGATTTGTAGCGCGCGTATTTGCTGCTGCTGATGCTGAGGTGTGTTCCGATCGACTAAGACTTTTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCTAGCTTTGCTTTACTCCAATTGATTAATCGTTTTATGTGCGCGCGCGTGTGTGAATGTGTTCTTTTTTTGCTGGCTTTTTCCCCCGTTTAATTTGATGCCAGTTTGTTTTAACTTTGAAAAGATGCATTCTAATCTCTTCTTGCAAGTGCCACACTTAAAGGCTCACAACTCTTAACAGTTGCATTTGCGCTGAGCTTTGCTGCTTTTACTTCTCCCAACGCTGCTCTT ]
[+] EMBL CNS08DBJ [ TCGCGTATTCATGCAACTAACATGCTTTTCTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCTAGCTTTGCTTTACTCCAATTGATTAATCGTTTTATGTGCGCGCGCGTGTGTGAATGTGTCCTTTTTTTGCTGGC TTTTCCCCCGTTTAATTTGATG ]
[-] EMBL CNS08XTD [ TTAACAGTTGCATTTGCGCTGAGCTTTGCTGCTTTTACTTCTCCCAACGCTGCTACTCAAACACATTATCCCCTCTAAAAAAATCCCGATGTACAATCGCGCGTATCGGATTGCCGCCCTCCGCCTCCCGATCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACACGCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGGCAAAGACACTTTCTTTCGCTAGCGTGACGACAGCTGCGGGTGGCGAGTCGCAGCCGATGCGCCGAATTATACGTAT ]
[-] EMBL CNS08DBI [ tcTCCCGATGTACAATCGCGCGTATCGGATTGCCGCCCTCCGCCTCCCGATCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGGTCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCC CTT ]
[-] EMBL BM607290 [ GTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACACGCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGGCAAAGACACTTTCTTTCGCTAGCGTGACGACAGCTGCGGGTGGCGAGTCGCAGCCGATGCGCCGAATTATACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATCCGG]
consensusID : consensus_8481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 596 fasta sequence
[CTGCACCTTGATCACCTCCGCCGGCACGTGCACGATCGCCTCCACGATCGTGTCCCGGATCATGGCCCGGTCCTGCTCGTGGATCGCGAACGGGATCGGATTGCCGCCCTCCGCCTCCCGGTCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACACGCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGGCAAAGACACTTTCTTTCGCTAGCGTGACGACAGCTGCGGGTGGCGAGTCGCCCCCCATGCGCCGAATTATACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATCACCGCAAATTGCACGG]
[-] EMBL BM623997 [CTGCACCTTGATCACCTCCGCCGGCACGTGCACGATCGCCTCCACGATCGTGTCCCGGATCATGGCCCGGTCCTGCTCGTGGATCGCGAACGGGATCGGATTGCCGCCCTCCGCCTCCCGGTCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACACGCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGGCAAAGACACTTTCTTTCGCTAGCGTGACGACAGCTGCGGGTGGCGAGTCGCCCCCCATGCGCCGAATTATACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATCACCGCAAATTGCACGG]
[-] EMBL AGA284760 [ CTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAACCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATTGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTTTCCATGTTGTTCGGGGGGGATCCTACACGGGAGGGATGC ]
consensusID : consensus_8481#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence
[CAGTGTGCTCTTTAAAATGGGGACCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATCGGAGTGGGTTTTCTGTACACAAAGAAGAGCGCGGTTTTACTGTAAGAGCTGTGTGCTTGTTGTTGAGTTGAGTCTGGTTTGTGGCGCTCGTGTTTGCTGCTGCTGCTGAGGTGTGTTCCGATCGACTAAGACTTTTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTCGG]
[-] EMBL BM615468 [CAGTGTGCTCTTTAAAATGGGGACCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATCGGAGTGGGTTTTCTGTACACAAAGAAGAGCGCGGTTTTACTGTAAGAGCTGTGTGCTTGTTGTTGAGTTGAGTCTGGTTTGTGGCGCTCGTGTTTGCTGCTGCTGCTGAGGTGTGTTCCGATCGACTAAGACTTTTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8481#0 TTCCTTTTGTTTTCGTTTATTTGTAGCATATTTTCGGTTCAATTTTGCCTTCGTTTTACA 60
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 ATTGTTTTCATAACACGTTTACGCCTGTTACCCCCTTTCACACTTTTTCTTTCTCACTTC 120
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 TGTGTTTTTGTGTCTTCGCGTGTGAATGATTCGGTCAATTCTTGCAACAGAGTTAATAGA 180
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 TTACTGTTTTCTTCTTCCTATTTCTTCACTTAATTCCTGCCGTTTTGTTTGCTGTCACTA 240
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 TTGTTTGGTAATGGTTAGTTGCTAGTTGCTTAGCACGCATACAATAATGGCGCAGTGTGC 300
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 TCTTTAAAATGGGGGCCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCC 360
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 TTCTTGTTCAGTAAAGGAAATCGGAGTGGTTTTTCTGTACACAAAGAAGAGCGCGGTTTT 420
