cluster # 860

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Anopheles gambiae
cluster # 860 cluster # 860 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_860#0 length = 852 sequences # 1

consensus_860#1 length = 155 sequences # 1

consensusID : consensus_860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 852
fasta sequence

                              [GCCAAGAATNCGGCACGNTNGACAAATCAACAAGTACTACGCGNGCAGAAGGTACAGGTGCGCATGGGCAACATCGCCCTAGTGCTGCGCGAGATCTGCAAGATCGTTCAGGAGGTGCTGCGTGAGGTGGAGGTACAGGAGCCTAGATTTATCTCTAGCCTGGTCGAATGCAATGGAAGATACGAAGGTCTGGAAGTAATCTCGCCGACGGCATTCGAGGTAGTACTCTACCTGAACCAGATGGGAGTATTCAACTTTGTGGACGATGGGTCACTGCCAGGCGCAGCAGTGCTAAAGCTTAGCGACGGCCGAAAACGCTCCATGTCCTTGTGGGTGGAGTTCATCACCGCGTCCGGCTATTTATCCGCCCGGAAGATCCGGTCCCGGTTTCACACGCTTGTCGCCCAAGCAGTTGAGAAGTGCCCTTACCGGGACATGGTGAAGCTGGTGCCCGACACGACGGAGGTGAAGCTGCGCATCCGCGAACGGTACACCGTCCAGATTACACCCGCCTTCAAGTGTACCGGCATCTGGCCGAGGTCGGCTGCCCATTGGCCCATTCTCAACATACCTTGGGCCCCAACACCGGGCCCCTTGGTTTGCGGGAAGGGTCAAAGACGGAGGGGGTTCGGATTTGGCTTTCCGGAAAGGAGAGGCGGTTATCCTGCAAGGGGCAAGAACAGGCGAAACGTTTAAAGGGGGTTAACGGCCCTTGGGCTTGTTTAAACAACTTTTAACCGAAGGGCCGGAAAGAAAAATTCGGGTTTTGGTNGTTGAAAAAGGGGCGGGANTAACCCCGGGAAAAACACGGGTTGCCTTTAAAGGATTTCCTCTGTAAAAGAAAAGTCTNTA]

[+] EMBL BX468101             [GCCAAGAATNCGGCACGNTNGACAAATCAACAAGTACTACGCGNGCAGAAGGTACAGGTGCGCATGGGCAACATCGCCCTAGTGCTGCGCGAGATCTGCAAGATCGTTCAGGAGGTGCTGCGTGAGGTGGAGGTACAGGAGCCTAGATTTATCTCTAGCCTGGTCGAATGCAATGGAAGATACGAAGGTCTGGAAGTAATCTCGCCGACGGCATTCGAGGTAGTACTCTACCTGAACCAGATGGGAGTATTCAACTTTGTGGACGATGGGTCACTGCCAGGCGCAGCAGTGCTAAAGCTTAGCGACGGCCGAAAACGCTCCATGTCCTTGTGGGTGGAGTTCATCACCGCGTCCGGCTATTTATCCGCCCGGAAGATCCGGTCCCGGTTTCACACGCTTGTCGCCCAAGCAGTTGAGAAGTGCCCTTACCGGGACATGGTGAAGCTGGTGCCCGACACGACGGAGGTGAAGCTGCGCATCCGCGAACGGTACACCGTCCAGATTACACCCGCCTTCAAGTGTACCGGCATCTGGCCGAGGTCGGCTGCCCATTGGCCCATTCTCAACATACCTTGGGCCCCAACACCGGGCCCCTTGGTTTGCGGGAAGGGTCAAAGACGGAGGGGGTTCGGATTTGGCTTTCCGGAAAGGAGAGGCGGTTATCCTGCAAGGGGCAAGAACAGGCGAAACGTTTAAAGGGGGTTAACGGCCCTTGGGCTTGTTTAAACAACTTTTAACCGAAGGGCCGGAAAGAAAAATTCGGGTTTTGGTNGTTGAAAAAGGGGCGGGANTAACCCCGGGAAAAACACGGGTTGCCTTTAAAGGATTTCCTCTGTAAAAGAAAAGTCTNTA]




>consensus_860#0
GCCAAGAATNCGGCACGNTNGACAAATCAACAAGTACTACGCGNGCAGAAGGTACAGGTG
CGCATGGGCAACATCGCCCTAGTGCTGCGCGAGATCTGCAAGATCGTTCAGGAGGTGCTG
CGTGAGGTGGAGGTACAGGAGCCTAGATTTATCTCTAGCCTGGTCGAATGCAATGGAAGA
TACGAAGGTCTGGAAGTAATCTCGCCGACGGCATTCGAGGTAGTACTCTACCTGAACCAG
ATGGGAGTATTCAACTTTGTGGACGATGGGTCACTGCCAGGCGCAGCAGTGCTAAAGCTT
AGCGACGGCCGAAAACGCTCCATGTCCTTGTGGGTGGAGTTCATCACCGCGTCCGGCTAT
TTATCCGCCCGGAAGATCCGGTCCCGGTTTCACACGCTTGTCGCCCAAGCAGTTGAGAAG
TGCCCTTACCGGGACATGGTGAAGCTGGTGCCCGACACGACGGAGGTGAAGCTGCGCATC
CGCGAACGGTACACCGTCCAGATTACACCCGCCTTCAAGTGTACCGGCATCTGGCCGAGG
TCGGCTGCCCATTGGCCCATTCTCAACATACCTTGGGCCCCAACACCGGGCCCCTTGGTT
TGCGGGAAGGGTCAAAGACGGAGGGGGTTCGGATTTGGCTTTCCGGAAAGGAGAGGCGGT
TATCCTGCAAGGGGCAAGAACAGGCGAAACGTTTAAAGGGGGTTAACGGCCCTTGGGCTT
GTTTAAACAACTTTTAACCGAAGGGCCGGAAAGAAAAATTCGGGTTTTGGTNGTTGAAAA
AGGGGCGGGANTAACCCCGGGAAAAACACGGGTTGCCTTTAAAGGATTTCCTCTGTAAAA
GAAAAGTCTNTA

consensusID : consensus_860#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 155
fasta sequence

