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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1192 fasta sequence
[CCGATTGAAAAGCAGTCGAGAGTGTTCGTCACCGTTGCTGCCGTCGCCTGTCGCCATCGTCGCCACCGTCGTCGTGGTCGTCGTCGTTGTGTCGTATTTTTGGCCTTAAACCTCCCCCAGCCGTCCCCCTCACAAGCTACCTGCCACACAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAA-CGACATTA---AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCC-GGGTGTATC-GGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTCCCGCGCCGTGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGGCCACTTTGGTGACAATCTCACC-ACCCACTTCCTGTCGTCGCTAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTGCGATGAACGCGAAGCCGGGCGAGTTCAGCGG-CGTCTGGGACATTGTGCGCTTTACGGCCCGGCTCGGCCCGCTCGG-NTTCTTCAAGGGCTACGTGCCGGCGTTCGTGCGCCTCGGGCCGCACACCATCCTGACGTTCGTC-TTCCTGGAGCAG-CTGC--GCATGAACTTTGGCTACCTGAAGCCGTAAGCGCGGTTCGGTTCCCCCTTAGGCTGTGTGTTACGGGCCATGGAAAAACAACCATGCCACAACCATCACACACATACCCACTCACCTCTACTATCCACTAACGATTTACCGGTTACGGGTTACCGTGAGCTTTTAGAGCAATTTTGACACATTCCACTAACGAACAAGCATCAGTCACGAGTCA]
[+] EMBL BM638499 [CCGATTGAAAAGCAGTCGAGAGTGTTCGTCACCGTTGCTGCCGTCGCCTGTCGCCATCGTCGCCACCGTCGTCGTGGTCGTCGTCGTTGTGTCGTATTTTTGGCCTTAAACCTCCCCCAGCCGTTCCCCTCACAAGCTACCTGCCACACAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGACCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTCCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAA CGACATTA AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCC GGGTGTATC GGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTC ]
[+] EMBL BM648802 [ cCGCCTGTCGCCATCGTCGCCACCGTCGTCGTGGTCGTCGTCGCTGTGTCGTATTTTTGGCCTTAAGCCTCCCCCAGCCGTCCCCCTCACAAGCTACCTGCCACACAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGACTGGCCAGTGCCGGTGCAGCCTGCTGCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAA CGACATTA AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGGTTGTTCCGGGGTGTATCGGGGAGGAAGGGTTCGCTAGGCTCTTCTCCGGCGCGTCCACCGCCACATCCCGCGCCGTGTTCATGACGATCGGGCAGCTTT ]
[+] EMBL BM655500 [ ccgTGTCGCCATCGTCGCCACCGTCGTCGTGGTCGTCGTCGTTGTGTCGTATTTTTGGCCTTAAACCTCCCCCAGCCGTCCCCCTCACAAGCTACCTGCCACAAAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAA CGACATTA AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCC GGGTGTATC GGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTCCCGCGCCGTGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCG ]
[+] EMBL BM598180 [ ccgGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAA TGACATTA AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCC GGGTGTATC GGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTCCCGCGCCGTGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGGCCACTTTG ]
[+] EMBL BX468297 [ gcCAGAATCGGCACTAGAGAGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGGTTGTTCC GGGTGTATC GGGAGGAAGGGTTCGCTAGGCTCTTCTCCGGCGCGTCCACCGCCACATCCCGCGCCGTGTTCATGACGATCGGGCAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGGCCACTTTGGTGACAATCTCACCGANCCACTTCCTGTCGTCGCTAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTGCGATGAACGCGAAGCCGGGCGAGTTCAGCGGACGTCTGGGACATTGTGCGCTTTACGGCCCGGCTCGGCCCGNTCGGTNTNCTTCAAGGGCTACGTGCCGGCGTTCGTGCGCCTCNGGCCGAACACCATCCTGACGTTCGTCATTCCTGGAGCAGNCTGCNGGCAT ]
