Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8531 cluster # 8531       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8531#0 length = 1861 sequences # 7  
consensus_8531#1 length = 674 sequences # 3  
consensus_8531#2 length = 512 sequences # 1  

consensusID : consensus_8531#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1861
fasta sequence
                              [ATTTATTATACCTTCGGTACGTTTGCGCTTACTCCCCCTCCTTCCGACCATTACAACCGACTACCATTCTGACTTCAATAGGTTTTAGCTAAACAGTATTAACAGACTTTTATTTTTACTCCCATTTTGTTGTCGCATCCTTTTTGCTCTTCTTCTAACTTTATCTTTAAATTTTTCTTCTGCTCATTTTTAATGCTTAGAAACGAAAAAACAAAAAGAAAAAGGTCACAGTAATACCTCTACTACACAACAATCACGCTTACACCTCCTGACGACCGCATGGTGATGACAAAATGTCGTTTTCATGACGCAGGAATGGAGGTGAGATATTTTATATCAGATTTTTTATTCTTTTTACAAGCAGTAAGGGATAAAACTATACAAACGGACACCCACCAAGCCTTTTGTTCTCTTTTTTTTTTTAAACA-GCAATCGTTTTGCATCTGGCTTTAGCTTTTGACACGCTGGTGGAACTTTAACATTGACAAAATTGCGAATATGTGTGTGTTGGATAGTGGCAGTAATTGTAACAGACAACAAAACAAACCCGATTACACACAGAGAGAAGGAGAGAAAGAGAGAACGAGAAAGAGAAAAAAAAAGAAGTCCACATAACGAGGGATCGTCTCACACGTACCAACCAGGGCAGGAAGTAGACGTTATTAACGATTTAAGTGGATAACAGACACGGGGAGCCGACGGCTCTATATACAAAGTCACACATACACACTGC-------C-TCAACGGACAAATGGGGAACCACATCAAACAGAACTGTTTTATTTTTACAAAATGTACACTTGGCGCATTGTGGAATTTCCAC--AAAAAAAAAACGATACAAAAGAAGAAGTGTGGAATGATGCTGCTTCCTAATCCAACAGATTGCGCTTAATGTTTAATGTTTTGCGCACCAGAAAACCATGCTAACGGGATCGGCCATGGCCATTCACTTTCCCATGCGTGTACCCAATGATAAGCAAATTTTCGTTGCAATTTCCGAGGATATCAATCACCTTTTCTCGGGGTGTGAATGTTGAGCCACGCCAGATGAGATGGGCCACAAGGGCGAAATAATAGGGAAGGGAGAGAGAGAGACAAGAGAAACAGTAAAGCAAATCAAACTTAATCAAAGAGGTGGGCAAAGAGCATGATTGTGCGAGTAATCGATATCGGCCCACCCTCCCTTTCGATGGAGCGTTTTGTTCTTTCTCTCTTTCTCTCTTTTCCCCCACGTTGGCGTTTCCGGCAGTGGCAATGGCCACCAATTTGCAACGTATTATGCGGCGCACGGTACTTTAACTATTTTTGGCATCTTTGTTAACCTTCAATTTCTGCAAGCAGTCTGCTCCAATCACTCACGCCAAAAGGTTCAATTCTCGACCCATCGATTTAAGGGCAAAAGCGAGAAGGACAGACAGGCAAGTACCGAAACAACACTCTGGCATTTGAAAGTGAAAGAAACAGTGTATAATTTTGCAAAAAAAAAAGAACATTAAAAAAGCAGATAGTTATCTACACAAGTGGATGAAAGATTAGCACGTTTTGTATTAACTTTTTGTTTTTTTTCTTCTTCTTTTGCTTCATGTCCTTCTCGTGTGTTACGGTGTTTTCGTTACATATGTTTCATTGTTTTAGTTATTATTCGTATCGTTCTACTGTATTCTTACTATCATGGTTGGTTTGTGTTCGTGGTATCTATTAGTGTGTGTTTTCGGTTCTCTTTTTCCCTTTTCTTTCCCCCCTATTAAATACATTTTGCTGATGCATTACCGTTTCTCTGCTGCTCCACTTGCAGCCACGTGCAGCAACGTGCTTGCGCGTATAACTTAACTCTTCCCGTTTTCTGCGCAGTGCCACAGCGTCTCGG]

