These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 760 fasta sequence [CCCACGAGGTATAAAAATCTTTCTCGTGCAGTAAAACTGGCGTTGAAATGAATGTTTAAGGTGATTTAAACATAAATATCTA-GTAAATTAGCCTACACTTAAAAAGGGCAAATGATCGTGCGTTAGGTATCCGTAATAGTGTAGTGGAAGCATTGAAATTGCTAGACTAAAACGTGGTGTACCAGCAGAGAAGAAAGCAAACCTTTTCCCCAATATTGTGCCACGATGCCGAAAAAGATGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCGCCAACGAAAAGGCTGC-CAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGCTGGCGAAGAAAAAGAAGCAAAAGGAGGAAGAAGAACGGCGCAAGGCGGAAGCGGCCCGCAAGAAGGCAGAAACCAAAGCCCTGCTCGAGCAAGAGATGAACTCGATCAAGACGACGGCAAAGGTTCCGGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGCGAGCCATCGAAGCGTCCACGGCCGTACCGTCGAAGCCGAAAGTGGTGGAGAAGGAAGTACCGCTGGAGGAAAATCTGAACCGTGTGATGGCGGACACGGAAGTCGCACAAACGATCGATCAGGCGATTGCGGTTCTCAGCGTCGGCGACCCGTCTGCCGATCGGCATCCGGATAAGCGCATGAAGGCAGCATACAAGGCATACGAAGAGGAGGAATTGAAGC] [+] EMBL AL692418 [CCCACGAGGTATAAAAATCTTTCTCGTGCAGTAAAACTGGCGTTGAAATGAATGTTTAAGGTGATTTAAACATAAATATCTAGGTAAATTAGCGTACACTTAAAAAGGGCAAATGATTGTGCGTGAGGTATCTGTAACAGTGTAGTGCAAGCATTGAAATTGCTAGACTAAAACGTGGTGTACCAGCAGAGAAGAAAGCAAACCTTTTCCCCAATATTGTGCCACGATGCCGAAAAAGATGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCGCCAACGAAAAGGCTGCGCAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGCTGGCGAAGAAAAAGAAGCAAAAGGAGGAAGAAGAACGGCGCAAGGCGTAAGCGGC ] [+] EMBL BM632748 [ ccgcATAAAAATCTTTCTCGTGCAGTAAAACTGGCGTTGAAATGAATGTTTAAGGTGATTTAAACATAAATATCTA ATAAATTAGCCTACACTTAAAAAGGGCAAATGATCGTGCGTTAGGTATCCGTAATAGTGTAGTGGAAGCATTGAAATTGCTAGACTAAAACGTGGTGTACCAGCAGAGAAGAAAGCAAACCTTTTTCCCAATATTGTGCCACGATGCCGAAAAAGATGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCGCCAACGAAAAGGCTGC CAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGCTGGCGAAGAAAAAGAAGCAAAAGGAGGAAGAAGAACGACGCAAGGCGGAAGCGGCCCGCAAGAAGGCAGAAACCAAAGCCCTGCTCGAGCAAGAGATGAACTCGATCAAGACGACGGCAAAGGTTCCGGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGCGAGCCATCGAAGCGTCCACGGCCGTACCGTCGAAGCCGAAAGTGGTGGAGAAGGAAGTACCGCTGGAGGAAAATCTGAACCGTGTGATGGCGGACACG ] [+] EMBL BM590843 [ ccgGTAAAACTGGCGTTGAAATGAATGTTTAAGGTGATTTAAACATAAATATCTA ATAAATTAGCCTACACTTAAAAAGGGCAAATGATCGTGCGTTAGGTATCCGTAATAGTGTAGTGGAAGCATTGAAATTGCTAGACTAAAACGTGGTGTACCAGCAGAGAAGAAAGCAAACCTTTTTCCCAATATTGTGCCACGATGCCGAAAAAGATGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCGCCAACGAAAAGGCTGC CAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGCTGGCGAAGAAAAAGAAGCAAAAGGAGGAAGAAGAACGACGCAAGGCGGAAGCGGCCCGCAAGAAGGCAGAAACCAAAGCCCTGCTCGAGCAAGAGATGAACTCGATCAAGACGACGGCAAAGGTTCCGGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGCGAGCCATCGAAGCGTCCACGGCCGTACCGTCGAAGCCGAAAGTGGTGGAGAAGGAAGTACCGCTGGAGGAAAATCTG