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Anopheles gambiae
cluster # 8533 cluster # 8533       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8533#0 length = 1914 sequences # 6  
consensus_8533#1 length = 1161 sequences # 4  
consensus_8533#2 length = 708 sequences # 1  

consensusID : consensus_8533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1914
fasta sequence
                              [CCGGGTATATAAACGCATAACGGGGCAAGGAATGTACGGCTCGCAAGACACGTGGTCGCCCCTACAAAAAATCCTTTTTTTCGACAATTATTATCGAAATAAAAGGAAAGCAGTCTTGTGATGTGTGATCGGAGGGGGGAAGAGGTTAACAAACACATTACTTTCCGCGGACGACGAACGTCTG-TTTTTTGTAAATGTTTAGGAATTGTACGATAAATTAATTCTCGTATCAAAGGGCCACACCACCACACAAGTACGGGGCGCCTCCATGAAAGGAGGGAAAACGCACTAAGGCCCCAGATAGAAGAGGATGAGAGGTAGAGGTGATGTGTAGAGTGTTTAATTTCTGTTTCATCGTCGCCATTTTGTCACAAACTACAACCGTACATTGCCATCTTCAATGCGCAAACGTCATTTGTATAATGTACAGTGTATAAAGTTGCAAAAAAATTATACGCGAAAGGTAGAGTGCGCAGTGGAATGTGCACCACCAGCACCAGCGCCACCACCACCAACAGCAAAAACACAAAGAAAACACGGCAAAAAAACCAAATCTTGTTTGTATAATTAATAACCAATTTCGTTCGATAAGTGGGGTTGGTTTCACCTTTCCGCTTCTTAGTTAAGGGCCAAAAGCGTAATTAAATAGTAATAATTTTCTTCATTCTTTGTCAGTTACTTATGCTTTCTTTAATTATCTACTGAGTGTTTTGTTTTCAATTGTTCGTTTGTTTGTTCTTTTCTTTGTTGTGCTGTTTTTTTGTTTTGACTTTATCTTTTCTTTTTGTTTTGTCGTTGCTTGATTTTCTTCGTACTCAACGTTTCATTTCTCATTTTCTATATCTATTATACGAAGCAGTGCGAGCAGCGCGCGCAGAAGAGAGCCTGTGTGTGGTGTTTGTAGTAGTGTTTTAGTTTAGTTAGGTAGTTAGTAGTAGTGCTCCGGCAAAGAAGCAAACAAACAAACAGAAACGGCAGCGGCAAACAGCGGAACGAAACTCGTCGTTCATCGTTGTGTGTGTGGCACTGGTATTTGGTGCTTTGTAATGTATCTACGGACTATATTGTGTAGCT--CGAGTGTGTGTGTGTGTGAATGTT--TGTGTGTGTGTGGTGTGTATCACAACAGGATGGGATGTTTAAGGATAGACAATTACACAAACAAACAAAAAAGAAATCATAAGTGTGAACGTGCAGACAGTGCAACAGTAGATAATAGAGCAAAGAAAGAGAGTTGCAAAATAACACAAAAGGATNTAN-AAAAAAAACAAGTAAAACACACGCACCCTTGTTCAACAAACAAAAGGGGAAAGAAAGCAGGCACACTGGATGGTGAATGTTAAAAGTACTATTGT-AAAAAAGCAAAGATTTAAAAATGTGTTAGTGGCTACCCTCTTTTGGTTTGTGTAAGAAGAGTCACGGTGTTTGTGTGTGTGATTTGGTCCGAACTTTCACACACAATCAGATTGATCGTGATGATGTATAGATAACGGATAACTTTCCAAAGCGTGTTTCCCTCCTGCTGTGGAAAGCTTCAGAAAACTGTACACTTACACCGAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGCAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAATAAGAAGAAAGAAGAAGAAATAAGAAGAAAGAAGAAGAAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAATGAGAAAGAATAAAAAGAAGCAAGAAG]

