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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1078 fasta sequence
[CGNAGGGTTTTTTTACATATTATCTTACGATTGTTCCGGTGTTTATGAATTCGTTTTACTACTTGAAACACAACAAATAACTAGCAATGAATACACACACACACTCTGGCGATGGCGTGG-AATGGAAGGCAGGCGTGTGTACGATCGAATTGCTGGCTGGACGCTGGTGAACGATTTGCAAACACAGGAAACTAAAACAA-CCTTAATATACATACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGATGATAGTAAGCCCCAAGAACGCGAGTCTAGCGCAAGAGGTAATGCACATGA-TAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT--GC--GTGTG-TGT-TTGTAGTCTCGAACGGTGGGGCCTCACTCTGCCGATCGCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGAGGATTAGAA-GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACAATTT-TCTTACATTAATTT-TAATCA-T-TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTA-TTTTTTTTTCTTCAAATTAACTAGGTTTGTTTTT-CCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAACTTGCGAGAACACATTTTTTGTACTGCATTATGCCCTTAAGTAATAAAACAACCTTGTTTAAGTGTAGTTCAAGCTGCGTTGGC]
[+] EMBL AL933033 [CGNAGGGTTTTTTTACATATTATCTTACGATTGTTCCGGTGTTTATGAATTCGTTTTACTACTTGAAACACAACAAATAACTAGCAATGAATACACACACACACTCTGGCGATGGCGTGGCAATGGAAGGCAGGCGTGTGTACGATCGAATTGCTGGCTGGACGCTGGTGAACGATTTGCAAACACAGGAAACTAAAACAACCCTTAATATACATACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGATGATAGTAAGCCCCAAGAACGCGAGTCTAGCGCAAGAGGTAATACACATGACTAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT GC GTGTGCTGTCTCGTAGTCTCGAACGGTGGGACCTCACTCT GCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGAGGATTAGAACGGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACAATTTATCTTACATTAATTTCTAATCACTCTATCTCTAACGCGCTT ]
[+] EMBL BM650347 [ CCGGTGTTTATGAATTCGTTTTACTACTTGAAACACAACAAATAACTAGCAATGAATACACACACACACTCTGGCGATGGCGTGG AATGGAAGGCAGGGGTGTGTACGATCGAATTGCTGGCTGGACGCTGGTGAACGATTTGCAAACACAGGAAACTAAAACAA CCTTAATATACATACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGATGATAGTAAGCCCCAAGAACGCGAGTCTAGCGCAAGAGGTAATACACATGA TAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT GC GTGTG TGT TTGTAGTCTCGAACGGTGGGACCTCACTCT GCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGAGGATTAGAA GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACAATTT TCTTACATTAATTT TAATCA T TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTA TTTTTTTTTCTTCAAATTAAC ]
[+] EMBL BX621425 [ CCTTAATATACATACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGATGATAGTAAGCCACGAGAACGCGAGTCTAGCGCAAGAGGTAATGCACATGA TAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT GC GTGTG TGT TTGTAGTCTCGAACGGTGGGGCCTCACTCTGCCGATCGCGAAACGGAGGTTAACAACGTGCAGAAGAGCTAATGAATATAGGAAGAGGATTAGAA GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCTCGAAT GAAGCGCTTGCGCGCTTTCTTGTTTGACAATTT TCTTACATTAATTT TAAACA T TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTA TTTTTTTTCTTCAAATTAACTAGGTTTGTTTTT CCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAA ]
[+] EMBL BX609881 [ GTAAGCCACGAGAACGCGAGTCTAGCGCAAGAGGTAATGCACATGA TAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT GCGTGTGTG TGT TTGGAGTCTCGAACGGTGGGGCCTCACTCTGCCGATCTCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGAGGATTAGAA GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACAATTT TCTTACATTAATTT TAATCA T TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTATTTTTTTTTTCTTCAAATTAACTAGGTTTGTTT ]
[+] EMBL BX622504 [ AGAACGCGAGTCTAGCGCAAGAGGTAATGCACATGA TAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT GC GTGTG TGT TTGTAGTCTCGAACGGTGGGGCCTCACTCTGCCGATCGCGAAACGGAGGTTAACAACGTGCAGAAGAGCTAATGAATATAGGAAGAGGATTAGAA GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCTCGAAT GAAGCGCTTGCGCGCTTTCTTGTTTGACAATTT TCTTACATTAATTT TAAACA T TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTA TTTTTTTTCTTCAAATTAACTAGGTTTGTTTTT CCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCNCCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAANGAATTTNGAAAAGCGGGAAAAGGACGAACTAAGAATAATCCAAC ]