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 TTACTGTAAGAGCTGTGTGCTTATTGTTGAGTCGAGTCTGATTTGTAGCGCGCGTATTTG 480
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 CTGCTGCTGATGCTGAGGTGTGTTCCGATCGACTAAGACTTTTGCCCGTTTTCCTTAAGC 540
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 ATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCT 600
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 TTTTTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTG 660
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 TGTGCTAGCTTTGCTTTACTCCAATTGATTAATCGTTTTATGTGCGCGCGCGTGTGTGAA 720
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 TGTGTTCTTTTTTTGCTGGCTTTTTCCCCCGTTTAATTTGATGCCAGTTTGTTTTAACTT 780
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 TGAAAAGATGCATTCTAATCTCTTCTTGCAAGTGCCACACTTAAAGGCTCACAACTCTTA 840
consensus_8481#1 ------------------------------------------------------------
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 ACAGTTGCATTTGCGCTGAGCTTTGCTGCTTTTACTTCTCCCAACGCTGCTCTTCAAACA 900
consensus_8481#1 ----CTGCACCT----TGATCACCTCCGCCGGCACGTGCACGATCGC--CTCCACGATCG 50
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 CATTATCCCCTCTAAAAAAATCCCGATGTACAATCGCGCGT---ATCGGATTGCCGCCCT 957
consensus_8481#1 TGTCCCGGATCATGGCCCGGTCCTGCTCGTGGATCGCGAACGGGATCGGATTGCCGCCCT 110
consensus_8481#2 ------------------------------------------------------------
consensus_8481#0 CCGCCTCCCGATCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCA 1017
consensus_8481#1 CCGCCTCCCGGTCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCA 170
consensus_8481#2 -------------CAGTGTGCTCTTTAAAATGGGGACCTACAAATAAAGTGTACTTATCT 47
* * *** * ** ** ** ** ** * * ** *
consensus_8481#0 GCCGGACCGGAATCTCCAGCTCATTCT-GCATGATCACCTGCATCAGGGTGGGCAGGAAG 1076
consensus_8481#1 GCCGGACCGGAATCTCCAGCTCATTCT-GCATGATCACCTGCATCAGGGTGGGCAGGAAG 229
consensus_8481#2 ATTGTTTTGT--TTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATCGGAGTGGGTTTTCTG 105
* * * *** *** **** * * * *** * ***** *
consensus_8481#0 CCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCG 1136
consensus_8481#1 CCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCG 289
consensus_8481#2 TACACAAAGAAGAGCGC--GGTTT---TACTGTAAGAGCTGTGTGCTTGTTGTTGAGTTG 160
* * * * * * ** * ** * *** * ** ** ** *
consensus_8481#0 ATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGT-TGTTCGGGGCGGATAT 1195
consensus_8481#1 ATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGT-TGTTCGGGGCGGATAT 348
consensus_8481#2 AGTCTGGTTTGTGGC-GCTCGTGTTTGCTGCTGCTGCTGAGGTGTGTTCCGATCGACTAA 219
* *** * ** ***** * * ** * * * ** ***** * ** **
consensus_8481#0 TACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACAC 1255
consensus_8481#1 TACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACAC 408
consensus_8481#2 GACTTTTGC------CCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATA-AC 272
** * * * * * * * * * * ** * * **
consensus_8481#0 GCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGG-CAAAGACACTT 1314
consensus_8481#1 GCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGG-CAAAGACACTT 467
consensus_8481#2 TTCAATCGCGTATTCATGCAA-CTAACATGCTTTTTTGTTTCCTTTAAATGAACGCATCT 331
* ** * ** ** * ** * * * * ** ** *
consensus_8481#0 TCTTTCGCTAGCGTG-ACGACAGCTGCGGGTGGCGAGTCGCAGCCGATGCGCCGAATTAT 1373
consensus_8481#1 TCTTTCGCTAGCGTG-ACGACAGCTGCGGGTGGCGAGTCGCCCCCCATGCGCCGAATTAT 526
consensus_8481#2 GCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCCCGTTTTCCTTAAGC---ATTGA 388
* * ** * ** * * ** ***** ** * * ** ***
consensus_8481#0 ACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATC-CGG-- 1430
consensus_8481#1 ACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATCACCGCA 586
consensus_8481#2 AATAATTTTCATA----TAATAGATAACTTC-AATCGC-GTATTCATGCAACTA-ACATG 441
* **** * *** * ** * * *** ** * * *** ** *
consensus_8481#0 ----------
consensus_8481#1 AATTGCACGG 596
consensus_8481#2 CTTTTTTCGG 451
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||