[+] EMBL BM591170             [CCGGGTATATAAACGCATAACGGGGCAAGGAATGTACGGCTCGCAAGACACGTGGTCGCCCCTACAAAAAATCCTTTTTTTCGACAATTATTATCGAAATAAAAGGAAAGCAGTCTTGTGATGTGTGATCGGAGGGGGGAAGAGGTTAACAAACACATTACTTTCCGCGGACGACGAACGTCTGTTTTTTTGTAAATGTTTAGGAATTGTACGATAAATTAATTCTCGTATCAAAGGGCCACACCACCACACAAGTACGGGGCGCCTCCATGAAAGGAGGGAAAACGCACTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM613832             [                                                                                                   ccgAAGGAAAGCAGTCTTGTGATGTGTGATCGGAGGGGGGAAGAGGTTAACAAACACATTACTTTCCGCGTACGACGAGCGTCCG TTTTTTGTAAATGTTTAGGAATTGTAGGATAAATTAATTCGCGTATCAAAGAGCCACACCAGCACAGAAGTACGGGGCGCCTCCATCAAAGGAGCAAAAACGCATTAAGGCCCCAGATAGAAGAGGATGAGAGGTAGAGGTGATGTGTAGAGTGTTTAATTTCTGTTTCATCGTCGCCATTTTGTCACAAACTACAACCGTACATTGCCATCTTCAATGCGCAAACGTCATTTGTATAATGTACAGTGTATAAAGTTGCAAAAAAATTATACGCGAAAGGTAGAGTGCGCAGTGGAATGTGCACCACCAGCACCAGCGCCACCACCACCAACAGCAAAAACACAAAGAAAACACGGCAAAAAAACCAAATCTTGTTTGTATAATTAATAACCAATTTCGTTCGATAAGTGGGGTTGGTTTCACCTTTCCGCTTCTTAGTTAAGGGCCAAAAGCGTAATTAAATAGTAATAATTTTCTTCATTCTTTGTCAGTTACTTATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX625039             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             caTAATTAAATAGTAATAATTTTCTTCATTCTTTGTCAGTTACTTATGCTTTCTTTAATTATCTACTGAGTGTTTTGTTTTCAATTGTTCGTTTGTTTGTTCTTTTCTTTGTTGTGCTGTTTTTTTGTTTTGACTTTATCTTTTCTTTTTGTTTTGTCGTTGCTTGATTTTCTTCGTACTCAACGTTTCATTTCTTATTTTCTATATCTATTTTACGAAGCAGTGCGAGCAGCGCGCGCAGAAGGGAGCCTGTGTGTAGTGTTTGTAGTAGTGTTTTAGTTTAGTTAGGTAGTTAGTAGTAGTGCTCCGGCAAAGAAGCAAACAAACAAACAGAAACGGCAGCGGCAAACAGCGGAACGAAACTCGTCGTTCATCGTTGTGTGTGTGGCACTGGTATTTGGTGCTTTGTAATGTATCTACGGACTATATTGTGTAGCT  CGAGTGTGTGTGTGTGTGAATGTT  TGTGTGTGTGTGGTGTGTATCACAACAGGATGGGATGTTTAAGGATAGACAATTACACAAACAAACAAAAAAGAAATCATAAGTGTGAACGTGCAGACAGTGCAACAGTAGATAATAGAGCAAAGAAAGAGAGTTGCAAAATAACACAAAAGGAT      AAAAAAACAAGTAAAACACACGCACCCTTGTTCAATAAACAAAAGGGGAAAGAAAGCAGGCACACTGGATGGTGAATGTTAAAAGTACTATTGT AAAAAAGCAAAGATTTAAAAATGTGTTAGTGGCTACCCTCTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF541563             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTTTTCTTTGTTGTGCTG TTTTTTGTTTTGACCTTATCTTTTCTTTTTGTTTTGTCGTTGCTTGATTTTCTTCGTAGTCAACGTTTCATTTCTCATTTTCTATATCTATTATACGAAGCAGAGCGAGCAGCGCGCGCAGAAGAGAGCCTGTGTGTGGTGTTTGTAGTAGTGTTTTAGTTTAGTTAGGTAGTTAGTAGTAGTGCTCCGGCAAAGAAGCAAACAAACAAACAGAAACGGCAGCGGCAAACAGCGGAACGAAACTCGTCGTTCATCGTTGTGTGTGTGGCACCGGTATTTGGTGCTTTGTAATGTATCTACGGACTATATTGTGTAGCT  CGCGTGTGTGTGTGTGTGAATGTG  TGTGTGTGTGTGGTGTGTATCACAACAGGATGGGATGTNTAANGATAGACAATTACACAAACAAACAAAAAAGAAATCATAAGTGTGAACGTGCAGACAGTGCAACAGTAGATAATAGAGCAAAGAAAGAGAGTCGCAAAATAACACNANAGGATNTANAAAAAAAAACNAGTNAAACACACGCNCCCTGNTTCAACAAACnnaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM586037             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccgCAACGTTTCATTTCTCATTTTATATTTCTATTATACGAAGCAGTGCGAGCAGCGCGCGCAGAAGAGAGCCTGTGTGTGGTGTTTGTAGTAGTGTTTTAGTTTAGTTAGGTAGTTAGTAGTAGTGCTCCGGCAAAGAAGCAAACAAACAAACAGAAACGGCAGCGGCAAACAGCGGAACGAAACTCGTCGTTCATCGTTGTGTGTGTGGCACTGGTATTTGGTGCTTTGTAATGTATCTACGGACTATATTGTGTAGCTCGCGTGTGTGTGTGTGTGTGAATGTTTGTGTGTGTGTGTGGTGTGTATCACAACAGGATGGGATGTTTAGGGATAGACAATTACACAAACAAACAAAAAAGAAATCATAAGTGTGAACGTGCAGACAGTGCAACAGTAGATAATAGAGCAAAGAAAGAGAGTTGCAAAATAACACAAAAGGATTAAA AAAAAAAACAAGTAAAACACACGCACCCTTGTTCAACAAACAAAAGGGGAAAGAAAGCAGGCACACTGGATGGTGAATGTTAAAAGTACTATTGTAAAAAAAGCAAAGATTTAAAAATGTGTTAGTGGCTCCCCTCTTTTGGTTTGTGTAAGAAGAGTCACGGTGTTTGTGTGTGTGATTTGGTCCGAACTTTCACACACAATCAGATTGATCGTGATGATGTATAGATAACGGATAACTTTCCAAAGCGTGTTTCC                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM652574             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccgGGTTTGTGTAAGAAGAGTCACGGTGTTTGTGTGTGTGATTTGGTCCGAACTTTCACACACAATCAGATTGATCGTGATGATGTATAGATAACGGATAACTTTCAAAAGCGTGTTTCCCTCCTGCTGTGGAAAGCTTCAGAAAACTGTACACTTACACCGAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGCAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAATAAGAAGAAAGAAGAAGAAATAAGAAGAAAGAAGAAGAAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAATGAGAAAGAATAAAAAGAAGCAAGAAG]