[-] EMBL BX608578             [ATTTATTATACCTTCGGTACGTTTGCGCTTACTCCCCCTCCTTCCGACCATTACAACCGACTACCATTCTGACTTCAATAGGTTTTAGCTAAACAGTATTAACAGACTTTTATTTTTACTCCCATTTTGTTGTCGCATCCTTTTTGCTCTTCTTCTAACTTTATCTTTAAATTTTTCTTCTGCTCATTTTTAATGCTTAGAAACGAAAAAACAAAAAGAAAAAGGTCACAGTAATACCTCTACTACACAACAATCACGCTTACACCTCCTGACGACCGCATGGTGATGACAAAATGTCGTTTTCATGACGCAGGAATGGAGGTGAGATATTTTATATCAGATTTTTTATTCTTTTTACAAGCAGTAAGGGATAAAACTATACAAACGGACACCCACCAAGCCTTTTGTTCTCTTTTTTTTTTTAAACATGCAATCGTTTTGCATCTGGCTTTAGCTTTTGACACGCTGGTGGAACTTTAACATTGACAAAATTGCGAATATGTGTGTGTTGGATAGTGGCAGTAATTGTAACAGACAACAAAACAAACCCGATTACACACAGAGAGAAGGAGAGAAAGAGAGAACGAGAAAGAGAAAAAAAAAGAAGTCCACATAACGAGGGATCGTCTCACACGTACCAACCAGGGCAGGAAGTAGACGTTATTAACGATTTAAGTGGATAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL BM621707             [                                                                               AGGTTTTAGCTAAACAGTATTAACAGACTTTTATTTTTACTCCCATTTTGTTGTCGCATCCTTTTTGCTCTTCTTCTAACTTTATCTTTAAATTTTTCTTCTGCTCATTTTTAATGCTTAGAAACGAAAAAACAAAAAGAAAAAGGTCACAGTAATACCTCTACTACACAACAATCACGCTTACACCTCCTGACGACCGCATGGTGATGACAAAATGTCGTTTTCATGACGCAGGAATGGAGGTGAGATATTTTATATCAGATTTTTTATTCTTTTTACAAGCAGTAAGGGATAAAACTATACAAACGGACACCCACCAAGCCTTTTGTTCTCTTTTTTTTTTTAAACA GCAATCGTTTTGCATCTGGCTTTAGCTTTTGACACGCTGGTGGAACTTTAACATTGACAAAATTGCGAATATGTGTGTGTTGGATAGTGGCAGTAATTGTAACAGACAACAAAACAAACCCGATcgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX623919             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCGTTTTGCATCTGGCTTTAGCTTTTGACACGCTGGTGGAACTTTAACATTGACAAAATTGCGAATATGTGTGTGTTGGATAGTGGCAGTAATTGTAACAGACAACAAAACAAACCCGATTACACACAGAGAGAAGGAGAGAAAGAGAGAACGAGAAAGAG AAAAAAAAGAAGTCCACATAACGAGGGATCGTCTCACACGTACCAACCAGGGCAGGAAGTAGACGTTATTAACGATTTAAGTGGATAACAGACACGGGGAGCCGACGGCTCTATATACAAAGACACACATACACACTGCACACACGCTTCAATAGAAAAATGGGGAACCACATCAAACAGAACTGTTTTATTTTTACAAAATGTACACTTGGCGCATTGTGAAATTTCCACCAAAAAAAAAAACCGTACAAAAGAAGAAGTGTGGAATGATGCTGCTTCCTAATCCAACAGATTGCGCTTAATGTTTAATGTTTTGCGCACCAGAAAACCATGCTAACGGGAACGGCCATGGCCATTCACTTTCCCATGCGTGTACCCAATGATAAGCAAATTTTCGTTGCAATTTCCGAGGATATCAATCACCTTTTCTCGGGGTGTGAATGTTGAGCCACGCCAGATGAGATGGGCCACNANGGCGAAATAATAGGGAAGGGANAGAGAGAGACAAGAGAAACAGTCAAGCAAATCAAACTTTATCAAAGAGGNGGGCAAAGAGCATGATTGTGCGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BX612256             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGGCAGTAATTGTAACAGACAACAAAACAAACCCGATTACACACAGAGAGAAGGAGAGAAAGAGAGAACGAGAAAGAGAAAAAAAAAGAAGTCCACATAACGAGGGATCGTCTCACACGTACCAACCAGGGCAGGAAGTAGACGTTATTAACGATTTAAGTGGATAACAGACACGGGGAGCGGACGGCTCTATATACAAAGTCACACATACACACTGC       C TCAACGGACAAATGGGGAACCACAT  AACAGAACTGTTTTATTTTTACAAAATGTACACTTGGCGCATTGTGGAATTTCCAC  AAAAAAAAAACGATACAAAAGAAGAAGTGTGGAATGATGCTGCTTCCTAATCCAACAGATTGCGCTTAATGTTTAATGTTTTGCGCACCAGAAAACCATGCTAACGGGATCGGCCATGGCCATTCACTTTCCCATGCGTGTACCCAATGATAAGCAAATTTTCGTTGCAATTTCCGAGGATATCAATCACCTTTTCTCGGGGTGTGAATGTTGAGCCACGCCAGATGAGATGGGCCACAAGGGCGAAATAATAGGGAAGGGAGAGAGAGAGACAAGAGAAACAGTAAAGCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BX627246             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCTCTATATACAAAGTCACACATACACACTGC       N TCAACGGACAAATGGGGAACCACATCAAACAGAACTGTTTTATTTTTACAAAATGTACACTTGGCGCATTGTGGAATTTCCAC  AAAAAAAAAACGATACAAAAGAAGAAGTGTGGAATGATGCTGCTTCCTAATCCAACAGATTGCGCTTAATGTTTAATGTTTTGCGCACCAGAAAACCATGCTAACGGGATCGGCCATGGCCATTCACTTTCCCATGCGTGTACCCAATGATAAGCAAATTTTCGTTGCAATTTCCGAGGATATCAATCACCTTTTCTCGGGGTGTGAATGTTGAGCCACGCCAGATGAGATGGGCCACAAGGGCGAAATAATAGGGAAGGGAGAGAGAGAGACAAGAGAAACAGTAAAGCAAATCATACTTAATCAAAGAGGTGGGCAAAGAGCATGATTGTGCGAGTAATCGATATCGGCCCACCCTCCCTTTCGATGGAGCGTTTTGTTCTTTCTCTCTTTCTCTCTTTTCCCCCACGTTGGCGTTTCCGGCAGTGGCAATGGCCACCAATTTGCAACGTATTATGCGGCGCACGGTACTTTAACTATTTTTGGCATCTTTGTTAACCTTCAATTTCTGCAAGCAGTCTGCTCCAATCACTCACTCCAAATGGTTCAATTCTCAACCCATCGATTTAAGGACAAAAGCGAGAAGGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL BM633378             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAATGTTGAGCCACGCCAGATGAGATGGGCCACAAGGGCGAAATAATAGGGAAGGAAGAGAGAGAGACAAGAGAAACAGTAAAGCAAATCAAACTTAATCAAAGAGGTGGGCAAAGAGCATGATTGTGCGAGTAATCGATATCGGCCCACCCTCCCTTTCGATGGAGCGTTTTGTTCTTTCTCTCTTTCTCTCTTTTTCCGCATGTTGGCGTTTCCGGCAGTGGCAATGGCCACCAATTTGCAACGTATTATGCGGCGCACGGTACTTTAACTATTTTTGGCATCTTTGTTAACCGTCAATTTCTGCAAGCAGTCTGCTCCAATCACTCACGCCAAAAGGTTCAATTCTCGACCCATTGATTTAAGGGCAAAAGCGAGAAGGACAGACAGGCAAGTACCGAAACAACACTCTGGCATTTGAAAGTGAAAGAAACAGTGTATAATTTTGCAAAAAAAAAAGAACATTAAAAAAGCAGATAGTTATCTACACAAGTGGATGAAAGATTAGCACGTTTTGTATTAACTTTTTGTTTTTTTTCTTCTTCTTTTGCTTCATGTCCTTCTCGTGTGTTACGGTGTTTTCGTTACATATGTTTCATTGTTTTAGTTATTATTCGTATCGTTCTACTGTATTCTTACTATCATGGTTGGTTTGTGTTCGTGGTATCTATTAGTGTGTGTTTTCGG                                                                                                                                                        ]
[-] EMBL BM628417             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ctTCCCTTTCGATGGAGCGTTTTGTTCTTTCTCTCTTTCTCTCTTTTCCCCCACGTTGGCGTTTCCGGCAGTGGCAATGGCCACCAATTTGCAACGTATTATGCGGCGCACGGTACTTTAACTATTTTTGGCATCTTTGTTAACCTTCAATTTCTGCAAGCAGTCTGCTCCAATCACTCACGCCAAAAGGTTCAATTCTCGACCCATCGATTTAAGGGCAAAAGCGAGAAGGACAGACAGGCAAGTACCGAAACAACACTCTGGCATTTGAAAGTGAACGAAACAGTGTATAATTTT   ACAAAAAAAGAACATTAAAAAAGCAGATAGTTATCTACACAAGTGGATGAAAGATTAGTACGTTTTGTATTACCTTTTTG   TTTTTCCTCTTCTTTTGCTTCATGTCCTTCTCGTGTGTTACGGTGTTTTCGTTACATATGTTTCATTGTTTTAGTTATTATTCGTATCGTTCTACTGTATTCTTACTATCATGGTTGGTTTGTGTTTGTGGTATCTATTTGTGTGTGTTTTTTATTCTCTTTTTCCCTTTTCTTTCCCCCCTATTAAATACATTTTGCTGATGCATTACCGTTTCTCTGCTGCTCCACTTGCAGCCACGTGCAGCAACGTGCTTGCGCGTATAACTTAACTCTTCCCGTTTTCTGCGCAGTGCCACAGCGTCTCGG]