ACCGTGTGATGGCGGA ] [+] EMBL BX607708 [ TTAAACATAAATATCTA GTAAATTAGCGTACACTTAAAAAGGGCAAATGATTGTGCGTGAGGTATCTGTAACAGTGTAGTGCAAGCATTGAAATTGCTAGACTAAAACGTGGTGTACCAGCAGAGAAGAAAGCAAACCTTTTCCCCAATATTGTGCCACGATGCCGAAAAAGATGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCGCCAACGAAAAGGCTGC CAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGCTGGCGAAGAAAAAGAAGCAAAAGGAGGAAGAAGAACGGCGCAAGGCGGAAGCGGCCCGCAAGAAGGCAGAAACCAAAGCCCTGCTCGAGCAAGAGATGAACTCGATCAAGACGACGGCAAAGGTTCCGGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGCGAGCCATCGAAGCGTCCGCGGCCGTACCGTCGAAGCCGAAAGTGGTGGAGAAGGAAGTACCGCTGGAGGAGAATCTGAACCGTGTGATGGCGGACACGGAAGTCGCACAAACGATCGATCAGGCGATTGCGGTTCTCAGCGTCGGCGACCCGTCTGCCGATCGGCATCCGGATAAGCGCATGAAGGCAGCATACAAGGCATACGAAGAGGAGGAATTGAAGC] [+] EMBL BX619226 [ AATTAGTCTACACNTTAAA GGCAAATGATCGTGCGTTAGGTATCCGTAATAGTGTAGTGGAAGCATTGAAATTGCTAGACTAAAACGTGGTGTACCAGCAGAGAAGAAAGTAAACCTTTTTCCCAATATTGTGCCACGATGCCGAAAAAGATGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCGCCAACGAAAAGGCTGC CAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGCTGGCGAAGAAAAAGAAGCAGAAGGAGGAAGAAGAACGGCGCAAGGCGGANGCGG ] [+] EMBL BX606394 [ TGGTGTACCAGCAGAGAAGAAAGCAAACCTTTTCCCCAATATTGTGCCACGATGCCGAAAAAGATGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCGCCAACGAAAAGGCTGC CAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGCTGGCGAAGAAAAAGAAGCAAAAGGAGGAAGAAGAACGGCGCAAGGCGGAAGCGGCCCGCAAGAAGGCAGAAACCAAAGCCCTGCTCGAGCAAGAGATGAACTCGATCAAGACGACGGCAAAGGTTCCGGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGCGAGCCATCGAAGCGTCCGCGGCCGTA ] [+] EMBL BX618856 [ GTGCCACGATGCCGAAAAAGATGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCGCCAACGAAAAGGCTGC CAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGCTGGCGAAGAAAAAGAAGCAGAAGGAGGAAGAAGAACGGCGCAAGGCGGAAGCGGCCCGCAAGAAGGCAGAAACCAAAGCCCTGCTCGAGCAAGAGATGAACTCGATCAAGACGACGGCAAAGGTTCCTGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGCGAGCCATCGAAGCGTCCACGGCCGTACCGTCGAAGCCGAAAGTGGTGGAGAAGGAAGTACCGCTGGAGGAAAATCTGAACCGTGTGCTGGCGGACACGGAAGTCGCACAAACGATCGATCAG ] consensusID : consensus_8498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 694 fasta sequence [CCGCCGTAATTCATAAAAATCTTTCTCGTGCCGTAAAACTGGCGTTGAAATGAATGTTTAAGGTGATTTAAACATAAATATCTAGAAAATTAGCGTACACTTAAAAAGAGCAAATGATTGTGCGTGAGGTATCTGTAACAGTGTAGTGCAAGCATTGAAATTGCTAGACTAAAACGTGGTGTACCAGCAGAGAAGAAAGCAAACCTTTTCCCCAATATTGTGCCACGATGCCGAAAAAGATGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCGCCAACGAAAAGGCTGCCAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGCTGGCGAAGAAAAAGAAGCAAAAGGAGGAAGAAGAACGGCGCAAGGCGGAAGCGGCCCGCAAGAAGGCAGAAACCAAAGCCCTGCTCGAGCAAGAGATGAACTCGATAAAGACGACGGCAAAGGTTCCGGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGCGAGCCATCGAAGCTTCCACGGCCGTACCGTCGAAGCCGAAAGTGGT-GGAGAAGGAAGTACCGCTGGAGGAAAATCTGAACCGTGTGATGGCGGGACACGGAAGTCGCACAAACGATCGATCA-GGCGATTGCGGTTCTCAGCGTCGGCGACCCCG] [+] EMBL BM607279 [CCGCCGTAATTCATAAAAATCTTTCTCGTGCCGTAAAACTGGCGTTGAAATGAATGTTTAAGGTGATTTAAACATAAATATCTAGAAAATTAGCGTACACTTAAAAAGAGCAAATGATTGTGCGTGAGGTATCTGTAACAGTGTAGTGCAAGCATTGAAATTGCTAGACTAAAACGTGGTGTACCAGCAGAGAAGAAAGCAAACCTTTTCCCCAATATTGTGCCACGATGCCGAAAAAGATGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCGCCAACGAAAAGGCTGCCAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGCTGGCGAAGAAAAAGAAGCAAAAGGAGGAAGAAGAACGGCGCAAGGCGGAAGCGGCCCGCAAGAAGGCAGAAACCAAAGCCCTGCTCGAGCAAGAGATGAACTCGATAAAGACGACGGCAAAGGTTCCGGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGCGAGCCATCGAAGCTTCCACGGCCGTACCGTCGAAGCCGAAAGTGGTGGGAGAAGGAAGTACCGCTGGAGGAAAATCTGAACCGTGTGATGGCGGGACACGGAAGTCGCACAAACGATCGATCAGGGCGATTGCGGTTCTCAGCGTCGGCGACCC ] [+] EMBL BM621375 [CCG CGTAATTCATAAAAATCTTTCTCGTGCCGTAAAACTGGCGTTGAAATGAATGTTTAAGGTGATTTAAACATAAATATCTAGAAAATTAGCGTACACTTAAAAAGAGCAAATGATTGTGCGTGAGGTATCTGTAACAGTGTAGTGCAAGCATTGAAATTGCTAGACTAAAACGTGGTGTACCAGCAGAGAAGAAAGCAAACCTTTTCCCCAATATTGTGCCACGATGCCGAAAAAGATGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCGCCAACGAAAAGGCTGCCAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGCTGGCGAAGAAAAAGAAGCAAAAGGAGGAAGAAGAACGGCGCAAGGCGGAAGCGGCCCGCAAGAAGGCAGAAACCAAAGCCCTGCTCGAGCAAGAGATGAACTCGATAAAGACGACGGCAAAGGTTCCGGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGCGAGCCATCGAAGCTTCCACGGCCGTACCGTCGAAGCCGAAAGTGGT GGAGAAGGAAGTACCGCTGGAGGAAAATCTGAACCGTGTGATGGCGGGACACGGAAGTCGCACAAACGATCGATCA GGCGATTGCGGTTCTCAGCGTCGGCGACCCCG] [+] EMBL BM592500 [ ccgGACGACGGCAAAGGTTCCGGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGCGAGCCATCGAAGCTTCCACGGCCGTACCGTCGAAGCCGAAAGTGGT GGAGAAGGAAGTACCGCTGGAGGAAAATCTGAACCGTGTGATGGC GGACACGGAAGTCGCACAAACGATCGATCA GG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8498#0 --CCCACGAGGTATAAAAATCTTTCTCGTGCAGTAAAACTGGCGTTGAAATGAATGTTTA 58 consensus_8498#1 CCGCCGTAATTCATAAAAATCTTTCTCGTGCCGTAAAACTGGCGTTGAAATGAATGTTTA 60 ** * ******************* **************************** consensus_8498#0 AGGTGATTTAAACATAAATATCTAGTAAATTAGCCTACACTTAAAAAGGGCAAATGATCG 118 consensus_8498#1 