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Anopheles gambiae
cluster # 8609 cluster # 8609       Sequences # 11       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8609#0 length = 981 sequences # 6  
consensus_8609#1 length = 896 sequences # 2  
consensus_8609#2 length = 757 sequences # 1  
consensus_8609#3 length = 716 sequences # 1  
consensus_8609#4 length = 520 sequences # 1  

consensusID : consensus_8609#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 981
fasta sequence
                              [CCGAAAAGCCTTTACGGTCGAAAAAATATTGAGGCTAACGTACTTGACAAATTCACCAACATTTCACCAAGCACCAAAAACTATTTAATGCTTTACGAATAACTAATGCCATGCCAGACAAACTGATTAATATCTGATACCTTTCAAAACATACTTCTTGAACATGGTTGTACTCTTAGAAAGCGTTGTACTCGTAAAAACAACAA-TTTTTTTTTATTTTAATAATCGTTCCAATTTTAAAATGGAAAGGACCATTGTCATGTAGAAACCCTGTAATGAAATATACAGGAAATTTAACCTTGAGTTCCATCATTTTGATTAGTCCGTCAATCGATAGTTAAATTTGGAAGAATTCGACGGTATGAAATATCATATTAAAAGATGTTCAGTATGTTTTATAGTAATAGGTTCTTTCTATCTTTCAAAATCTTCTATCTGGCATTTA-TTTTTCGCGGTCCAGATT-GAATGTCGCGGTGGGTCAGACTTTTCGACCGCTGGCGTACGTGATACAAATGAATAGTCGTTTTTTGTGCTGCTCGACTTTGTTTAACCTATTGCCGCGAAAAAGATGGCCCTTACACAATCGCGAAAAATTAACAATCGTTAAAAATTAACCAGAGTCGTTAAAATTGCTCGAATTTGGCATCACGAACGCATTGAGTTCTTTTGTTAATTTTCTCGAGTCTAGACCGTTGTTAAATAAACGATCACTAAGAGTGTATGCGATACTAATTAACAGTCGTTTAATTATACTGCTCGAATTTATTCCCTGTGTTTTTTTTTATGTGTCGTTGAGCAGTGGCTAAATATTTGCAAATGTTAAATGTTTGCCACGATATTGAGCAGTGGTTAAATGTTTGCAAAAACAAACGCATGAATGAACAACTAATGAACTCTGTTAAAGCAAAATGAACCTTAAAAGAATGTTAATATGTGTCATTTTTTCGCGATGTCGGCTAATGTTCAAAAGCGACTTAACAT]

[+] EMBL BM620783             [CCGAAAAGCCTTTACGGTCGAAAAAATATTGAGGCTAACGTACTTGACAAATTCACCAACATTTCACCAAGCACCAAAAACTATTTAATGCTTTACGAATAACTAATGCCATGCCAGACAAACTGATTAATATCTGATACCTTTCAAAACATACTTCTTGAACATGGTTGTACTCTTAGAAAGCGTTGTACTCGTAAAAACAACAATTTTTTTTTTATTTTAATAATCGTTCCAATTTTAAAATGGAAAGGACCATTGTCATGTAGAAACCCTGTAATGAAATATACAGGAAATTTAACCTTGAGTTCCATCATTTTGATTAGTCCGTCAATCGATAGTTAAATTTGGAAGAATTCGACGGTATGAAATATCATATTAAAAGATGTTCAGTATGTTTTATAGTAATAGGTTCTTTCTATCTTTCAAAATCTTCTATCTGGCATTTA TTTTTCGCGGTCCAGATT GAATGTCGCGGTGGGTCAGACTTTTCGACCGCTGGCGTACGTGATACAAATGAATAGTCGTTTTTTGTGCTGCTCGACTTTGTTTAACCTATTGCCGCGAAAAAGATGGCCCTTACACAATCGCGAAAAATTAACAATCGTTAAAAATTAACCAGAGTCGTTAAAATTGCTCGAATTTGGCATCACGAACGCATTGAGTTCTTTTGTTAATT                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM650313             [                 cCGAAAAAATATTGAGGCTAACGTACTTGACAAATTCACCAACATTTCACCAAGCACCAAAAACTATTTAATGCTTTACGAATAACTAATGCCATGCCAGACAAACTGATTAATATCTGATACCTTTCAAAACATACTTCTTGAACATGGTTGTACTCTTAGAAAGCGTTGTACTCGTAAAAACAACAA TTTTTTTTTATTTTAATAATCGTTCCAATTTTAAAATGGAAAGGACCATTGTCATGTAGAAACCCTGTAATGAAATATACAGGAAATTTAACCTTGAGTTCCATCATTTTGATTAGTCCGTCAATCGATAGTTAAATTTGGAAGAATTCGACGGTATGAAATATCATATTAAAAGATGTTCAGTATGTTTTATAGTAATAGGTTCTTTCTATCTTTCAAAATCTTCTATCTGGCATTTATTTTTTCGCGGTCCAGATTGGAATGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM629848             [                                                                                                                     ccgAACTGATTAATATCTGATACCTTTCAAAACATACTTCTTGAACATGGTTGTACTCTTAGAAAGCGTTGTACTCGTAAAAACAACAA TTTTTTTTTATTTTAATAATCGTTCCAATTTTAAAATGGAAAGGACCATTGTCAT TCGAAACCTTGTAATGAAATATACAGGAAATTTAACCTTGAGTTCCATCATTTTGATTAGTCCGTCAATCGATAGTTAAATTTGGAAGAATTCGACGGTATGAAATATCATATTAAAAGATGTTCAGTATGTTTTATAGTAATAGGTTCTTTCTATCTTTCAAAATCTTCTATCTGGCATTTA TTTTTCGCGGTCCAGATT GAATGTCGCGGTGGGTCAGACTTTTCGACCGCTGGCGTACGTGATACAAATGAATAGTCGTTTTTTGTGCTGCTCGACTTTGTTTAACCTATTGCCGCGAAAAAGATGGCCCTTACACAATCGCGAAAAATTAACAATCGTTAAAAATTAACCAGAGTCGTTAAAATTGCTCGAATTTGGCATCACGAACGCATTGAGTTCTTTTGTTAATTTTCTCGAGTCTAGACCGTTGTTAAATAAACGATCACTAAGAGTGTATGCGATACTAATTAACAGTCGTTTA                                                                                                                                                                                                                                           ]