>consensus_8531#0 ATTTATTATACCTTCGGTACGTTTGCGCTTACTCCCCCTCCTTCCGACCATTACAACCGA CTACCATTCTGACTTCAATAGGTTTTAGCTAAACAGTATTAACAGACTTTTATTTTTACT CCCATTTTGTTGTCGCATCCTTTTTGCTCTTCTTCTAACTTTATCTTTAAATTTTTCTTC TGCTCATTTTTAATGCTTAGAAACGAAAAAACAAAAAGAAAAAGGTCACAGTAATACCTC TACTACACAACAATCACGCTTACACCTCCTGACGACCGCATGGTGATGACAAAATGTCGT TTTCATGACGCAGGAATGGAGGTGAGATATTTTATATCAGATTTTTTATTCTTTTTACAA GCAGTAAGGGATAAAACTATACAAACGGACACCCACCAAGCCTTTTGTTCTCTTTTTTTT TTTAAACAGCAATCGTTTTGCATCTGGCTTTAGCTTTTGACACGCTGGTGGAACTTTAAC ATTGACAAAATTGCGAATATGTGTGTGTTGGATAGTGGCAGTAATTGTAACAGACAACAA AACAAACCCGATTACACACAGAGAGAAGGAGAGAAAGAGAGAACGAGAAAGAGAAAAAAA AAGAAGTCCACATAACGAGGGATCGTCTCACACGTACCAACCAGGGCAGGAAGTAGACGT TATTAACGATTTAAGTGGATAACAGACACGGGGAGCCGACGGCTCTATATACAAAGTCAC ACATACACACTGCCTCAACGGACAAATGGGGAACCACATCAAACAGAACTGTTTTATTTT TACAAAATGTACACTTGGCGCATTGTGGAATTTCCACAAAAAAAAAACGATACAAAAGAA GAAGTGTGGAATGATGCTGCTTCCTAATCCAACAGATTGCGCTTAATGTTTAATGTTTTG CGCACCAGAAAACCATGCTAACGGGATCGGCCATGGCCATTCACTTTCCCATGCGTGTAC CCAATGATAAGCAAATTTTCGTTGCAATTTCCGAGGATATCAATCACCTTTTCTCGGGGT GTGAATGTTGAGCCACGCCAGATGAGATGGGCCACAAGGGCGAAATAATAGGGAAGGGAG AGAGAGAGACAAGAGAAACAGTAAAGCAAATCAAACTTAATCAAAGAGGTGGGCAAAGAG CATGATTGTGCGAGTAATCGATATCGGCCCACCCTCCCTTTCGATGGAGCGTTTTGTTCT TTCTCTCTTTCTCTCTTTTCCCCCACGTTGGCGTTTCCGGCAGTGGCAATGGCCACCAAT TTGCAACGTATTATGCGGCGCACGGTACTTTAACTATTTTTGGCATCTTTGTTAACCTTC AATTTCTGCAAGCAGTCTGCTCCAATCACTCACGCCAAAAGGTTCAATTCTCGACCCATC GATTTAAGGGCAAAAGCGAGAAGGACAGACAGGCAAGTACCGAAACAACACTCTGGCATT TGAAAGTGAAAGAAACAGTGTATAATTTTGCAAAAAAAAAAGAACATTAAAAAAGCAGAT AGTTATCTACACAAGTGGATGAAAGATTAGCACGTTTTGTATTAACTTTTTGTTTTTTTT CTTCTTCTTTTGCTTCATGTCCTTCTCGTGTGTTACGGTGTTTTCGTTACATATGTTTCA TTGTTTTAGTTATTATTCGTATCGTTCTACTGTATTCTTACTATCATGGTTGGTTTGTGT TCGTGGTATCTATTAGTGTGTGTTTTCGGTTCTCTTTTTCCCTTTTCTTTCCCCCCTATT AAATACATTTTGCTGATGCATTACCGTTTCTCTGCTGCTCCACTTGCAGCCACGTGCAGC AACGTGCTTGCGCGTATAACTTAACTCTTCCCGTTTTCTGCGCAGTGCCACAGCGTCTCG G



