These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1192 fasta sequence [CCGATTGAAAAGCAGTCGAGAGTGTTCGTCACCGTTGCTGCCGTCGCCTGTCGCCATCGTCGCCACCGTCGTCGTGGTCGTCGTCGTTGTGTCGTATTTTTGGCCTTAAACCTCCCCCAGCCGTCCCCCTCACAAGCTACCTGCCACACAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAA-CGACATTA---AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCC-GGGTGTATC-GGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTCCCGCGCCGTGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGGCCACTTTGGTGACAATCTCACC-ACCCACTTCCTGTCGTCGCTAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTGCGATGAACGCGAAGCCGGGCGAGTTCAGCGG-CGTCTGGGACATTGTGCGCTTTACGGCCCGGCTCGGCCCGCTCGG-NTTCTTCAAGGGCTACGTGCCGGCGTTCGTGCGCCTCGGGCCGCACACCATCCTGACGTTCGTC-TTCCTGGAGCAG-CTGC--GCATGAACTTTGGCTACCTGAAGCCGTAAGCGCGGTTCGGTTCCCCCTTAGGCTGTGTGTTACGGGCCATGGAAAAACAACCATGCCACAACCATCACACACATACCCACTCACCTCTACTATCCACTAACGATTTACCGGTTACGGGTTACCGTGAGCTTTTAGAGCAATTTTGACACATTCCACTAACGAACAAGCATCAGTCACGAGTCA] [+] EMBL BM638499 [CCGATTGAAAAGCAGTCGAGAGTGTTCGTCACCGTTGCTGCCGTCGCCTGTCGCCATCGTCGCCACCGTCGTCGTGGTCGTCGTCGTTGTGTCGTATTTTTGGCCTTAAACCTCCCCCAGCCGTTCCCCTCACAAGCTACCTGCCACACAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGACCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTCCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAA CGACATTA AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCC GGGTGTATC GGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTC ] [+] EMBL BM648802 [ cCGCCTGTCGCCATCGTCGCCACCGTCGTCGTGGTCGTCGTCGCTGTGTCGTATTTTTGGCCTTAAGCCTCCCCCAGCCGTCCCCCTCACAAGCTACCTGCCACACAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGACTGGCCAGTGCCGGTGCAGCCTGCTGCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAA CGACATTA AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGGTTGTTCCGGGGTGTATCGGGGAGGAAGGGTTCGCTAGGCTCTTCTCCGGCGCGTCCACCGCCACATCCCGCGCCGTGTTCATGACGATCGGGCAGCTTT ] [+] EMBL BM655500 [ ccgTGTCGCCATCGTCGCCACCGTCGTCGTGGTCGTCGTCGTTGTGTCGTATTTTTGGCCTTAAACCTCCCCCAGCCGTCCCCCTCACAAGCTACCTGCCACAAAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAA CGACATTA AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCC GGGTGTATC GGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTCCCGCGCCGTGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCG ] [+] EMBL BM598180 [ ccgGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAA TGACATTA AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCC GGGTGTATC GGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTCCCGCGCCGTGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGGCCACTTTG ] [+] EMBL BX468297 [ gcCAGAATCGGCACTAGAGAGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGGTTGTTCC GGGTGTATC GGGAGGAAGGGTTCGCTAGGCTCTTCTCCGGCGCGTCCACCGCCACATCCCGCGCCGTGTTCATGACGATCGGGCAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGGCCACTTTGGTGACAATCTCACCGANCCACTTCCTGTCGTCGCTAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTGCGATGAACGCGAAGCCGGGCGAGTTCAGCGGACGTCTGGGACATTGTGCGCTTTACGGCCCGGCTCGGCCCGNTCGGTNTNCTTCAAGGGCTACGTGCCGGCGTTCGTGCGCCTCNGGCCGAACACCATCCTGACGTTCGTCATTCCTGGAGCAGNCTGCNGGCAT ] [+] EMBL BX609606 [ ACATTA AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGGTTGTTCC GGGTGTATC GGGAGGAAGGGTTCGCTAGGCTCTTCTCCGGCGCGTCCACCGCCACATCCCGCGCCGTGTTCATGACGATCGGGCAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGTCCACTTTGGTGACAATCTCACC ACCCACTTCCTGTCGTCGCTAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTGCGATGAACGCGAAGCCGGGCGAGTTCAGCGG CGTCTGGGACATTGTGCGCTTTACGGCCCGGCTCGGCCCGCTCGG TTTCTTCAAGGGCTACGTGCCGGCGTTCGTGCGCCTCGGGCCGCACACCATCCTGACGTTCGTC TTCCTGGAGCAG CTGC GCATGAACTTTGGCTACCTGAAGCCGTAAGCGCGGTTCGGTTCCCCCTTAGGCTGTGTGTTACGGGCCATGG ] [+] EMBL BX615119 [ AGCTTCCCGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCC GGGTGTATC GGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTCCCGCGCCGTGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGGCCACTTTGGTGACAATCTCACC ACCCACTTCCTGTCGTCGCTAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTGCGATGAACGCGAAGCCGGGCGAGTTCAGCGG CGTCTGGGACATTGTGCGCTTTACGGCCCGGCTCGGGCCGCTCGG GTTCTTCAAGGGCTACGTGCCGGCGTTCGTGCGCCTCGGGCCGCACACCATCCTGACGTTCGTC TTCCTGGAGCAG CTGC GCATGAACTTTGGCTACCTGAAGCCGTAAGCGCGGTTCGGTTCCCCCTTAGGCTGTGTGTTGCGGGCCATGCAAAAACAACCATGCCACAACCATCACACACATACCCACTCACCTCTACTATCCACTAACGATTTACCGGTTACGGGTTACCGTGAGCTTTTAGAGCAATTTTGACACATTCCACTAACGAACAAGCATCAGTCACGAGTCA] [+] EMBL BX613187 [ TATC TGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTCCCGCGCCGGGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGGCCACTTTGGTGACAATCTCACC ACCCACTTCCTGTCGTCGCTAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTGCGATGAACGCGAAGCCGGGC ] consensusID : consensus_8559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 605 fasta sequence [CCGCCCACGCGTCCGGTCGTGCTGAGTGGGTGTGCGCCTGGCGCAATTACAACTCCAA----CCCCCCCCCAGAAATCGGAAGCATCGCATCGGAATCTAACCTCCCCGTCCAGAGTTCGGTGGAATCGGGGAATTCGGTGTAACGACCTGCAACAGCGCCACAAAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAACGACATTAAGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCCG] [+] EMBL BM580391 [CCGCCCACGCGTCCGGTCGTGCTGAGTGGGTGTGCGCCTGGCGCAATTACAACTCCAA CCCCCCCCCAGAAATCGGAAGCATCGCATCGGAATCTAACCTCCCCGTCCAGAGTTCGGTGGAATCGGGGAATTCGGTGTAACGACCTGCAACAGCGCCACAAAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAACGACATTAAGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCCG] [+] EMBL BM642819 [ ccgGAGTGGGTGTGCGCCTGGCGCAATTACAACTCCAACCCCCCCCCCCCCAGAAATCGGAAGCATCGCATCGGAATCTGACCTTCCCGCCCAGAGTTCGGTGGAATCGGGGAATTCGGTGTAACGACCTGCAGCAGCGCCACACAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGACCTGCTCAAGGTTACGCTGCAGACGCAGC ] [+] EMBL BX613026 [ CACCCACCCGCTGGATCTGCTCAAGGGTACGCCGCAGACGCAGCAGGAGGGCAAAATCCCGCCGCTCCAGCCGACGGGCAAGGGCGGGCGCACACAGGGCGTACGGGCGCTGTACAATGGTCCGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTCCGGCATCCACGAGGGCGGCAAGCAGGCGAAGGGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8559#0 ------------CCGATTGAAAAGCAGTCGAGAGTGTTCGTCACCGTTGCTGCCGTCGCC 48 consensus_8559#1 CCGCCCACGCGTCCGGTCGTGCTGAGTGGGTGTGCGCCTGGCGCAATTACAACTCCAACC 60 *** * * * * * * * * * * ** * * ** consensus_8559#0 TGTCGCCATCG-TCGCCACCGTCG--TCGTGGTC-GTCGTCGTTGTGTCGTATTTT-TGG 103 consensus_8559#1 CCCCCCCAGAAATCGGAAGCATCGCATCGGAATCTAACCTCCCCGTCCAGAGTTCGGTGG 120 * *** *** * * *** *** ** * ** ** * ** *** consensus_8559#0 CCTTAAACCTCCCCCAGCCGTCCCCCTCACAAGCTACCTGCCACACAATGTCCGACGACA 163 consensus_8559#1 AATCGGGGAATTCGGTGTAACGACCTGCAACAGC-----GCCACAAAATGTCCGACGACA 175 * * * ** ** *** ****** ************** consensus_8559#0 AGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCT 223 consensus_8559#1 AGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCT 235 ************************************************************ consensus_8559#0 GCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCT 283 consensus_8559#1 GCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCT 295 ************************************************************ consensus_8559#0 CGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATG 343 consensus_8559#1 CGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATG 355 ************************************************************ consensus_8559#0 GTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACG 403 consensus_8559#1 GTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACG 415 ************************************************************ consensus_8559#0 AGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCG 463 consensus_8559#1 AGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCG 475 ************************************************************ consensus_8559#0 GTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAA 523 consensus_8559#1 GTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAA 535 ************************************************************ consensus_8559#0 TGCAGAACGACATTAAGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACG 583 consensus_8559#1 TGCAGAACGACATTAAGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACG 595 ************************************************************ consensus_8559#0 GATTGTTCCGGGTGTATCGGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCG 643 consensus_8559#1 GATTGTTCCG-------------------------------------------------- 605 ********** consensus_8559#0 CCACGTCCCGCGCCGTGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGG 703 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 ATCTGCTGCTGCAATCCGGCCACTTTGGTGACAATCTCACCACCCACTTCCTGTCGTCGC 763 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 TAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTG 823 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 CGATGAACGCGAAGCCGGGCGAGTTCAGCGGCGTCTGGGACATTGTGCGCTTTACGGCCC 883 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 GGCTCGGCCCGCTCGGNTTCTTCAAGGGCTACGTGCCGGCGTTCGTGCGCCTCGGGCCGC 943 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 ACACCATCCTGACGTTCGTCTTCCTGGAGCAGCTGCGCATGAACTTTGGCTACCTGAAGC 1003 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 CGTAAGCGCGGTTCGGTTCCCCCTTAGGCTGTGTGTTACGGGCCATGGAAAAACAACCAT 1063 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 GCCACAACCATCACACACATACCCACTCACCTCTACTATCCACTAACGATTTACCGGTTA 1123 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 CGGGTTACCGTGAGCTTTTAGAGCAATTTTGACACATTCCACTAACGAACAAGCATCAGT 1183 consensus_8559#1 ------------------------------------------------------------ consensus_8559#0 CACGAGTCA 1192 consensus_8559#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||