[+] EMBL BX615458 [ GGCGCGTAAACATGAATCAGTGTGCGC GTGTG TGT TTGGAGTCTCGAACGGTGGGGCCTCACTCTGCCGATCTCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGAGGATTAGAA GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACAATTT TCTTACATTAATTT TAATCA T TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTATTTTTTTTTTCTTCAAATTAACTAGGTTTGTTTTT CCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTTCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAACTTGCGAGAACACATTTTTTGTACTGCATTATGCCCTTAAGTAATAAAACAACCTT ]
[+] EMBL AGA280506 [ ttTTTAAATTAACTAGGTTTGTTTTT CCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTTCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAACTTGCGAGAACACATTTTTTGTACTGCATTATGCCCTTAAGTAATAAAACAACCTTGTTTAAGTGTAGTTCAAGCTGCGTTGGC]
[-] EMBL CNS08Y3V [ CAAATTAACTAGGTTCGTTTTTCCCTTTTTCTGCAAGAATTGCTTTTGTTAAGAAGCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGGGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGGTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAACTTGCGAGAACACATTTTTTGTACTGCATTATGCCCTTAAGTAATAAAACAA ]
consensusID : consensus_8581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCATGTATTTTTTTTTCTTCAAATTAACTAGGTTTGTTTTTCCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAAC]
[+] EMBL BM603389 [CCGCCCACGCGTCCGCCCACGCGTCCGCATGTATTTTTTTTTCTTCAAATTAACTAGGTTTGTTTTTCCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAAC]
consensusID : consensus_8581#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence
[GAATGCTCGAGGCAGAATATCGCGACGANTGTAGAATTGCTGGCTGGACGCTGGCCTGAAATGATTTGCAAACACAGGGAAACTAAAACAACCTTAATATACATACACAAGAGGTATAAATACACAAACAAGAACCAGGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGACTGATAGTACAGCCACGAGAACGCGAGGTCTAGCGCAAGAGGTAATGCACATGATAAGCGGTGCGACGTAAAGGCGCGTAAAGCAGTGAATTC]
[+] EMBL BX469717 [GAATGCTCGAGGCAGAATATCGCGACGANTGTAGAATTGCTGGCTGGACGCTGGCCTGAAATGATTTGCAAACACAGGGAAACTAAAACAACCTTAATATACATACACAAGAGGTATAAATACACAAACAAGAACCAGGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGACTGATAGTACAGCCACGAGAACGCGAGGTCTAGCGCAAGAGGTAATGCACATGATAAGCGGTGCGACGTAAAGGCGCGTAAAGCAGTGAATTC]
consensusID : consensus_8581#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence
[CTGGCGGGACGCTGGTGAATGATTGGCAAACACAGGAAACGAAAACAACCTGAACAGACACACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGGTGTGCGACCCACTCCCACGATTGATGATGATAGTAAGCCACGAGAACGCGAGTCTAGCGCAAGAGGGAAGGCACATGATAAGCGGTGCGACCAAA]
[+] EMBL BX609902 [CTGGCGGGACGCTGGTGAATGATTGGCAAACACAGGAAACGAAAACAACCTGAACAGACACACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGGTGTGCGACCCACTCCCACGATTGATGATGATAGTAAGCCACGAGAACGCGAGTCTAGCGCAAGAGGGAAGGCACATGATAAGCGGTGCGACCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 CGNAGGGTTTTTTTACATATTATCTTACGATTGTTCCGGTGTTTATGAATTCGTTTTACT 60
consensus_8581#1 ------------------------------------------------------------
consensus_8581#2 --------------------------------------------------GAATGCTCGA 10
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 ACTTGAAACACAACAAATAACTAGCAATGAATACACACACACACTCTGGCGATGGCGTGG 120
consensus_8581#1 ----------------------------------CCGCCCACGCGTCCGCCCACGCGTCC 26
consensus_8581#2 GGCAGAATAT---CGCGACGANTGTAGAATTGCTGGCTGGACGCTGGCCTGAAATGATTT 67
consensus_8581#3 --------------------------------CTGGCGGGACGCTGGT---GAATGATTG 25
consensus_8581#0 AATGGAAGGCAGGCGTGTGTACGATCGAATTGCTGGCTGGACGCTGGT---GAACGATTT 177
consensus_8581#1 GCATGTATTTTTTTTTCTTCAAATTAACTAGGTTTGTTTTTCCTTTTTCT-GCAAGAATT 85
* * * * * ** *
consensus_8581#2 GCAAACACAGGGAAACTAAAACAACCTTAATATACATACACAAGAGGTATAAATACACAA 127
consensus_8581#3 GCAAACACAGG-AAACGAAAACAACCTGAACAGACACACACAAGAG-TATAAATACACAA 83
consensus_8581#0 GCAAACACAGG-AAACTAAAACAACCTTAATATACATACACAAGAG-TATAAATACACAA 235