consensusID : consensus_8531#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 674
fasta sequence
                              [CATGGTGATGACAAAATGTCGTTTTCATGACGCAGGAATGGAGGTGAGATATTTTATATCAGATTTTTTATTCTTTTTCCAAGCAGTAAGGGATAAAACTATACAAACCGGACACCCCCCCAAGCCTTTTGTTCTCTTTTTTTTTTTAAACAGCAATCGTTTTGCATCTGGCTTTAGCTTTTGACACGCTGGTGGAACTTTAACATTGACAAAATTGCGA-ATATGTGTGTGTTGGATAGTGGCAGTAATTGTAACAGACAACAAAACAAACCCGATTACACACAGAGAGAAGGAGAGAAAGAGAGAACGAGAAAGAGAAAAAAAAAGAAGTCCACATAACGAGGGATCGTCTCACACGTACCAACCAGGGCAGGAAGTAGACGTTATTAACGATTTAAGTGGATAACAGACACGGGGAGCGGACGGCTCTATATACAAAGTCACACATACACACTGCCTCAACGGACAAATGGGGAACCACATCAAACAGAACTGTTTTATTTTTACAAAATGTACACTTGGCGCATTGTGGAATTTCCACAAAAAAAAAACGATACAAAAGAAGAAGTGTGGAATGATGCTGCTTCCTAATCCAACAGATTGCGCTTAATGTTTAATGTTTTGCGCACCAGAAAACCATGCTAACGCGGACGCGTGGGCGGACGCGTGGGCGG]