>consensus_8533#0 CCGGGTATATAAACGCATAACGGGGCAAGGAATGTACGGCTCGCAAGACACGTGGTCGCC CCTACAAAAAATCCTTTTTTTCGACAATTATTATCGAAATAAAAGGAAAGCAGTCTTGTG ATGTGTGATCGGAGGGGGGAAGAGGTTAACAAACACATTACTTTCCGCGGACGACGAACG TCTGTTTTTTGTAAATGTTTAGGAATTGTACGATAAATTAATTCTCGTATCAAAGGGCCA CACCACCACACAAGTACGGGGCGCCTCCATGAAAGGAGGGAAAACGCACTAAGGCCCCAG ATAGAAGAGGATGAGAGGTAGAGGTGATGTGTAGAGTGTTTAATTTCTGTTTCATCGTCG CCATTTTGTCACAAACTACAACCGTACATTGCCATCTTCAATGCGCAAACGTCATTTGTA TAATGTACAGTGTATAAAGTTGCAAAAAAATTATACGCGAAAGGTAGAGTGCGCAGTGGA ATGTGCACCACCAGCACCAGCGCCACCACCACCAACAGCAAAAACACAAAGAAAACACGG CAAAAAAACCAAATCTTGTTTGTATAATTAATAACCAATTTCGTTCGATAAGTGGGGTTG GTTTCACCTTTCCGCTTCTTAGTTAAGGGCCAAAAGCGTAATTAAATAGTAATAATTTTC TTCATTCTTTGTCAGTTACTTATGCTTTCTTTAATTATCTACTGAGTGTTTTGTTTTCAA TTGTTCGTTTGTTTGTTCTTTTCTTTGTTGTGCTGTTTTTTTGTTTTGACTTTATCTTTT CTTTTTGTTTTGTCGTTGCTTGATTTTCTTCGTACTCAACGTTTCATTTCTCATTTTCTA TATCTATTATACGAAGCAGTGCGAGCAGCGCGCGCAGAAGAGAGCCTGTGTGTGGTGTTT GTAGTAGTGTTTTAGTTTAGTTAGGTAGTTAGTAGTAGTGCTCCGGCAAAGAAGCAAACA AACAAACAGAAACGGCAGCGGCAAACAGCGGAACGAAACTCGTCGTTCATCGTTGTGTGT GTGGCACTGGTATTTGGTGCTTTGTAATGTATCTACGGACTATATTGTGTAGCTCGAGTG TGTGTGTGTGTGAATGTTTGTGTGTGTGTGGTGTGTATCACAACAGGATGGGATGTTTAA GGATAGACAATTACACAAACAAACAAAAAAGAAATCATAAGTGTGAACGTGCAGACAGTG CAACAGTAGATAATAGAGCAAAGAAAGAGAGTTGCAAAATAACACAAAAGGATNTANAAA AAAAACAAGTAAAACACACGCACCCTTGTTCAACAAACAAAAGGGGAAAGAAAGCAGGCA CACTGGATGGTGAATGTTAAAAGTACTATTGTAAAAAAGCAAAGATTTAAAAATGTGTTA GTGGCTACCCTCTTTTGGTTTGTGTAAGAAGAGTCACGGTGTTTGTGTGTGTGATTTGGT CCGAACTTTCACACACAATCAGATTGATCGTGATGATGTATAGATAACGGATAACTTTCC AAAGCGTGTTTCCCTCCTGCTGTGGAAAGCTTCAGAAAACTGTACACTTACACCGAGAAG AAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAG AAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGCAAGAAGAAGAAAGAAGAAGAAA GAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAA GAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAA GAAGAAGAAAGAAGAAATAAGAAGAAAGAAGAAGAAATAAGAAGAAAGAAGAAGAAAGAA GAAAGAAGAAGAAAGAAGAAGAAAGAATGAGAAAGAATAAAAAGAAGCAAGAAG