[+] EMBL BX609606 [ ACATTA AGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGGTTGTTCC GGGTGTATC GGGAGGAAGGGTTCGCTAGGCTCTTCTCCGGCGCGTCCACCGCCACATCCCGCGCCGTGTTCATGACGATCGGGCAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGTCCACTTTGGTGACAATCTCACC ACCCACTTCCTGTCGTCGCTAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTGCGATGAACGCGAAGCCGGGCGAGTTCAGCGG CGTCTGGGACATTGTGCGCTTTACGGCCCGGCTCGGCCCGCTCGG TTTCTTCAAGGGCTACGTGCCGGCGTTCGTGCGCCTCGGGCCGCACACCATCCTGACGTTCGTC TTCCTGGAGCAG CTGC GCATGAACTTTGGCTACCTGAAGCCGTAAGCGCGGTTCGGTTCCCCCTTAGGCTGTGTGTTACGGGCCATGG ]
[+] EMBL BX615119 [ AGCTTCCCGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCC GGGTGTATC GGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTCCCGCGCCGTGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGGCCACTTTGGTGACAATCTCACC ACCCACTTCCTGTCGTCGCTAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTGCGATGAACGCGAAGCCGGGCGAGTTCAGCGG CGTCTGGGACATTGTGCGCTTTACGGCCCGGCTCGGGCCGCTCGG GTTCTTCAAGGGCTACGTGCCGGCGTTCGTGCGCCTCGGGCCGCACACCATCCTGACGTTCGTC TTCCTGGAGCAG CTGC GCATGAACTTTGGCTACCTGAAGCCGTAAGCGCGGTTCGGTTCCCCCTTAGGCTGTGTGTTGCGGGCCATGCAAAAACAACCATGCCACAACCATCACACACATACCCACTCACCTCTACTATCCACTAACGATTTACCGGTTACGGGTTACCGTGAGCTTTTAGAGCAATTTTGACACATTCCACTAACGAACAAGCATCAGTCACGAGTCA]
[+] EMBL BX613187 [ TATC TGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCGCCACGTCCCGCGCCGGGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGGATCTGCTGCTGCAATCCGGCCACTTTGGTGACAATCTCACC ACCCACTTCCTGTCGTCGCTAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTGCGATGAACGCGAAGCCGGGC ]
consensusID : consensus_8559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 605 fasta sequence
[CCGCCCACGCGTCCGGTCGTGCTGAGTGGGTGTGCGCCTGGCGCAATTACAACTCCAA----CCCCCCCCCAGAAATCGGAAGCATCGCATCGGAATCTAACCTCCCCGTCCAGAGTTCGGTGGAATCGGGGAATTCGGTGTAACGACCTGCAACAGCGCCACAAAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAACGACATTAAGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCCG]
[+] EMBL BM580391 [CCGCCCACGCGTCCGGTCGTGCTGAGTGGGTGTGCGCCTGGCGCAATTACAACTCCAA CCCCCCCCCAGAAATCGGAAGCATCGCATCGGAATCTAACCTCCCCGTCCAGAGTTCGGTGGAATCGGGGAATTCGGTGTAACGACCTGCAACAGCGCCACAAAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCTCGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATGGTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACGAGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCGGTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAATGCAGAACGACATTAAGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACGGATTGTTCCG]
[+] EMBL BM642819 [ ccgGAGTGGGTGTGCGCCTGGCGCAATTACAACTCCAACCCCCCCCCCCCCAGAAATCGGAAGCATCGCATCGGAATCTGACCTTCCCGCCCAGAGTTCGGTGGAATCGGGGAATTCGGTGTAACGACCTGCAGCAGCGCCACACAATGTCCGACGACAAGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCTGCACCCACCCGCTGGACCTGCTCAAGGTTACGCTGCAGACGCAGC ]
[+] EMBL BX613026 [ CACCCACCCGCTGGATCTGCTCAAGGGTACGCCGCAGACGCAGCAGGAGGGCAAAATCCCGCCGCTCCAGCCGACGGGCAAGGGCGGGCGCACACAGGGCGTACGGGCGCTGTACAATGGTCCGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTCCGGCATCCACGAGGGCGGCAAGCAGGCGAAGGGCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8559#0 ------------CCGATTGAAAAGCAGTCGAGAGTGTTCGTCACCGTTGCTGCCGTCGCC 48
consensus_8559#1 CCGCCCACGCGTCCGGTCGTGCTGAGTGGGTGTGCGCCTGGCGCAATTACAACTCCAACC 60
*** * * * * * * * * * * ** * * **
consensus_8559#0 TGTCGCCATCG-TCGCCACCGTCG--TCGTGGTC-GTCGTCGTTGTGTCGTATTTT-TGG 103
consensus_8559#1 CCCCCCCAGAAATCGGAAGCATCGCATCGGAATCTAACCTCCCCGTCCAGAGTTCGGTGG 120