[-] EMBL BM582237             [CATGGTGATGACAAAATGTCGTTTTCATGACGCAGGAATGGAGGTGAGATATTTTATATCAGATTTTTTATTCTTTTTCCAAGCAGTAAGGGATAAAACTATACAAACCGGACACCCCCCCAAGCCTTTTGTTCTCTTTTTTTTTTTAAACAGCAATCGTTTTGCATCTGGCTTTAGCTTTTGACACGCTGGTGGAACTTTAACATTGACAAAATTGCGA ATATGTGTGTGTTGGATAGTGGCAGTAATTGTAACAGACAACAAAACAAACCCGATTACACACAGAGAGAAGGAGAGAAAGAGAGAACGAGAAAGAGAAAAAAAAAGAAGTCCACATAACGAGGGATCGTCTCACACGTACCAACCAGGGCAGGAAGTAGACGTTATTAACGATTTAAGTGGATAACAGACACGGGGAGCGGACGGCTCTATATACAAAGTCACACATACACACTGCCTCAACGGACAAATGGGGAACCACATCAAACAGAACTGTTTTATTTTTACAAAATGTACACTTGGCGCATTGTGGAATTTCCACAAAAAAAAAACGATACAAAAGAAGAAGTGTGGAATGATGCTGCTTCCTAATCCAACAGATTGCGCTTAATGTTTAATGTTTTGCGCACCAGAAAACCATGCTAACGCGGACGCGTGGGCGGACGCGTGGGCGG]
[-] EMBL BX618148             [                                                                                                                                                            TCGTTTTGCATCTGGCTTTAACTTTTGACACGCTGGTGGAACTTTAACATTGACAAAATTGCGATATATGTGTGTGTTGGATAG                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BX626048             [                                                                                                                                                                                                                                                                                         CACAGAGAGAAGGAGAGAAAGAGAGANCGAGAAAGAGAAAAAAAAAGAAGTCCACATANCGAGGGATCGTCTCACACGTACCAACCAGGGCAGGAAGTAGACGTTATTAACGATTTAAGTGGATAACAGACACGGGGAGCGGNCGGCTCTATATACAAAGTCACACATACACNCTGCCTCANCGGACAAATGGGGAACCACATCAAACAGAACTGTTTTATTTTTACAAAATGTACACTTGGCGCATTGTGGAATTTCCACAAAAAAAAAACGATNCAAAAGA                                                                                                               ]