consensusID : consensus_8533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1161
fasta sequence
                              [CCGCGGACGCGTGGGGAAATGTGTTCGAAATAAAACAGAAACAAACAAAAAACACTGAAACAATGATTTGATGAACTAGTAAATAAGGAAGAAGTGTAGTAGTAAAAAGAAAACACACACAACCACATACACAACAAACAGAAAAGATGTGAAAAAGTCTATTAGTAAAAGAAAAGAAAAGAATACAAGTAGAGAGAGCCCAGCCGTAGGTGCGCGAAATTCGGTTTAAAAAGAGAGATAAAAA-AAACAGAGAGAAAAGAAGAAAAACTTAACTATATATATATTATATACACTAGGTACTTATATATGAATATATATATTATATACAACAGAGGCGAGAAAAGAGGGCGGAGAAGAAGAAAAACTGTACACGAGAAGAAAGAGGAGTAAAGAAAAGAAGCGAAGAAGGGTCCCTATTCCGGCTTTTGTTTCCCCCGTTAATGTTGTGTCCCCTCTATGGCAGCTCTCGGTCGGGTCGGGTGTATTCCCGTTGTGTTTTCCCCTCTTGGCATTAAGATGTCCTTACCTTACCTCTCGCTGGTCAGCAGTAAAGTCAGCAGCAGCAGCGCCATTAGTTGATTTGTTATCACAAATCAGTTGTCCCCACACAAATAATGCTTTCTTTATTTGGTTGTTCCTTAAAATAAGGGAAGAAAGAGAT---AAAAAAACAGTTCAATAATCCTGAAAAAAGCAAAGACACAACATAACAAAAGCGAACAATGTCTCATCTCATCAATGCTGCGGCAACAAGGCGACTATCACCGAGCAAAATTCAGGAAACCAGGTTAATGTTCCCAAAGTTTTATGTTGCGTCTTTTTGGGCTATTTATGGCCCCCAACGCTCCCTTTTGTGTCCTTTGGCAGCTATTGTGAACTTTTCGAAAGCCCAAATCCTTTGGGCCTCAATTGCCTTCACCTTCTTATCCTTAGTACATCAGTTTGCTCATCATCATGTGCCAACGGGGGGAAAACACTGGGAAATCGTACCCCGCCTCCCCTCAATACCTTCTAATTTCCTTTATCATTCACTCTCCCTCCCCGATAAAGATGATTCTTTGCTCCTCCTTTTTCTTCTACACACCAACACTTCAAAAAACTTGC-TTGTATGGGTTACTACTATTATTTGATTTTACTTTGAAATTTGATAAGAATAAAACCGTT]

[+] EMBL BM636187             [CCGCGGACGCGTGGGGAAATGTGTTCGAAATAAAACAGAAACAAACAAAAAACACTGAAACAATGATTTGATGAACTAGTAAATAAGGAAGAAGTGTAGTAGTAAAAAGAAAACACACACAACCACATACACAACAAACAGAAAAGATGTGAAAAAGTCTATTAGTAAAAGAAAAGAAAAGAATACAAGTAGAGAGAGCCCAGCCGTAGGTGCGCGAAATTCGGTTTAAAAAGAGAGATAAAAA AAACAGAGAGAAAAGAAGAAAAACTTAACTATATATATATTATATACACTAGGTACTTATATATGAATATATATATTATATACAACAGAGGCGAGAAAAGAGGGCGGAGAAGAAGAAAAACTGTACACGAGAAGAAAGAGGAGTAAAGAAAAGAAGCGAAGAAGGGTCCCTATTCCGGCTTTTGTTTCCCCCGTTAATGTTGTGTCCCCTCTATGGCAGCTCTCGGTCGGGTCGGGTGTGCTCCCGTTGTGTTTTCCCCTCTTGGCATTAAGATTTCCTTACCTTACCTCTCGCTGGTCAGCAGTAAAGTCAACAGCAGCAGCGCCATTAGTTGATTTGTTATCACAAATCAGTTGTCTCCACATAAATAATGCTTTCTTTATTTGGTTGTTCCTTAAAATAAGGGAAGAAAGAGATAAAAAAAAAACAGTTCAATAATCCTGGAAAAAGCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM619803             [                                                                                           AAGTGTAGTAGTAAAAAGAAAACACACACAACCACATACACAACAAACAGAAAAGATGTGAAAAAGTCTATTAGTAAAA AAAAGAAAAGAAAACAAGTAGAGAGAGCCTAGCCGTAGGTGCGCGAAATTCGGTTTAAAAAGAGAGATAAAAAGAAACAGAGAGAAAAGAAGAAAAACTTAACTATATATATATTATATACACTAGGTACTTATATATGAATATATATATTATATACAACAGAGGCGAGAAAAGAGGGCGGAGAAGAAGAAAAACTGTACACGAGAAGAAAGAGGAGTGAAGAAAAGAAGCGAAGAAGGGTCCCTATTCTGGCTTTTGTTTCCCCCGTTAATGTTGTGTCCCCTCTATGGCAGCTCTCGGTCGGGTCGGGTGTATTCCCGTTGTG TTTCCCCTCTTGGCATTAAGATGTTCTTACCTTACCTCTCGCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX627443             [                                                                                                                                                                                                                                                                                                                                                                                                                                    CGGCTTTTGTTTCCCCCGTTAATGTTGTGTCCCCTCTATGGCAGCTCTCGGTCGGGTCGGGTGTATTCCCGTTGTGTTTTCCCCTCTTGGCACTAAGATGTCCTTACCTTACCTCTCGCTGGTCAGCAGTAAAGTCAGCAGCAGCAGCGCCATTAGTTGATTTGTTATCACAAATCAGTTGTCCCCACACAAATAATGCTTTCTTTATTTGGTTGTTCCTTAAAATAAGGGAAGAAAGAGAT   AAAAAAACAGTTCAATAATCCTGAAAAAAGCAAAGACACAACATAACAAAAGCGAACAATGTCTCATCTCATCAATGCTGCGGCAACAAGGCGACTATCACCGAGCAAAATTCAGGAAACCAGGTTAATGTTCCCAAAGTTTTATGTTGCGTCTTTTTGGGCTATTTATGGCCCCCAACGCTCCCTTTTGTGTCCTTTGGCAGCTATTGTGAACTTTTCGAAAGCCCAAATCCTTTGGGCCTCAATTGCCTTCACCTTCTTATCCTTAGTACATCAGTTTGCTCATCATCATGTGCCAACGGGGGGAAAACACTGGGAAATCGTACCCCGCCTCCCCTCAATACCTTCTAATTTCCTTTATCATTCACTCTCCCTCCCCGATAAAGATGATTCTTTGCTCCTCCTTTTTCTTCTACACACCAACACTTCAAAAAACTTGC TTGTATGGGTTACTACTATTATTTGATTTTACTTTGAAATTTG                 ]
[+] EMBL BX622955             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGTATTCCCGTTGTGTTTTCCCCTCTTGGCACTAAGATGTCCTTACCTTACCTCTCGCTGGTCAGCAGTAAAGTCAGCAGCAGCAGCGCCATTAGTTGATTTGTTATCACAAATCAGTTGTCCCCACACAAATAATGCTTTCTTTATTTGGTTGTTCCTTAAAATAAGGGAAGAAAGAGAT   AAAAAAACAGTTCAATAATCCTGAAAAAAGCAAAGACACAACATAACAAAAGCGAACAATGTCTCATCTCATCAATGCTGCGGCAACAAGGCGACTATCACCGAGCAAAATTCAGGAAACCAGGTTAATGTTCCCAAAGTTTTATGTTGCGTCTTTTTGGGCTATTTATGGCCCCCAACGCTCCCTTTTGTGTCCTTTGGCAGCTATTGTGAACTTTTCGAAAGCCCAAATCCTTTGGGCCTCAATTGCCTTCACCTTCTTATCCTTAGTACATCAGTTTGCTCATCATCATGTGCCAACGGGGGGAAAACACTGGGAAATCGTACCCCGCCTCCCCTCAATACCTTCTAATTTCCTTTATCATTCACTCTCCCTCCCCGATAAAGATGATTCTTTGCTCCTCCTTTTTCTTCTACACACCAACACTTCAAAAAACTTGCTTTGTATGGTTTACTACTATTATTTGATTTTACTTTGAAATTTGATAAGAATAAAACCGTT]


