cluster # 85

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Anopheles gambiae
cluster # 85 cluster # 85 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_85#0 length = 664 sequences # 1

consensus_85#1 length = 611 sequences # 1

consensusID : consensus_85#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [CCGCCGACTATTGCTGGAACGCACCGATCTCGGACCGTTTTGCGAGTCGAGCCCGACAAGAAGCAAGCTTCTGTTTGATCTGCTGCTACGCCACTGGCAAACTTCCTTGATCAATAAGAAGCAGGTGTATCACGTGCAACGTTCGGAAGGCCAAGACGAGGAAGACGAGTATTATGAGTATAACTATGCTGGGTACGATAGCGACGATGAGGAGGAATACTCCGACGAAATGCATGCTATTGCTGTTTACCCTTTGTTTAGCATGGTGAATCATAGCTGCATACCAAACGTGGCCCCGATCCATCTTCTCGATGGTAGGTGTGCTTTTGTAGCTACCCGACCGATCGCTGCCGGCGAACAGCTGTTCGACGTCTATGCATTTGCTTCAATGGACTTTGATCGTTCGTTCCGTATATTTTGCCTGAGAAAGTCCTACTATTTCAAGTGTCGCTGCGCAGTATGTGAATCTTTTTCGTACGTGGATGTCCGTAATATGACCCCACGGGAAACAAATTTTCTCCGACTGCTACGTATGGTGAATGTCCCGGAGCATCAATTACCGATGCTGGTAGAGCACATGAACGAAGTGGGAAGGCGCTATCCTAAGCATCAGTACACGGCCGCGGAAGTGGTACTGGTGCGTATCTTGCGCATGATGCACAGC]

[+] EMBL BM579067             [CCGCCGACTATTGCTGGAACGCACCGATCTCGGACCGTTTTGCGAGTCGAGCCCGACAAGAAGCAAGCTTCTGTTTGATCTGCTGCTACGCCACTGGCAAACTTCCTTGATCAATAAGAAGCAGGTGTATCACGTGCAACGTTCGGAAGGCCAAGACGAGGAAGACGAGTATTATGAGTATAACTATGCTGGGTACGATAGCGACGATGAGGAGGAATACTCCGACGAAATGCATGCTATTGCTGTTTACCCTTTGTTTAGCATGGTGAATCATAGCTGCATACCAAACGTGGCCCCGATCCATCTTCTCGATGGTAGGTGTGCTTTTGTAGCTACCCGACCGATCGCTGCCGGCGAACAGCTGTTCGACGTCTATGCATTTGCTTCAATGGACTTTGATCGTTCGTTCCGTATATTTTGCCTGAGAAAGTCCTACTATTTCAAGTGTCGCTGCGCAGTATGTGAATCTTTTTCGTACGTGGATGTCCGTAATATGACCCCACGGGAAACAAATTTTCTCCGACTGCTACGTATGGTGAATGTCCCGGAGCATCAATTACCGATGCTGGTAGAGCACATGAACGAAGTGGGAAGGCGCTATCCTAAGCATCAGTACACGGCCGCGGAAGTGGTACTGGTGCGTATCTTGCGCATGATGCACAGC]




>consensus_85#0
CCGCCGACTATTGCTGGAACGCACCGATCTCGGACCGTTTTGCGAGTCGAGCCCGACAAG
AAGCAAGCTTCTGTTTGATCTGCTGCTACGCCACTGGCAAACTTCCTTGATCAATAAGAA
GCAGGTGTATCACGTGCAACGTTCGGAAGGCCAAGACGAGGAAGACGAGTATTATGAGTA
TAACTATGCTGGGTACGATAGCGACGATGAGGAGGAATACTCCGACGAAATGCATGCTAT
TGCTGTTTACCCTTTGTTTAGCATGGTGAATCATAGCTGCATACCAAACGTGGCCCCGAT
CCATCTTCTCGATGGTAGGTGTGCTTTTGTAGCTACCCGACCGATCGCTGCCGGCGAACA
GCTGTTCGACGTCTATGCATTTGCTTCAATGGACTTTGATCGTTCGTTCCGTATATTTTG
CCTGAGAAAGTCCTACTATTTCAAGTGTCGCTGCGCAGTATGTGAATCTTTTTCGTACGT
GGATGTCCGTAATATGACCCCACGGGAAACAAATTTTCTCCGACTGCTACGTATGGTGAA
TGTCCCGGAGCATCAATTACCGATGCTGGTAGAGCACATGAACGAAGTGGGAAGGCGCTA
TCCTAAGCATCAGTACACGGCCGCGGAAGTGGTACTGGTGCGTATCTTGCGCATGATGCA
CAGC