>consensus_8531#1 CATGGTGATGACAAAATGTCGTTTTCATGACGCAGGAATGGAGGTGAGATATTTTATATC AGATTTTTTATTCTTTTTCCAAGCAGTAAGGGATAAAACTATACAAACCGGACACCCCCC CAAGCCTTTTGTTCTCTTTTTTTTTTTAAACAGCAATCGTTTTGCATCTGGCTTTAGCTT TTGACACGCTGGTGGAACTTTAACATTGACAAAATTGCGAATATGTGTGTGTTGGATAGT GGCAGTAATTGTAACAGACAACAAAACAAACCCGATTACACACAGAGAGAAGGAGAGAAA GAGAGAACGAGAAAGAGAAAAAAAAAGAAGTCCACATAACGAGGGATCGTCTCACACGTA CCAACCAGGGCAGGAAGTAGACGTTATTAACGATTTAAGTGGATAACAGACACGGGGAGC GGACGGCTCTATATACAAAGTCACACATACACACTGCCTCAACGGACAAATGGGGAACCA CATCAAACAGAACTGTTTTATTTTTACAAAATGTACACTTGGCGCATTGTGGAATTTCCA CAAAAAAAAAACGATACAAAAGAAGAAGTGTGGAATGATGCTGCTTCCTAATCCAACAGA TTGCGCTTAATGTTTAATGTTTTGCGCACCAGAAAACCATGCTAACGCGGACGCGTGGGC GGACGCGTGGGCGG



consensusID : consensus_8531#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence
                              [TTTCCATTGTCTTTAGTTATTATTCGTATCGTTCTACTGTTATTCTTACTATCATGTTTGNCTTNCGTGTTCGTGGTATCTATTAGTGTGCTCGTTCTTTATTCGCTTTTTCCCTTTTCTTCTCCCCCCCCCCCTTACTTAAATACATTTTGCTGATGCATTACCGTTTCTCTGCCTGCTCCACTTGCAGCCACGTGCAGCAACGTGCTTGCGCGTATAACTTAACTCTTCCCGTTTTCTGCGCAGTGCCACAGCGTCTTGACGGAACTTTGAAACATCTCGCTACCTGCTCTCACCTCCATTTGTTTTTTAAACGTAACAAAACAACAAAAAAAACAACAAGAAACATACATCACAATGGCTTGCCAGTCGTGCACGCGCGCGCACACTTGCGACGCGCCCGATGCGAAAATGCGTATTGACTTTTGCGTGCAAAACATTCGCTCTCTCTCTCTCTCTCTCCCTTTTATGATGCGCATTTTTATGCTTTCGTCCTNCGTGCCGATTCTTGG]

[-] EMBL BX468102             [TTTCCATTGTCTTTAGTTATTATTCGTATCGTTCTACTGTTATTCTTACTATCATGTTTGNCTTNCGTGTTCGTGGTATCTATTAGTGTGCTCGTTCTTTATTCGCTTTTTCCCTTTTCTTCTCCCCCCCCCCCTTACTTAAATACATTTTGCTGATGCATTACCGTTTCTCTGCCTGCTCCACTTGCAGCCACGTGCAGCAACGTGCTTGCGCGTATAACTTAACTCTTCCCGTTTTCTGCGCAGTGCCACAGCGTCTTGACGGAACTTTGAAACATCTCGCTACCTGCTCTCACCTCCATTTGTTTTTTAAACGTAACAAAACAACAAAAAAAACAACAAGAAACATACATCACAATGGCTTGCCAGTCGTGCACGCGCGCGCACACTTGCGACGCGCCCGATGCGAAAATGCGTATTGACTTTTGCGTGCAAAACATTCGCTCTCTCTCTCTCTCTCTCCCTTTTATGATGCGCATTTTTATGCTTTCGTCCTNCGTGCCGATTCTTGG]