>consensus_8533#1 CCGCGGACGCGTGGGGAAATGTGTTCGAAATAAAACAGAAACAAACAAAAAACACTGAAA CAATGATTTGATGAACTAGTAAATAAGGAAGAAGTGTAGTAGTAAAAAGAAAACACACAC AACCACATACACAACAAACAGAAAAGATGTGAAAAAGTCTATTAGTAAAAGAAAAGAAAA GAATACAAGTAGAGAGAGCCCAGCCGTAGGTGCGCGAAATTCGGTTTAAAAAGAGAGATA AAAAAAACAGAGAGAAAAGAAGAAAAACTTAACTATATATATATTATATACACTAGGTAC TTATATATGAATATATATATTATATACAACAGAGGCGAGAAAAGAGGGCGGAGAAGAAGA AAAACTGTACACGAGAAGAAAGAGGAGTAAAGAAAAGAAGCGAAGAAGGGTCCCTATTCC GGCTTTTGTTTCCCCCGTTAATGTTGTGTCCCCTCTATGGCAGCTCTCGGTCGGGTCGGG TGTATTCCCGTTGTGTTTTCCCCTCTTGGCATTAAGATGTCCTTACCTTACCTCTCGCTG GTCAGCAGTAAAGTCAGCAGCAGCAGCGCCATTAGTTGATTTGTTATCACAAATCAGTTG TCCCCACACAAATAATGCTTTCTTTATTTGGTTGTTCCTTAAAATAAGGGAAGAAAGAGA TAAAAAAACAGTTCAATAATCCTGAAAAAAGCAAAGACACAACATAACAAAAGCGAACAA TGTCTCATCTCATCAATGCTGCGGCAACAAGGCGACTATCACCGAGCAAAATTCAGGAAA CCAGGTTAATGTTCCCAAAGTTTTATGTTGCGTCTTTTTGGGCTATTTATGGCCCCCAAC GCTCCCTTTTGTGTCCTTTGGCAGCTATTGTGAACTTTTCGAAAGCCCAAATCCTTTGGG CCTCAATTGCCTTCACCTTCTTATCCTTAGTACATCAGTTTGCTCATCATCATGTGCCAA CGGGGGGAAAACACTGGGAAATCGTACCCCGCCTCCCCTCAATACCTTCTAATTTCCTTT ATCATTCACTCTCCCTCCCCGATAAAGATGATTCTTTGCTCCTCCTTTTTCTTCTACACA CCAACACTTCAAAAAACTTGCTTGTATGGGTTACTACTATTATTTGATTTTACTTTGAAA TTTGATAAGAATAAAACCGTT