* *** *** * * *** *** ** * ** ** * ** ***
consensus_8559#0 CCTTAAACCTCCCCCAGCCGTCCCCCTCACAAGCTACCTGCCACACAATGTCCGACGACA 163
consensus_8559#1 AATCGGGGAATTCGGTGTAACGACCTGCAACAGC-----GCCACAAAATGTCCGACGACA 175
* * * ** ** *** ****** **************
consensus_8559#0 AGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCT 223
consensus_8559#1 AGAAGAAGCGTGTTTCGTACTGGTACTTCGGCGGATTGGCCAGTGCCGGTGCGGCCTGCT 235
************************************************************
consensus_8559#0 GCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCT 283
consensus_8559#1 GCACCCACCCGCTGGATCTGCTCAAGGTTACGCTGCAGACGCAGCAGGAGGGCAAAATCT 295
************************************************************
consensus_8559#0 CGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATG 343
consensus_8559#1 CGCTGCTCCAGCTGACGGGCAAGGTCGTGCGCACACAGGGCGTACTGGCGCTGTACAATG 355
************************************************************
consensus_8559#0 GTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACG 403
consensus_8559#1 GTCTGTCCGCGTCACTGCTGCGCCAGCTGACGTACTCGACGACCCGGTTCGGCATCTACG 415
************************************************************
consensus_8559#0 AGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCG 463
consensus_8559#1 AGGTCGGCAAGCAGGCGATGGGCAACGACTCCGGCTTCCTGGGCAAGGCGGCCCTGGCCG 475
************************************************************
consensus_8559#0 GTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAA 523
consensus_8559#1 GTGCGGCCGGAGCGGCCGGCGGTTTCGTCGGCACACCGGCGGACATGGTGAACGTGCGAA 535
************************************************************
consensus_8559#0 TGCAGAACGACATTAAGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACG 583
consensus_8559#1 TGCAGAACGACATTAAGCTTCCGGTGGAGCAGCGAAGAAACTACAAGAACGCCGTCGACG 595
************************************************************
consensus_8559#0 GATTGTTCCGGGTGTATCGGGAGGAAGGATTTGCCAGGCTCTTCTCCGGCGCGTCCACCG 643
consensus_8559#1 GATTGTTCCG-------------------------------------------------- 605
**********
consensus_8559#0 CCACGTCCCGCGCCGTGTTCATGACGATCGGACAGCTTTCGTTCTACGATCTGGTGAAGG 703
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 ATCTGCTGCTGCAATCCGGCCACTTTGGTGACAATCTCACCACCCACTTCCTGTCGTCGC 763
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 TAACCGCGGGTGCCATCGCCACCACCCTCACCCAGCCGCTGGACGTGCTGAAGACGCGTG 823
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 CGATGAACGCGAAGCCGGGCGAGTTCAGCGGCGTCTGGGACATTGTGCGCTTTACGGCCC 883
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 GGCTCGGCCCGCTCGGNTTCTTCAAGGGCTACGTGCCGGCGTTCGTGCGCCTCGGGCCGC 943
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 ACACCATCCTGACGTTCGTCTTCCTGGAGCAGCTGCGCATGAACTTTGGCTACCTGAAGC 1003
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 CGTAAGCGCGGTTCGGTTCCCCCTTAGGCTGTGTGTTACGGGCCATGGAAAAACAACCAT 1063
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 GCCACAACCATCACACACATACCCACTCACCTCTACTATCCACTAACGATTTACCGGTTA 1123
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 CGGGTTACCGTGAGCTTTTAGAGCAATTTTGACACATTCCACTAACGAACAAGCATCAGT 1183
consensus_8559#1 ------------------------------------------------------------
consensus_8559#0 CACGAGTCA 1192
consensus_8559#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||