>consensus_8531#2 TTTCCATTGTCTTTAGTTATTATTCGTATCGTTCTACTGTTATTCTTACTATCATGTTTG NCTTNCGTGTTCGTGGTATCTATTAGTGTGCTCGTTCTTTATTCGCTTTTTCCCTTTTCT TCTCCCCCCCCCCCTTACTTAAATACATTTTGCTGATGCATTACCGTTTCTCTGCCTGCT CCACTTGCAGCCACGTGCAGCAACGTGCTTGCGCGTATAACTTAACTCTTCCCGTTTTCT GCGCAGTGCCACAGCGTCTTGACGGAACTTTGAAACATCTCGCTACCTGCTCTCACCTCC ATTTGTTTTTTAAACGTAACAAAACAACAAAAAAAACAACAAGAAACATACATCACAATG GCTTGCCAGTCGTGCACGCGCGCGCACACTTGCGACGCGCCCGATGCGAAAATGCGTATT GACTTTTGCGTGCAAAACATTCGCTCTCTCTCTCTCTCTCTCCCTTTTATGATGCGCATT TTTATGCTTTCGTCCTNCGTGCCGATTCTTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8531#0      ATTTATTATACCTTCGGTACGTTTGCGCTTACTCCCCCTCCTTCCGACCATTACAACCGA 60
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      CTACCATTCTGACTTCAATAGGTTTTAGCTAAACAGTATTAACAGACTTTTATTTTTACT 120
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      CCCATTTTGTTGTCGCATCCTTTTTGCTCTTCTTCTAACTTTATCTTTAAATTTTTCTTC 180
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      TGCTCATTTTTAATGCTTAGAAACGAAAAAACAAAAAGAAAAAGGTCACAGTAATACCTC 240
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      TACTACACAACAATCACGCTTACACCTCCTGACGACCGCATGGTGATGACAAAATGTCGT 300
consensus_8531#1      --------------------------------------CATGGTGATGACAAAATGTCGT 22
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      TTTCATGACGCAGGAATGGAGGTGAGATATTTTATATCAGATTTTTTATTCTTTTTACAA 360
consensus_8531#1      TTTCATGACGCAGGAATGGAGGTGAGATATTTTATATCAGATTTTTTATTCTTTTTCCAA 82
consensus_8531#2      ------------------------------TTTCCATT--GTCTTTAGTTATTATTCGTA 28
                                                    ***  **    * ***  ** ** **   *

consensus_8531#0      GCAGTAAGGGATAAAACTATACAAAC-GGACACCCACC-AAGCCTTTTGTTCTCTTTTTT 418
consensus_8531#1      GCAGTAAGGGATAAAACTATACAAACCGGACACCCCCCCAAGCCTTTTGTTCTCTTTTTT 142
consensus_8531#2      TCGTTCTACTGTTATTCT-TACTATC---ATGTTT------GNCTTNCGTGTTCGTGGTA 78
                       *  *      * *  ** *** * *   *           * ***  **  ** *  * 

consensus_8531#0      TTTTTAAACAGCAATCGTTTTGCATCTGGCTTTAGCTTTTGACACGCTGGTGGAACTTTA 478
consensus_8531#1      TTTTTAAACAGCAATCGTTTTGCATCTGGCTTTAGCTTTTGACACGCTGGTGGAACTTTA 202
consensus_8531#2      TCTATTAGT-GTGCTCGTTCTTTATTCGCTTTTTCCCTTTTCTTCTCCCCCCCCCCCTTA 137
                      * * * *   *   ***** *  **  *  ***  * ***    * *        * ***

consensus_8531#0      ACATTGACAAAATT-GCGAATATGT----GTGTGTTGGATAGTGGCAGTAATTGTAACAG 533
consensus_8531#1      ACATTGACAAAATT-GCGAATATGT----GTGTGTTGGATAGTGGCAGTAATTGTAACAG 257
consensus_8531#2      -CTTAAATACATTTTGCTGATGCATTACCGTTTCTCTGCCTGCTCCACTTGCAGCCACGT 196
                       * *  * * * ** **  **   *    ** * *  *   *   ** *    *  **  

consensus_8531#0      ACAACAAAACAAACCCGATTACACACAGAGAGAAGGAGAGAAAGAGAGAACGAGAAAGAG 593
consensus_8531#1      ACAACAAAACAAACCCGATTACACACAGAGAGAAGGAGAGAAAGAGAGAACGAGAAAGAG 317
consensus_8531#2      GCAGCAACGTGCTTGCGCGTATAACTTAACTCTTCCCGTTTTCTGCGCAGTGCCACAGCG 256
                       ** ***        **  ** *     *        *          *  *  * ** *

consensus_8531#0      AAAAAAAAAGAAGTCCACATAACGAGGGATCGTCTCACACGTACCAACCAGGGCAGGAAG 653
consensus_8531#1      AAAAAAAAAGAAGTCCACATAACGAGGGATCGTCTCACACGTACCAACCAGGGCAGGAAG 377
consensus_8531#2      TCTTGACGGAACTTTGAAACATCTCGCTACCTGCTCTCACCT-CCATTTGTTTTT----- 310
                           *    *  *  * * * *  *  * *  *** *** * ***              

consensus_8531#0      TAGACGTTATTAACGATTTAAGTGGATAACA-GACACGGGGAGCC-GACGGCTCTATATA 711
consensus_8531#1      TAGACGTTATTAACGATTTAAGTGGATAACA-GACACGGGGAGCG-GACGGCTCTATATA 435
consensus_8531#2      TAAACGTAACAAAACAACAAAAAAAACAACAAGAAACATACATCACAATGGCTTGCCAGT 370
                      ** **** *  **  *   **    * **** ** **    * *   * ****    *  