consensusID : consensus_8533#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence
                              [CCGTTTCACACACAATCAGATTGATCGTGATGATGTATAGATAACGGATAACTTTCAAAAGCGTGTTTCCCTCCTGCTGTGGAAAGCTTCAGAAAAACTGTACACTTACACCGATAAGAAGAAGAAGAAGAAGAAGAAGAATGAATAAAAAAACACAAAACAAACAAAAGCGGTGAAAGAGCGGTTTGTGGAAAATACTAAATGTGCCAGTTTATAGGAAAAATGTAAAATGAAAAAACGAAATGGAGGAGAGCAACCAAAAACAAACAAAAAAATCGAAGAGAAGAAATGTGTTCGAAATAAAACAGAAACAAACAAAAAACACTGAAACAATGATTTGATGAACTAGTAAATAAGGAAGAAGTGTAGTAGTAAAAAGAAAACACACACAACCACATACACAACAAACAGAAAAGATGTGAAAAAGTCTATTAGTAAAAGAAAAGAAAAGAATACAAGTAGAGAGAGCCCAGCCGTAGGTGCGCGAAATTCGGTTTAAAAAGAGAGATAAAAAAAACAGAGAGAAAAGAAGAAAAACTTAACTATATATATATTATATACACTAGGTACTTATATATGAATATATATATTATATACAACCGGAGGCGAGAAAAGAGGGCGGAGAAGAAGAAAAACTGTACACGAGAAGAAAGAGGAGTAAAGAAAAGAAGCGAAGAAGGGTCCCTATTCCGGCTTTTGTTTCCCCCG]

[+] EMBL BM636313             [CCGTTTCACACACAATCAGATTGATCGTGATGATGTATAGATAACGGATAACTTTCAAAAGCGTGTTTCCCTCCTGCTGTGGAAAGCTTCAGAAAAACTGTACACTTACACCGATAAGAAGAAGAAGAAGAAGAAGAAGAATGAATAAAAAAACACAAAACAAACAAAAGCGGTGAAAGAGCGGTTTGTGGAAAATACTAAATGTGCCAGTTTATAGGAAAAATGTAAAATGAAAAAACGAAATGGAGGAGAGCAACCAAAAACAAACAAAAAAATCGAAGAGAAGAAATGTGTTCGAAATAAAACAGAAACAAACAAAAAACACTGAAACAATGATTTGATGAACTAGTAAATAAGGAAGAAGTGTAGTAGTAAAAAGAAAACACACACAACCACATACACAACAAACAGAAAAGATGTGAAAAAGTCTATTAGTAAAAGAAAAGAAAAGAATACAAGTAGAGAGAGCCCAGCCGTAGGTGCGCGAAATTCGGTTTAAAAAGAGAGATAAAAAAAACAGAGAGAAAAGAAGAAAAACTTAACTATATATATATTATATACACTAGGTACTTATATATGAATATATATATTATATACAACCGGAGGCGAGAAAAGAGGGCGGAGAAGAAGAAAAACTGTACACGAGAAGAAAGAGGAGTAAAGAAAAGAAGCGAAGAAGGGTCCCTATTCCGGCTTTTGTTTCCCCCG]


>consensus_8533#2 CCGTTTCACACACAATCAGATTGATCGTGATGATGTATAGATAACGGATAACTTTCAAAA GCGTGTTTCCCTCCTGCTGTGGAAAGCTTCAGAAAAACTGTACACTTACACCGATAAGAA GAAGAAGAAGAAGAAGAAGAATGAATAAAAAAACACAAAACAAACAAAAGCGGTGAAAGA GCGGTTTGTGGAAAATACTAAATGTGCCAGTTTATAGGAAAAATGTAAAATGAAAAAACG AAATGGAGGAGAGCAACCAAAAACAAACAAAAAAATCGAAGAGAAGAAATGTGTTCGAAA TAAAACAGAAACAAACAAAAAACACTGAAACAATGATTTGATGAACTAGTAAATAAGGAA GAAGTGTAGTAGTAAAAAGAAAACACACACAACCACATACACAACAAACAGAAAAGATGT GAAAAAGTCTATTAGTAAAAGAAAAGAAAAGAATACAAGTAGAGAGAGCCCAGCCGTAGG TGCGCGAAATTCGGTTTAAAAAGAGAGATAAAAAAAACAGAGAGAAAAGAAGAAAAACTT AACTATATATATATTATATACACTAGGTACTTATATATGAATATATATATTATATACAAC CGGAGGCGAGAAAAGAGGGCGGAGAAGAAGAAAAACTGTACACGAGAAGAAAGAGGAGTA AAGAAAAGAAGCGAAGAAGGGTCCCTATTCCGGCTTTTGTTTCCCCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      CCGTTTCACACACAATCAGATTGATCGTGATGATGTATAGATAACGGATAACTTTCAAAA 60
consensus_8533#0      -------CCGGGTATATAAACGCATAACGGGGCAAGGAATGTACGGCTCGCAAGACACGT 53
                                                                                  

consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      GCGTGTTTCCCTCCTGCTGTGGAAAGCTTCAGAAAAACTGTACACTTACACCGATAAGAA 120
consensus_8533#0      GGTCGCCCCTACAAAAAATCCTTTTTTTCGACAATTATTATCGAAATAAAAGGAAAGCAG 113
                                                                                  

consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      GAAGAAGAAGAAGAAGAAGAATGAATAAAAAAACACAAAACAAACAAAAGCGGTGAAAGA 180
consensus_8533#0      TCTTGTGATGTGTGATCGGAGGGGGGAAGAGGTTAACAAACACATTACTTTCCGCGGACG 173
                                                                                  

consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      GCGGTTTGTGGAAAATACTAAATGTGCCAGTTTATAGGAAAAATGTAAAATGAAAAAACG 240
consensus_8533#0      ACGAACGTCTGTTTTTTGTAAATGTTTAGGAATTGTACGATAAATTAATTCTCGTATCAA 233
                                                                                  

consensus_8533#1      ---------------------------CCGCGGACGCGTGGGGA---AATGTGTTCGAAA 30
consensus_8533#2      AAATGGAGGAGAGCAACCAAAAACAAACAAAAAAATCGAAGAGAAGAAATGTGTTCGAAA 300
consensus_8533#0      AGGGCCACACCACCACACAAGTACGGGGCGCCTCCATGAAAGGAGGGAAAACGCACTAAG 293
                                                           *    **   **   *  * ** 

consensus_8533#1      ---TAAAACAGAAACAAACAAAAAACACTGAAACAATGATTTGATGAACTAGTAAAT--- 84
consensus_8533#2      ---TAAAACAGAAACAAACAAAAAACACTGAAACAATGATTTGATGAACTAGTAAAT--- 354
consensus_8533#0      GCCCCAGATAGAAGAGGATGAGAGGTA--GAGGTGATGTGTAGAGTGTTTAATTTCTGTT 351
                           * * ****    *  * *   *  **    ***  * **     ** *   *   

consensus_8533#1      --AAGGAAGAAGTGTAGTAGTAAAAAGAAAACACACACAACCACATACACAACAAACAGA 142
consensus_8533#2      --AAGGAAGAAGTGTAGTAGTAAAAAGAAAACACACACAACCACATACACAACAAACAGA 412
consensus_8533#0      TCATCGTCGCCATTTTGTCACAAACTACAACCGTACATTGCCATCTTCAATGCGCAAACG 411
                        *  *  *   * * **   ***    ** *  ***   ***  * **   *  * *  

consensus_8533#1      AAAGATGTGAAAAAGTCTATTAGTAAAAGAA-AAGAAAAGAATACAAGTAG---AGAGAG 198
consensus_8533#2      AAAGATGTGAAAAAGTCTATTAGTAAAAGAA-AAGAAAAGAATACAAGTAG---AGAGAG 468
consensus_8533#0      TCATTTGTATAATGTACAGTGTATAAAGTTGCAAAAAAATTATACGCGAAAGGTAGAGTG 471
                        *  ***  **    *  *   ****     ** ****  ****  * *    **** *

consensus_8533#1      CCCAGCCGTAGGTGCGCGAA----ATTCGGTTTAAAAAGAGAGATAAAAAAAACAGAGAG 254
consensus_8533#2      CCCAGCCGTAGGTGCGCGAA----ATTCGGTTTAAAAAGAGAGATAAAAAAAACAGAGAG 524
consensus_8533#0      CGCAGTGGAATGTGCACCACCAGCACCAGCGCCACCACCACCAACAGCAAAAACACAAAG 531
                      * ***  * * **** * *     *   *    *  *  *   * *  ******* * **

consensus_8533#1      AAAAGA----AGAAAAACTTAACTATATATATATTATATACACTAGGTACTTATATATGA 310
consensus_8533#2      AAAAGA----AGAAAAACTTAACTATATATATATTATATACACTAGGTACTTATATATGA 580
consensus_8533#0      AAAACACGGCAAAAAAACCAAATCTTGTTTGTATAATTAATAACCAATTTCGTTCGATAA 591
                      **** *    * ******  **   * * * *** **  * *     *     *  ** *

consensus_8533#1      ATATATATATTATATACAAC-AGAGGCGAGAAAAGAGGGCGGAGAAGAAGAAAAACTGTA 369
consensus_8533#2      ATATATATATTATATACAACCGGAGGCGAGAAAAGAGGGCGGAGAAGAAGAAAAACTGTA 640
consensus_8533#0      GTGGGGTTGGTTTCACCTTTCCGCTTCTTAGTTAAGGGCCAAAAGCGTAATTAAATAGTA 651
                       *     *  * *   *     *   *      *  ** *  *   * *   ***  ***

consensus_8533#1      C--ACGAGAAGAAAGAGGAGTAAAGAAAAGAAGCGAAGAAGGGTC-CCTATTCCGGCTTT 426
consensus_8533#2      C--ACGAGAAGAAAGAGGAGTAAAGAAAAGAAGCGAAGAAGGGTC-CCTATTCCGGCTTT 697
consensus_8533#0      ATAATTTTCTTCATTCTTTGTCAGTTACTTATGCTTTCTTTAATTATCTACTGAGTGTTT 711
                         *        *      ** *   *   * **         *   *** *  *  ***