consensusID : consensus_85#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [AGAATCGGCACGAGGTGTAGCCGACAAGAAGCAAGCTTCTCTTTGATCTGCTGGCTACGCCACTGGCGAACTTCCTTGATCAATAAGAAGCAGGTGTATCACGTGCAACGTTCGGAAGGCCAAGACGAGGAAGACGAGTATTATGAGTATAACTATGCTGGGTACGATAGCGACGATAGGAGGAATACTCCGACGAAATGCATGCTATTGCTGTTTACCCTTTGTTTAGCATGGTGAATCATAGCTGGCGATACCAAACGTGGGCGCCGGATCCATCTTCTCGATGGTAGGTGTGCTTATTGTAGGCTACCCGACCGATCGCTGCCGGCGAACAGCGTGTTCGACGTCTATGCNGTTTGCTTCAATGGACTTTGATCGTTCGTTCCGTATATTTTGCCTGAGAAAGTCACTACTATTTCAAAGTGTCGCGTGCGCAGTATGTGAATCTTGTTTCCGTACGTGGATGTCCGTGCAANTATGANCCCACGGGAAAACAAAGTTTTCTCACGACTGACTAACGTATTGGTGAAATAGTCCCGGGAGGCANTCGAATTAACCGATGACTGGGTAGGAGCGACCGTTGANCNGAAGTTGGGAAAGGGNNGCTTATA]

[+] EMBL BX469245             [AGAATCGGCACGAGGTGTAGCCGACAAGAAGCAAGCTTCTCTTTGATCTGCTGGCTACGCCACTGGCGAACTTCCTTGATCAATAAGAAGCAGGTGTATCACGTGCAACGTTCGGAAGGCCAAGACGAGGAAGACGAGTATTATGAGTATAACTATGCTGGGTACGATAGCGACGATAGGAGGAATACTCCGACGAAATGCATGCTATTGCTGTTTACCCTTTGTTTAGCATGGTGAATCATAGCTGGCGATACCAAACGTGGGCGCCGGATCCATCTTCTCGATGGTAGGTGTGCTTATTGTAGGCTACCCGACCGATCGCTGCCGGCGAACAGCGTGTTCGACGTCTATGCNGTTTGCTTCAATGGACTTTGATCGTTCGTTCCGTATATTTTGCCTGAGAAAGTCACTACTATTTCAAAGTGTCGCGTGCGCAGTATGTGAATCTTGTTTCCGTACGTGGATGTCCGTGCAANTATGANCCCACGGGAAAACAAAGTTTTCTCACGACTGACTAACGTATTGGTGAAATAGTCCCGGGAGGCANTCGAATTAACCGATGACTGGGTAGGAGCGACCGTTGANCNGAAGTTGGGAAAGGGNNGCTTATA]




>consensus_85#1
AGAATCGGCACGAGGTGTAGCCGACAAGAAGCAAGCTTCTCTTTGATCTGCTGGCTACGC
CACTGGCGAACTTCCTTGATCAATAAGAAGCAGGTGTATCACGTGCAACGTTCGGAAGGC
CAAGACGAGGAAGACGAGTATTATGAGTATAACTATGCTGGGTACGATAGCGACGATAGG
AGGAATACTCCGACGAAATGCATGCTATTGCTGTTTACCCTTTGTTTAGCATGGTGAATC
ATAGCTGGCGATACCAAACGTGGGCGCCGGATCCATCTTCTCGATGGTAGGTGTGCTTAT
TGTAGGCTACCCGACCGATCGCTGCCGGCGAACAGCGTGTTCGACGTCTATGCNGTTTGC
TTCAATGGACTTTGATCGTTCGTTCCGTATATTTTGCCTGAGAAAGTCACTACTATTTCA
AAGTGTCGCGTGCGCAGTATGTGAATCTTGTTTCCGTACGTGGATGTCCGTGCAANTATG
ANCCCACGGGAAAACAAAGTTTTCTCACGACTGACTAACGTATTGGTGAAATAGTCCCGG
GAGGCANTCGAATTAACCGATGACTGGGTAGGAGCGACCGTTGANCNGAAGTTGGGAAAG
GGNNGCTTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_85#0      CCGCCGACTATTGCTGGAACGCACCGATCTCGGACCGTTTTGCGAGTCGAGCCCGACAAG 60
consensus_85#1      ------------------------------AGAATCGGC--ACGAGGTGTAGCCGACAAG 28
                                                   * * **     ****  *   ********