AGGTGATTTAAACATAAATATCTAGAAAATTAGCGTACACTTAAAAAGAGCAAATGATTG 120 ************************* ******** ************* ********* * consensus_8498#0 TGCGTTAGGTATCCGTAATAGTGTAGTGGAAGCATTGAAATTGCTAGACTAAAACGTGGT 178 consensus_8498#1 TGCGTGAGGTATCTGTAACAGTGTAGTGCAAGCATTGAAATTGCTAGACTAAAACGTGGT 180 ***** ******* **** ********* ******************************* consensus_8498#0 GTACCAGCAGAGAAGAAAGCAAACCTTTTCCCCAATATTGTGCCACGATGCCGAAAAAGA 238 consensus_8498#1 GTACCAGCAGAGAAGAAAGCAAACCTTTTCCCCAATATTGTGCCACGATGCCGAAAAAGA 240 ************************************************************ consensus_8498#0 TGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCG 298 consensus_8498#1 TGGGAATAAACCCGAAGGCCGCCGAGGCCCGAGAACGCAAGGCTGAGGCTAAAAAATCCG 300 ************************************************************ consensus_8498#0 CCAACGAAAAGGCTGCCAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGC 358 consensus_8498#1 CCAACGAAAAGGCTGCCAAGGCAGCGGAAGATGCTTACTGGGCGGACGACGACAAACAGC 360 ************************************************************ consensus_8498#0 TGGCGAAGAAAAAGAAGCAAAAGGAGGAAGAAGAACGGCGCAAGGCGGAAGCGGCCCGCA 418 consensus_8498#1 TGGCGAAGAAAAAGAAGCAAAAGGAGGAAGAAGAACGGCGCAAGGCGGAAGCGGCCCGCA 420 ************************************************************ consensus_8498#0 AGAAGGCAGAAACCAAAGCCCTGCTCGAGCAAGAGATGAACTCGATCAAGACGACGGCAA 478 consensus_8498#1 AGAAGGCAGAAACCAAAGCCCTGCTCGAGCAAGAGATGAACTCGATAAAGACGACGGCAA 480 ********************************************** ************* consensus_8498#0 AGGTTCCGGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGC 538 consensus_8498#1 AGGTTCCGGCACCGAAGATAACCCGCTCGCAAATCGAGGCCGATCTAGAGAAACGCCAGC 540 ************************************************************ consensus_8498#0 GAGCCATCGAAGCGTCCACGGCCGTACCGTCGAAGCCGAAAGTGGTGGAGAAGGAAGTAC 598 consensus_8498#1 GAGCCATCGAAGCTTCCACGGCCGTACCGTCGAAGCCGAAAGTGGTGGAGAAGGAAGTAC 600 ************* ********************************************** consensus_8498#0 CGCTGGAGGAAAATCTGAACCGTGTGATGGCGG-ACACGGAAGTCGCACAAACGATCGAT 657 consensus_8498#1 CGCTGGAGGAAAATCTGAACCGTGTGATGGCGGGACACGGAAGTCGCACAAACGATCGAT 660 ********************************* ************************** consensus_8498#0 CAGGCGATTGCGGTTCTCAGCGTCGGCGACCCGTCTGCCGATCGGCATCCGGATAAGCGC 717 consensus_8498#1 CAGGCGATTGCGGTTCTCAGCGTCGGCGACCCCG-------------------------- 694 ******************************** consensus_8498#0 ATGAAGGCAGCATACAAGGCATACGAAGAGGAGGAATTGAAGC 760 consensus_8498#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||