                              [ACCGCGACAAACTCACACAGACAACTTTGTGGACGAAGGGTCACTGCCAGGCGCAGCAGGGCTAAAGCTTAGCGACGGCTGAAAACGCTCCAGGTCCTTGTGGGTGGAGTTCATCACCGCGTCCGGCTATTTATCCGCCCGGAAGAACCGGTCCC]

[+] EMBL BX618604             [ACCGCGACAAACTCACACAGACAACTTTGTGGACGAAGGGTCACTGCCAGGCGCAGCAGGGCTAAAGCTTAGCGACGGCTGAAAACGCTCCAGGTCCTTGTGGGTGGAGTTCATCACCGCGTCCGGCTATTTATCCGCCCGGAAGAACCGGTCCC]




>consensus_860#1
ACCGCGACAAACTCACACAGACAACTTTGTGGACGAAGGGTCACTGCCAGGCGCAGCAGG
GCTAAAGCTTAGCGACGGCTGAAAACGCTCCAGGTCCTTGTGGGTGGAGTTCATCACCGC
GTCCGGCTATTTATCCGCCCGGAAGAACCGGTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_860#0      GCCAAGAATNCGGCACGNTNGACAAATCAACAAGTACTACGCGNGCAGAAGGTACAGGTG 60
consensus_860#1      ------------------------------------------------------------
                                                                                 

consensus_860#0      CGCATGGGCAACATCGCCCTAGTGCTGCGCGAGATCTGCAAGATCGTTCAGGAGGTGCTG 120
consensus_860#1      ------------------------------------------------------------
                                                                                 

consensus_860#0      CGTGAGGTGGAGGTACAGGAGCCTAGATTTATCTCTAGCCTGGTCGAATGCAATGGAAGA 180
consensus_860#1      ------------------------------------------------------------
                                                                                 

consensus_860#0      TACGAAGGTCTGGAAGTAATCTCGCCGACGGCATTCGAGGTAGTACTCTACCTGAACCAG 240
consensus_860#1      --------------------------------------------------ACCGCGACAA 10
                                                                        * *   ** 

consensus_860#0      ATGGGAGTATTCAACTTTGTGGACGATGGGTCACTGCCAGGCGCAGCAGTGCTAAAGCTT 300
consensus_860#1      ACTCACACAGACAACTTTGTGGACGAAGGGTCACTGCCAGGCGCAGCAGGGCTAAAGCTT 70
                     *       *  *************** ********************** **********

consensus_860#0      AGCGACGGCCGAAAACGCTCCATGTCCTTGTGGGTGGAGTTCATCACCGCGTCCGGCTAT 360
consensus_860#1      AGCGACGGCTGAAAACGCTCCAGGTCCTTGTGGGTGGAGTTCATCACCGCGTCCGGCTAT 130
                     ********* ************ *************************************

consensus_860#0      TTATCCGCCCGGAAGATCCGGTCCCGGTTTCACACGCTTGTCGCCCAAGCAGTTGAGAAG 420
consensus_860#1      TTATCCGCCCGGAAGAACCGGTCCC----------------------------------- 155
                     **************** ********                                   

consensus_860#0      TGCCCTTACCGGGACATGGTGAAGCTGGTGCCCGACACGACGGAGGTGAAGCTGCGCATC 480
consensus_860#1      ------------------------------------------------------------
                                                                                 

consensus_860#0      CGCGAACGGTACACCGTCCAGATTACACCCGCCTTCAAGTGTACCGGCATCTGGCCGAGG 540
consensus_860#1      ------------------------------------------------------------
                                                                                 

consensus_860#0      TCGGCTGCCCATTGGCCCATTCTCAACATACCTTGGGCCCCAACACCGGGCCCCTTGGTT 600
consensus_860#1      ------------------------------------------------------------
                                                                                 

consensus_860#0      TGCGGGAAGGGTCAAAGACGGAGGGGGTTCGGATTTGGCTTTCCGGAAAGGAGAGGCGGT 660
consensus_860#1      ------------------------------------------------------------
                                                                                 

consensus_860#0      TATCCTGCAAGGGGCAAGAACAGGCGAAACGTTTAAAGGGGGTTAACGGCCCTTGGGCTT 720
consensus_860#1      ------------------------------------------------------------
                                                                                 

consensus_860#0      GTTTAAACAACTTTTAACCGAAGGGCCGGAAAGAAAAATTCGGGTTTTGGTNGTTGAAAA 780
consensus_860#1      ------------------------------------------------------------
                                                                                 

consensus_860#0      AGGGGCGGGANTAACCCCGGGAAAAACACGGGTTGCCTTTAAAGGATTTCCTCTGTAAAA 840
consensus_860#1      ------------------------------------------------------------
                                                                                 

consensus_860#0      GAAAAGTCTNTA 852
consensus_860#1      ------------