consensus_8531#0      CAAAGTCACACATACACACTGCCTCAACG-GACAAATGGGGAACCACATCAAACAGAACT 770
consensus_8531#1      CAAAGTCACACATACACACTGCCTCAACG-GACAAATGGGGAACCACATCAAACAGAACT 494
consensus_8531#2      CGTGCACGCGCGCGCACACT--TGCGACGCGCCCGATGCGAAAATGCGT--------ATT 420
                      *     * * *   ******    * *** * *  *** * **   * *        * *

consensus_8531#0      GTTTTATTTTTACAAAATGTACACTTGGCGCATTGTGGAATTTCCACAAAAAAAAAACGA 830
consensus_8531#1      GTTTTATTTTTACAAAATGTACACTTGGCGCATTGTGGAATTTCCACAAAAAAAAAACGA 554
consensus_8531#2      GACTTTTGCGTGCAAAACATTCGCTCT-CTCTCTCTCTCTCTCCCTTTTATGATGCGC-A 478
                      *  ** *   * *****  * * **   * *  * *     * **    *  *    * *

consensus_8531#0      TACAAAAGAAGAAGTGTGGAATGATGCTGCTTCCTAATCCAACAGATTGCGCTTAATGTT 890
consensus_8531#1      TACAAAAGAAGAAGTGTGGAATGATGCTGCTTCCTAATCCAACAGATTGCGCTTAATGTT 614
consensus_8531#2      TTTTTATGCTTTCGTCCTNCGTGCCGATTCTTGG-------------------------- 512
                      *    * *     **      **  * * ***                            

consensus_8531#0      TAATGTTTTGCGCACCAGAAAACCATGCTAACGGGATCGGCCATGGCCATTCACTTTCCC 950
consensus_8531#1      TAATGTTTTGCGCACCAGAAAACCATGCTAACGCGGACG--CGTGGGCGGACGCGTGGGC 672
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      ATGCGTGTACCCAATGATAAGCAAATTTTCGTTGCAATTTCCGAGGATATCAATCACCTT 1010
consensus_8531#1      GG---------------------------------------------------------- 674
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      TTCTCGGGGTGTGAATGTTGAGCCACGCCAGATGAGATGGGCCACAAGGGCGAAATAATA 1070
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      GGGAAGGGAGAGAGAGAGACAAGAGAAACAGTAAAGCAAATCAAACTTAATCAAAGAGGT 1130
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      GGGCAAAGAGCATGATTGTGCGAGTAATCGATATCGGCCCACCCTCCCTTTCGATGGAGC 1190
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      GTTTTGTTCTTTCTCTCTTTCTCTCTTTTCCCCCACGTTGGCGTTTCCGGCAGTGGCAAT 1250
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      GGCCACCAATTTGCAACGTATTATGCGGCGCACGGTACTTTAACTATTTTTGGCATCTTT 1310
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      GTTAACCTTCAATTTCTGCAAGCAGTCTGCTCCAATCACTCACGCCAAAAGGTTCAATTC 1370
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      TCGACCCATCGATTTAAGGGCAAAAGCGAGAAGGACAGACAGGCAAGTACCGAAACAACA 1430
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      CTCTGGCATTTGAAAGTGAAAGAAACAGTGTATAATTTTGCAAAAAAAAAAGAACATTAA 1490
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      AAAAGCAGATAGTTATCTACACAAGTGGATGAAAGATTAGCACGTTTTGTATTAACTTTT 1550
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      TGTTTTTTTTCTTCTTCTTTTGCTTCATGTCCTTCTCGTGTGTTACGGTGTTTTCGTTAC 1610
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      ATATGTTTCATTGTTTTAGTTATTATTCGTATCGTTCTACTGTATTCTTACTATCATGGT 1670
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      TGGTTTGTGTTCGTGGTATCTATTAGTGTGTGTTTTCGGTTCTCTTTTTCCCTTTTCTTT 1730
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      CCCCCCTATTAAATACATTTTGCTGATGCATTACCGTTTCTCTGCTGCTCCACTTGCAGC 1790
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      CACGTGCAGCAACGTGCTTGCGCGTATAACTTAACTCTTCCCGTTTTCTGCGCAGTGCCA 1850
consensus_8531#1      ------------------------------------------------------------
consensus_8531#2      ------------------------------------------------------------
                                                                                  

consensus_8531#0      CAGCGTCTCGG 1861
consensus_8531#1      -----------
consensus_8531#2      -----------
                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)