consensus_8581#1 GCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAAT-GGCGGACGCGGAC 144
** ** * * * * * * * * * * *
consensus_8581#2 ACAAGAACCAGGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGACTGATAGTACA 187
consensus_8581#3 ACAA-AACCAG-CGAGCAAAGGTGTGCGACCCACTCCCACGATTGATGA-TGATAGTA-A 139
consensus_8581#0 ACAA-AACCAG-CGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGA-TGATAGTA-A 291
consensus_8581#1 GTAGCTCCCTGTCCCCCGGA---CTGTAACCTACATGCACAGGAGAGCAATAATATCATC 201
* ** * * * * ** *** ** * ** * * *** *
consensus_8581#2 GCCACGAGAACG-CGAGGTCTAGCGCAAGAGGTAATGCACATGATAAGCGGTGCGACGTA 246
consensus_8581#3 GCCACGAGAACG-CGAG-TCTAGCGCAAGAGGGAAGGCACATGATAAGCGGTGCGACCAA 197
consensus_8581#0 GCCCCAAGAACG-CGAG-TCTAGCGCAAGAGGTAATGCACATGATAAGCGGTGCGACTAA 349
consensus_8581#1 TCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCAC 261
* * * * * * * *** *** * *** * * **
consensus_8581#2 AAG-GCGCGTAAAGCAGTGAATTC------------------------------------ 269
consensus_8581#3 A----------------------------------------------------------- 198
consensus_8581#0 AGGCGCGTAAACATGAATCAGTGTGCGTGTGTGTTTGTAGTCTCGAACGGTGGGGCCTCA 409
consensus_8581#1 CACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGG 321
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 CTCTGCCGATCGCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGA 469
consensus_8581#1 ACGAAC------------------------------------------------------ 327
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 GGATTAGAAGGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTG 529
consensus_8581#1 ------------------------------------------------------------
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 GTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACA 589
consensus_8581#1 ------------------------------------------------------------
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 ATTTTCTTACATTAATTTTAATCATTATCTCTAACGCGCTTGAGAGCAGGCATCATCGTA 649
consensus_8581#1 ------------------------------------------------------------
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 GACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTATTTTTTTTTCTTCAAATTAACTA 709
consensus_8581#1 ------------------------------------------------------------
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 GGTTTGTTTTTCCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGT 769
consensus_8581#1 ------------------------------------------------------------
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 ACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACA 829
consensus_8581#1 ------------------------------------------------------------
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 TGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGT 889
consensus_8581#1 ------------------------------------------------------------
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 GTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAA 949
consensus_8581#1 ------------------------------------------------------------
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 AGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAACTTGCGAGAACACAT 1009
consensus_8581#1 ------------------------------------------------------------
consensus_8581#2 ------------------------------------------------------------
consensus_8581#3 ------------------------------------------------------------
consensus_8581#0 TTTTTGTACTGCATTATGCCCTTAAGTAATAAAACAACCTTGTTTAAGTGTAGTTCAAGC 1069
consensus_8581#1 ------------------------------------------------------------
consensus_8581#2 ---------
consensus_8581#3 ---------
consensus_8581#0 TGCGTTGGC 1078
consensus_8581#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||