These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1110 fasta sequence [CCGATTCTAAATTTTGTGCATTAGTTCTAACTTTTGATAACAGAAACAGTCGTAAACTAACAATGACGACCAAGGTGGCAGCTAAGAAGTTTAAATGGGCGCTAGATTTCAACACCAAACCGCGCAGCAGTGGATCCGACATTGCGGCACCGCCCGGTTACAATCCTTCGGCGGACGTGATTAGCAGCAAGGTGGTCAACCAAACCGACCAGAGCCACCTGATCCTGAAGAAGTCGTGGGAGATTGCACTCGGTCCGATCAAGCAGTTCCCCATGAACCTGGTCATCATGTACATGTCGGGCAATTCTATCAGCATCTTTCCGATAATGATGGTGGTGATGATGTTTATCCGGCCGGTCAAGATGATGCTGTCGACGCATTCCACGTTCAAAGTGATTGAAGGCATTTCCGCCACCGGACAGAAGCTGGTGTTTCTGCTGGGCAACCTTGTTAACATTGGGCTGGCGCTTTACAAGTGCCACAGCATGGGCCTGCTTCCGACGCATGCGTCCGATTGGCTCGCGTTCGTCGAGCCGCAAAGAAGGTTGGAATATTCCGGCGGCGGCATCTCGTTACTCTGAGCCGGCGGCACAACCATCCACGCGACACCCTGGAGTGCATTTTTGTGAAACAACTTTGTATTTATTTTTCACTACCACATAGAGGATGGTGAGAGGGGTTACAATAAAAAGATGTAAAGCATATACAATGAACGGAACCAGGTGAATTTGGTGACAAACAAAAATCTCTTTCGGTTGAATCTGTTGTTTAAAACGAAAAGTTGTCTAGCCTAGGAGTTGAAAGAACTAGCTTAGAGCCATCCTGAGTTTTCACAAAACCGTAGTCCTGTTGGCCGAGTTTCCGAGGCACTGTAGGTTACGGCTTCTTGTACTGATCGGCGAATTCTTTCGCCTTTTCCAACAGCTTT-CCCGGCTCGTCAACCCTCGGTACCTCATAGTTTTGTGTGATGTAGATCCCGGTGTAAACACCGGCTCCGAACGTCAGCAGAAACTTCAGCATGTCTGTTATTCCGAGTGGATCCACTTTGGACTGCTATTTTTAACCCTTGGAGCGCTAGAAAGGAAAACTGCCCGGAGGCTAGAAGGCCGG] [+] EMBL BM590052 [CCGATTCTAAATTTTGTGCATTAGTTCTAACTTTTGATAACAGAAACAGTCGTAAACTAACAATGACGACCAAGGTGGCAGCTAAGAAGTTTAAATGGGCGCTAGATTTCAACACCAAACCGCGCAGCAGTGGATCCGACATTGCGGCACCGCCCGGTTACAATCCTTCGGCGGACGTGATTAGCAGCAAGGTGGTCAACCAAACCGACCAGAGCCACCTGATCCTGAAGAAGTCGTGGGAGATTGCACTCGGTCCGATCAAGCAGTTCCCCATGAACCTGGTCATCATGTACATGTCGGGCAATTCTATCAGCATCTTTCCGATAATGATGGTGGTGATGATGTTTATCCGGCCGGTCAAGATGATGCTGTCGACGCATTCCACGTTCAAAGTGATTGAAGGCATTTCCGCCACCGGACAGAAGCTGGTGTTTCTGCTGGGCAACCTTGTTAACATTGGGCTGGCGCTTTACAAGTGCCACAGCATGGGCCTGCTTCCGACGCATGCGTCCGATTGGCTCGCGTTCGTCGAGCCGCAAAGAAGGTTGGAATATTCCGGCGGCGGCATCTCGTTACTCTGAGCCGGCGGCACAACCATCCACGCGACACCCTGGAGT ] [+] EMBL BM644967 [ ccgAAATTTTGTGCATTAGTTCTAACTTTTGATAACAGAAACAGTCGTAAACTAACAATGACGACCAAGGTGGCAGCTAAGAAGTTTAAATGGGCGCTAGATTTCAACACCAAACCGCGCAGCAGTGGATCCGACATTGCGGCACCGCCCGGTTACAATCCTTCGGCGGACGTGATTAGCAGCAAGGTGGTCAACCAAACCGACCAGAGCCACCTGATCCTGAAGAAGTCGTGGGAGATTGCACTCGGTCCGATCAAGCAGTTCCCCATGAACCTGGTCATCATGTACATGTCGGGCAATTCTATCAGCATCTTTCCGATAATGATGGTGGTGATGATGTTTATCCGGCCGGTCAAGATGATGCTGTCGACGCATTCCACGTTCAAAGTGATTGAAGGCATTTCCGCCACCGGACAGAAGCTGGTGTTTCTGCTGGGCAACCTTGTTAACATTGGGCTGGCGCTTTACAAGTGCCACAGCATGGGCCTGCTTCCGACGCATGCGTCCGATTGGCTCGCGTTCGTCGAGCCGCAAAGAAGGTTGGAATATTCCGGCGGCGGCATCTCGTTACTCTGAGCCGGCGGCACAACCATCCACGCGACACCCTGGAGTGCATTTTTGTGAAAC ] [+] EMBL BX623050 [ TCTAACTTTTNATAACAGAAACAGTCGTAAACTAACAATGACGACCAAGGTGGCAGCTAAGAAGTTTAAATGGGCGCTAGATTTCAACACCAAACCGCGCAGCAGTGGATCCGACATTGCGGCACCGCCCGGTTACAATCCTTCGGCGGACGTGATTAGCAGCAAGGTGGTCAACCAAACCGACCAGAGCCACCTGATCCTGAAGAAGTCGTGGGAGATTGCACTCGGTCCGATCAAGCAGTTCCCCATGAACCTGGTCATCATGTACATGTCGGGCAATTCTATCAGCATCTTTCCGATAATGATGGTGGTGATGATGTTTATCCGGCCGGTCAAGATGATGCTGTCGACGCATTCCACGTTCAAAGTGATTGAAGGCATTTCCGCCACCGGACAGAAGCTGGTGTTTCTGCTGGGCAACCTTGTTAACATTGGGCTGGCGCTTTACAAGTGCCACAGCATGGGCCTGCTTCCGACGCATGCGTCCGATTGGCTCGCGTTCGTCGAGCCGCAAAGAAGGTTGGAATATTCCGGCGGCGGCATCTCGTTACTCTGAGCCGGCGGCACAACCATCCACGCGA ] [+] EMBL BX615726 [ ACTAACAATGACGACCAAGGTGGCAGCTAAGAAGTTTAAATGGGCGCTAGATTTCAACACCAAACCGCGCAGCAGTGGATCCGACATTGCGGCACCGCCCGGTTACAATCCTTCGGCGGACGTGATTAGCAGCAAGGTGGTCAACCAAACCGACCAGAGCCACCTGATCCTGAAGAAGTCGTGGGAGATTGCACTCGGTCCGATCAAGCAGTTCCCCATGAACCTGGTCATCATGTACATGTCGGGCAATTCTATCAGCATCTTTCCGATAATGATGGTGGTGATGATGTTTATCCGGCCGGTCAAGATGATGCTGTCGACGCATTCCACGTTCAAAGTGATTGAAGGCATTTCCGCCACCGGACAGAAGCTGGTGTTTCTGCTGGGCAACCTTGTTAACATTGGGCTGGCGCTTTACAAGTGCCACAGCATGGGCCTGCTTCCGACGCATGCGTCCGATTGGCTCGCGTTCGTCGAGCCGCAAAGAAGGTTGGAATATTCCGGCGGCGGCATCTCGTTACTCTGAGCCGGCGGCACAACCATCCACGCGACACCCTGGAGTGCATTTTTGTGAAACAACTTTGTATTTATTTTTCACTACCACATAGAGGATGGTGAGAGGGGTTACAATAAAAAGATGTAAAGCATATACAATGAACGGAACCAGGTGAATTT ] [+] EMBL BX620726 [ AATGACGACCAAGGTGGCANCTAAGAAGTTTAAATGGGCGCTAGATTTCAACACCAAACCGCGCAGCAGTGGATCCGACATTGCAGCACCACCCGGGTACAATCCGTCGGCGGACGTGATTAGCAGCAAGGTGGTCAACCAGACCGACCAGAGCCACCTGATCCTGAAGAAGTCGTGGGAGATTGCACTCGGTCCGATCAAGCAGTTCCCCATGAACCTGGTCATCATGTACATGTCGGGCAATTCTATCAGCATCTTTCCGATCATGATGGTGGTGATGATGTTTATCCGGCCGGTCAAGATGATGCTGTCGACGCATTCCACGTTCAAAGTGATTGAAGGCATTTCCGCCACCGGACAGAAGCTGGTGTTTCTGCTGGGCAACCTTGTTAACATTGGGCTGGCGCTTTACAAGTGCCACAGCATGGGCCTGCTTCCGACGCATGCGTCCGATTGGCTCGCGTTCGTCGAGCCGCAAAGAAGGTTGGAATATTCCGGCGGCGGCATCTCGTTACTCTGAGCCGGCGGCACAACCATCCACGCGACACCCTGGAGTGCATTTTTGTGAAACAACTTTGTATTTATTTTTCACTACCACATAGAGGATGGTGAGAGGGGTaa ] [-] EMBL BM593539 [ GTGAAACAACTTTGTATTTATTTTTCACTACCACATAGAGGATGGTGAGAGGGGTTACAATAAAAAGACGTAAAGCATATACAATGAACGGAACCAGGTGAATTTGGTGACAAACAAAAATCTCTTTCGGTTGAATCTGTTGTTTAAAACGAAAAGTTGTCTAGCCTAGGAGTTGAAAGAACTAGCTTAGAGCCATCCTGAGTTTTCACAAAACCGTAGTCCTGTTGGCCGAGTTTCCGAGGCACTGTAGGTTACGGCTTCTTGTACTGATCGGCGAATTCTTTCGCCTTTTCCAACAGCTTT CCCGGCTCGTCAACCCTCGGTACCTCATAGTTTTGTGTGATGTAGATCCCGGTGTAAACACCGGCTCCGAACGTCAGCAGAAACTTCAGCATGTCTGTTATTCCGAGTGGATCCACTTTGGACTGCTATTTTTAACCCTTGGAGCGCTAGAAAGGAAAACTGCCCGGAGGCTAGAAGGCCGG] [-] EMBL BM637715 [ GTGAAACAACTTTGTATTTATTTTTCACTACCACATAGAGGATGGTGAGAGGGGTTACAATAAAAAGACGTAAAGCATATACAATGAACGGAACCAGGTGAATTTGGTGACAAACAAAAATCTCTTTCGGTTGAATCTGTTGTTTAAAACGAAAAGTTGTCTAGCCTAGGAGTTGAAAGAACTAGCTTAGAGCCATCCTGAGTTTTCACAAAACCGTAGTCCTGTTGGCCGAGTTTCCGAGGCACTGTAGGTTACGGCTTCTTGTACTGATCGGCGAATTCTTTCGCCTTTTCCAACAGCTTT CCCGGCTCGTCAACCCTCGGTACCTCATAGTTTTGTGTGATGTAGATCCCGGTGTAAACACCGGCTCCGAACGTCAGCAGAAACTTCAGCATGTCTGTTATTCCGAGTGGATCCACTTTGGACTGCTATTTTTAACCCTTGGAGCGCTAGAAAGGAAcgg ] [-] EMBL BM579330 [ GTGAAACAACTTTGTATTTATTTTTCACTACCACATAGAGGATGGTGAGAGGGGTTACAATAAAAAGATGTAAAGCATATACAATGAACGGAACCAGGTGAATTTGGTGACAAACAAAAATCTCTTTCGGTTGAATCTGTTGTTTAAAACGAAAAGTTGTCTAGCCTAGGAGTTGAAAGAACTAGCTTAGAGCCATCCTGAGTTTTCACAAAACCGTAGTCCTGTTGGCCGAGTTTCCGAGGCACTGTAGGTTACGGCTTCTTGTACTGATCGGCGAATTCTTTCGCCTTTTCCAACAGCTTT CCCGGCTCGTCAACCCTCGGTACCTCATAGTTTTGTGTGATGTAGATTCCGGTGTAAACACCGGCTCCGAACGTCAGCAGAAACTTCAGCATGTCTGTTATTCCGAGTGGATCCACcgg ] [-] EMBL BM642514 [ GTGAAACAACTTTGTATTTATTTTTCACTACCACATAGAGGATGGTGAGAGGGGTTACAATAAAAAGATGTAAAGCATATACAATGAACGGAACCAGGTGAATTTGGTGACAAACAAAAATCTCTTTCGGTTGAATCTGTTGTTTAAAACGAAAAGTTGTCTAGCCTAGGAGTTGAAAGAACTAGCTTAGAGCCATCCTGAGTTTTCACAAAACCGTAGTCCTGTTGGCCGAGTTTCCGAGGCACTGTAGGTTACGGCTTCTTGTACTGATCGGCGAATTCTTTCGCCTTTTCCAACAGCTTT CCCGGCTCGTCAACCCTCGGTACCTCATAGTTTTGTGTGATGTAGATTCCGGTGTAAACACCGGCTCCGAACGTCAGCAGAAACTTCAGCATGTCcgg ] [-] EMBL BX625369 [ ATTTATTTTTCACTACCACATAGAGGATGGTGAGAGGGGTAACAATAAAAAGACGTAAAGCATATACAATGAACGAAACCAGGTGAATTTGGTGACAAACAAAAATNTNTTTCGGTTGAATCTGTTGTTTAAAACGAAAAGTTGTCTAGCCTAGGAGTNGAAAGAACTAGCTTAGAGCCATCTTGAGTTTTCACAAAACCGTAGTCCTGTTGGCCGAGTTTCCGAGGCACTGTAGGTTACGGCTTCTTGTACTGATCGGCGAATTCTTTCGCCTTTTCCAACAGCTTTNCCCGGCTCGTCAACCCTCGGTACCTCATAGTTTTGTGTGATGTAGATCCCGGTGTAAACACCGGCTCCGA ] consensusID : consensus_8577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [GGCACATTTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAACAACTTTGTATTTATTTTTCACTACCACATAGAGGATGGTGAGAGGGGTTACAATAAAAAGACGTAAAGCATATACAATGAACGGAACCAGGTGAATTTGGTGACAAACAAAAATCTCTTTCGGTTGAATCTGTTGTTTAAAACGAAAAGTTGTCTAGCCTAGGAGTTGAAAGAACTAGCTTAGAGCCATCCTGAGTTTTCACAAAACCGTAGTCCTGTTGGCCGAGTTTCCGAGGCAATGTAGGTTACGGCTTCTTGTACTGATCGGCGAATTTCTTTCGCCTTTTCCAACAGCTTTCCCGGCTCGTCAACCCTCGGTACCTCATAGTTTTGTGTGATGTAGATCCCCGGTGTAAACACCGGCTCCGAACGTCAGCAGAAACTTCAGCATGTCTGTTATTCCGAGTGGATCCACT] [-] EMBL CNS08NTJ [GGCACATTTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAACAACTTTGTATTTATTTTTCACTACCACATAGAGGATGGTGAGAGGGGTTACAATAAAAAGACGTAAAGCATATACAATGAACGGAACCAGGTGAATTTGGTGACAAACAAAAATCTCTTTCGGTTGAATCTGTTGTTTAAAACGAAAAGTTGTCTAGCCTAGGAGTTGAAAGAACTAGCTTAGAGCCATCCTGAGTTTTCACAAAACCGTAGTCCTGTTGGCCGAGTTTCCGAGGCAATGTAGGTTACGGCTTCTTGTACTGATCGGCGAATTTCTTTCGCCTTTTCCAACAGCTTTCCCGGCTCGTCAACCCTCGGTACCTCATAGTTTTGTGTGATGTAGATCCCCGGTGTAAACACCGGCTCCGAACGTCAGCAGAAACTTCAGCATGTCTGTTATTCCGAGTGGATCCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8577#0 CCGATTCTAAATTTTGTGCATTAGTTCTAACTTTTGATAACAGAAACAGTCGTAAACTAA 60 consensus_8577#1 ------------------------------------------------------------ consensus_8577#0 CAATGACGACCAAGGTGGCAGCTAAGAAGTTTAAATGGGCGCTAGATTTCAACACCAAAC 120 consensus_8577#1 ------------------------------------------------------------ consensus_8577#0 CGCGCAGCAGTGGATCCGACATTGCGGCACCGCCCGGTTACAATCCTTCGGCGGACGTGA 180 consensus_8577#1 ------------------------------------------------------------ consensus_8577#0 TTAGCAGCAAGGTGGTCAACCAAACCGACCAGAGCCACCTGATCCTGAAGAAGTCGTGGG 240 consensus_8577#1 ------------------------------------------------------------ consensus_8577#0 AGATTGCACTCGGTCCGATCAAGCAGTTCCCCATGAACCTGGTCATCATGTACATGTCGG 300 consensus_8577#1 ------------------------------------------------------------ consensus_8577#0 GCAATTCTATCAGCATCTTTCCGATAATGATGGTGGTGATGATGTTTATCCGGCCGGTCA 360 consensus_8577#1 ------------------------------------------------------------ consensus_8577#0 AGATGATGCTGTCGACGCATTCCACGTTCAAAGTGATTGAAGGCATTTCCGCCACCGGAC 420 consensus_8577#1 ------------------------------------------------------------ consensus_8577#0 AGAAGCTGGTGTTTCTGCTGGGCAACCTTGTTAACATTGGGCTGGCGCTTTACAAGTGCC 480 consensus_8577#1 ------------------------------------------------------------ consensus_8577#0 ACAGCATGGGCCTGCTTCCGACGCATGCGTCCGATTGGCTCGCGTTCGTCGAGCCGCAAA 540 consensus_8577#1 ------------------------------------------------------------ consensus_8577#0 GAAGGTTGGAATATTCCGGCGGCGGCATCTCGTTACTCTGAGCCGGCGGCACAACCATCC 600 consensus_8577#1 -----------------------------------------------GGCACATTTGGCC 13 ****** ** consensus_8577#0 ACGCGACACCCTGGAGTGCATTTTT--GTGAAACAACTTTGTATTTATTTTTCACTACCA 658 consensus_8577#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAACAACTTTGTATTTATTTTTCACTACCA 73 * * ***** ********************************* consensus_8577#0 CATAGAGGATGGTGAGAGGGGTTACAATAAAAAGATGTAAAGCATATACAATGAACGGAA 718 consensus_8577#1 CATAGAGGATGGTGAGAGGGGTTACAATAAAAAGACGTAAAGCATATACAATGAACGGAA 133 *********************************** ************************ consensus_8577#0 CCAGGTGAATTTGGTGACAAACAAAAATCTCTTTCGGTTGAATCTGTTGTTTAAAACGAA 778 consensus_8577#1 CCAGGTGAATTTGGTGACAAACAAAAATCTCTTTCGGTTGAATCTGTTGTTTAAAACGAA 193 ************************************************************ consensus_8577#0 AAGTTGTCTAGCCTAGGAGTTGAAAGAACTAGCTTAGAGCCATCCTGAGTTTTCACAAAA 838 consensus_8577#1 AAGTTGTCTAGCCTAGGAGTTGAAAGAACTAGCTTAGAGCCATCCTGAGTTTTCACAAAA 253 ************************************************************ consensus_8577#0 CCGTAGTCCTGTTGGCCGAGTTTCCGAGGCACTGTAGGTTACGGCTTCTTGTACTGATCG 898 consensus_8577#1 CCGTAGTCCTGTTGGCCGAGTTTCCGAGGCAATGTAGGTTACGGCTTCTTGTACTGATCG 313 ******************************* **************************** consensus_8577#0 GCGAATT-CTTTCGCCTTTTCCAACAGCTTTCCCGGCTCGTCAACCCTCGGTACCTCATA 957 consensus_8577#1 GCGAATTTCTTTCGCCTTTTCCAACAGCTTTCCCGGCTCGTCAACCCTCGGTACCTCATA 373 ******* **************************************************** consensus_8577#0 GTTTTGTGTGATGTAGATCCC-GGTGTAAACACCGGCTCCGAACGTCAGCAGAAACTTCA 1016 consensus_8577#1 GTTTTGTGTGATGTAGATCCCCGGTGTAAACACCGGCTCCGAACGTCAGCAGAAACTTCA 433 ********************* ************************************** consensus_8577#0 GCATGTCTGTTATTCCGAGTGGATCCACTTTGGACTGCTATTTTTAACCCTTGGAGCGCT 1076 consensus_8577#1 GCATGTCTGTTATTCCGAGTGGATCCACT------------------------------- 462 ***************************** consensus_8577#0 AGAAAGGAAAACTGCCCGGAGGCTAGAAGGCCGG 1110 consensus_8577#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||