consensus_85#0      AAGCAAGCTTCTGTTTGATCTGCTG-CTACGCCACTGGCAAACTTCCTTGATCAATAAGA 119
consensus_85#1      AAGCAAGCTTCTCTTTGATCTGCTGGCTACGCCACTGGCGAACTTCCTTGATCAATAAGA 88
                    ************ ************ ************* ********************

consensus_85#0      AGCAGGTGTATCACGTGCAACGTTCGGAAGGCCAAGACGAGGAAGACGAGTATTATGAGT 179
consensus_85#1      AGCAGGTGTATCACGTGCAACGTTCGGAAGGCCAAGACGAGGAAGACGAGTATTATGAGT 148
                    ************************************************************

consensus_85#0      ATAACTATGCTGGGTACGATAGCGACGATGAGGAGGAATACTCCGACGAAATGCATGCTA 239
consensus_85#1      ATAACTATGCTGGGTACGATAGCGACGAT-AGGAGGAATACTCCGACGAAATGCATGCTA 207
                    ***************************** ******************************

consensus_85#0      TTGCTGTTTACCCTTTGTTTAGCATGGTGAATCATAGCTGC--ATACCAAACGTGGCCCC 297
consensus_85#1      TTGCTGTTTACCCTTTGTTTAGCATGGTGAATCATAGCTGGCGATACCAAACGTGGGCGC 267
                    ****************************************   ************* * *

consensus_85#0      --GATCCATCTTCTCGATGGTAGGTGTGCTT-TTGTAG-CTACCCGACCGATCGCTGCCG 353
consensus_85#1      CGGATCCATCTTCTCGATGGTAGGTGTGCTTATTGTAGGCTACCCGACCGATCGCTGCCG 327
                      ***************************** ****** *********************

consensus_85#0      GCGAACAGC-TGTTCGACGTCTATGCA-TTTGCTTCAATGGACTTTGATCGTTCGTTCCG 411
consensus_85#1      GCGAACAGCGTGTTCGACGTCTATGCNGTTTGCTTCAATGGACTTTGATCGTTCGTTCCG 387
                    ********* ****************  ********************************

consensus_85#0      TATATTTTGCCTGAGAAAGTC-CTACTATTTCAA-GTGTCGC-TGCGCAGTATGTGAATC 468
consensus_85#1      TATATTTTGCCTGAGAAAGTCACTACTATTTCAAAGTGTCGCGTGCGCAGTATGTGAATC 447
                    ********************* ************ ******* *****************

consensus_85#0      TT--TTTCGTACGTGGATGTCCGT---AATATGACCCCACGGGAAACAAATTTTCTCCGA 523
consensus_85#1      TTGTTTCCGTACGTGGATGTCCGTGCAANTATGANCCCACGGGAAAACAAAGTTTTCTCA 507
                    **  ** *****************   * ***** ***********  **  ** **  *

consensus_85#0      CTGCTACGTATGGTGAATGTCCCGGAGCATCAATTACCGATGCTGGTAGAGCACATGAAC 583
consensus_85#1      CGACT------GACTAACGTATTGGTGAAATAGTCCCGGGAGGCANTCGAATTAACCGAT 561
                    *  **      *   ** **   ** * *  * *  * *  *    * **    *   * 

consensus_85#0      GAAGTGGGAAGGCGCTATCCTAAGCATCAGTACACGGCCGCGGAAGTGGTACTGGTGCGT 643
consensus_85#1      GAC-TGGGTAGGAGCGACC------GTTGANCNGAAGTTGGGAAAGGGNNGCTTATA--- 611
                    **  **** *** ** * *       *         *  * * *** *   **  *    

consensus_85#0      ATCTTGCGCATGATGCACAGC 664
consensus_85#1      ---------------------