consensus_8533#1      TGTTTCC-----CCCGTTAATGTTGTGTCCCCTCTATGGCAGCTCTCGGTCGGGTCGGGT 481
consensus_8533#2      TGTTTCC-----CCCG-------------------------------------------- 708
consensus_8533#0      TGTTTTCAATTGTTCGTTTGTTTGTTCTTTTCTTTGTTGTGCTGTTTTTTTGTTTTGACT 771
                      ***** *       **                                            

consensus_8533#1      GTATTCCCGTTGTGTTTTCCCCTCTTGGCATTAAGATGTCCTTACCTTACCTCTCGCTGG 541
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      TTATCTTTTCTTT-TTGTTTTGTCGTTGCTTGATTTTCTTCGTACTCAACGTTTCATTTC 830
                                                                                  

consensus_8533#1      TCAGCAGTAAAGTCAGCAGCA-GCAGCGCCATTAGTTG-ATTTGTTATCACAAATCAGT- 598
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      TCATTTTCTATATCTATTATACGAAGCAGTGCGAGCAGCGCGCGCAGAAGAGAGCCTGTG 890
                                                                                  

consensus_8533#1      TGTCCCCACACAAATAATGCTTT--CTTTATTTGGTTGTTCCTTAAAATAAGGGAAGAAA 656
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      TGTGGTGTTTGTAGTAGTGTTTTAGTTTAGTTAGGTAGTTAGTAGTAGTGCTCCGGCAAA 950
                                                                                  

consensus_8533#1      GAGATAAAAAAACAGTTCAATAATCCTGAAAAAAGCAAAGACACAACATAACAAAAGCGA 716
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      GAAGCAAACAAACAAACAGAAACGGCAGCGGCAAACAGCGGAACGAAACT-CGTCGTTCA 1009
                                                                                  

consensus_8533#1      ACAATGTCT-CATCTCATCAATGCTGCGGCAACAAGGCGACTATCACCGAGCAAAATTCA 775
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      TCGTTGTGTGTGTGGCACTGGTATT-TGGTGCTTTGTAATGTATCTACGGACTATATTGT 1068
                                                                                  

consensus_8533#1      GGAAACCAGGTTAATGTTCCCAAAGTTTTATGT-TGCGTCTTTTTGGGCTATTTATGGCC 834
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      GTAGCTCGAGTGTGTGTGTGTGTGAATGTTTGTGTGTGTGTGGTGTGTATCACAACAGGA 1128
                                                                                  

consensus_8533#1      CCCAACGCTCCCTTTTGTGTCCTTTGGCAGCTA--TTGTGAACTTTTCGAAAGCCCAAAT 892
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      TGGGATGTTTAAGGATAGACAATTACACAAACAAACAAAAAAGAAATCATAAGTGTGAAC 1188
                                                                                  

consensus_8533#1      CCTTTGGGCCTCAATTGCCTTCACCTTCTTATCCTTAGTACATCAGTTTGCTCATCATCA 952
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      GTGCAGA----CAGTGCAACAGTAGATAATAGAGCAAAGAAAGAGAGTTGCAAAATAACA 1244
                                                                                  

consensus_8533#1      TGTGCCAACGGGGGGAAAACACTGGGAAATCGTACCCCGCCTCCCCTCAATACCTTCTAA 1012
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      CAAAAGGATNTANAAAAAAAACAAGTAAAACACACGCACCCTTGTTCAACAAACAAAAGG 1304
                                                                                  

consensus_8533#1      TTTCCTTTATCATTCACTCTCCCTCCCCGATAAAGATGATTCT-TTGCTCCTCCTTTTTC 1071
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      GGAAAGAAAGCAGGCACACTGGATGGTGAATGTTAAAAGTACTATTGTAAAAAAGCAAAG 1364
                                                                                  

consensus_8533#1      TTCTACACACCAACACTTCAAAAAACTTGCTTG-TATGGGTTACTACTATTATTTGATTT 1130
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      ATTTAAAAATGTGTTAGTGGCTACCCTCTTTTGGTTTGTGTAAGAAGAGTCACGGTGTTT 1424
                                                                                  

consensus_8533#1      TACTTTGAAATTTGATAAGAATAAAACCGTT----------------------------- 1161
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      GTGTGTGTGATTTGGTCCGAACTTTCACACACAATCAGATTGATCGTGATGATGTATAGA 1484
                                                                                  

consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      TAACGGATAACTTTCCAAAGCGTGTTTCCCTCCTGCTGTGGAAAGCTTCAGAAAACTGTA 1544
                                                                                  

consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      CACTTACACCGAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAG 1604
                                                                                  

consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      AAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGCAAGAAG 1664
                                                                                  

consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      AAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAG 1724
                                                                                  

consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      AAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAG 1784
                                                                                  

consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      AAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAATAAGAAGAAAGAAGAAGAAATAAGAAG 1844
                                                                                  

consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
consensus_8533#0      AAAGAAGAAGAAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAATGAGAAAGAATAAAAAG 1904
                                                                                  

consensus_8533#1      ----------
consensus_8533#2      ----------
consensus_8533#0      AAGCAAGAAG 1914
                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)