[+] EMBL BM606174             [                                                                                                                                                                                                                                                                       ccGAAACCTTGTAATGAAATATACAGGAAATTTAACCTTGAGTTCCATCATTTTGATTAGTCCGTCAATCGATAGTTAAATTTGGAAGAATTCGACGGTATGAAATATCATATTAAAAGATGTTCAGTATGTTTTATAGTAATAGGTTCTTTCTATCTTTCAAAATCTTCTATCTGGCATTTA TTTTTCGCGGTCCAGATT GAATGTCGCGGTGGGTCAGACTTTTCGACCGCTGGCGTACGTGATACAAATGAATAGTCGTTTTTTGTGCTGCTCGACTTTGTTTAACCTATTGCCGCGAAAAAGATGGCCCTTACACAATCGCGAAAAATTAACAATCGTTAAAAATTAACCAGAGTCGTTAAAATTGCTCGAATTTGGCATCACGAACGCATTGAGTTCTTTTGTTAATTTTCTCGAGTCTAGACCGTTGTTAAATAAACGATCACTAAGAGTGTATGCGATACTAATTAACAGTCGTTTAATTATACTGCTCGAATTTATTCCCTGTGTTTTTTTTTATGTGTCGTTGAGCAGTGGCTAAATATTTGCAAATGTTAAATGTTTGCCACGATATTGAGCAGTGGTTAAATGTTTGCAAAAACAAACGCATGAATGAACAACTAATGAACTCTGTTAAAGCAAAATGAACCTTAAAAGAATGTTAATATGTGTCATTTTTTCGCGATGTCGGCTAATGTTCAAAAGCGACTTAACAT]
[+] EMBL BM615957             [                                                                                                                                                                                                                                                                         ccgACCCTGTAATGAAATATACAGGAAATTTAACCTTGAGTTCCATCATTTTGATTAGTCCGTCAATCGATAGTTAAATTTGGAAGAATTCGACGGTATGAAATATCATATTAAAAGATGTTCAGTATGTTTTATAGTAATAGGTTCTTTCTATCTTTCAAAATCTTCTATCTGGCATTTA TTTTTCGCGGTCCAGATT GAATGTCGCGGTGGGTCAGACTTTTCGACCGCTGGCGTACGTGATACAAATGAATAGTCGTTTTTTGTGCTGCTCGACTTTGTTTAACCTATTGCCGCGAAAAAGATGGCCCTTACACAATCGCGAAAAATTAACAATCGTTAAAAATTAACCAGAGTCGTTAAAATTGCTCGAATTTGGCATCACGAACGCATTGAGTTCTTTTGTTAATTTTCTCGAGTCTAGACCGTTGTTAAATAAACGATCACTAAGAGTGTATGCGATACTAATTAACAGTCGTTTAATTATACTGCTCGAATTTATTCCCTGTGTTTTTTTTTATGTGTCGTTGAGCAGTGGCTAAATATTTGCAAATGTTAAATGTTTGCCACGATATTGAGCAGTGGTTAAATGTTTGCAAAAACAAACGCATGAATGAACAACTAATGAACTCTGTTAAAGCAAAATGAACCTTA                                                               ]
[+] EMBL BM618945             [                                                                                                                                                                                                                                                                                    ccGAAATATACAGGAAATTTAACCTTGAGTTCCATCATTTTGATTAGTCCGTCAATCGATAGTTAAATTTGGAAGAATTCGACGGTATGAAATATCATATTAAAAGATGTTCAGTATGTTTTATAGTAATAGGTTCTTTCTATCTTTCAAAATCTTCTATCTGGCATTTA TTTTTCGCGGTCCAGATT GAATGTCGCGGTGGGTCAGACTTTTCGACCGCTGGCGTACGTGATACAAATGAATAGTCGTTTTTTGTGCTGCTCGACTTTGTTTAACCTATTGCCGCGAAAAAGATGGCCCTTACACAATCGCGAAAAATTAACAATCGTTAAAAATTAACCAGAGTCGTTAAAATTGCTCGAATTTGGCATCACGAACGCATTGAGTTCTTTTGTTAATTTTCTCGAGTCTAGACCGTTGTTAAATAAACGATCACTAAGAGTGTATGCGATACTAATTAACAGTCGTTTAATTATACTGCTCGAATTTATTCCCTGTGTTTTTTTTTATGTGTCGTTGAGCAGTGGCTAAATATTTGCAAATGTTAAATGTTTGCCACGATATTGAGCAGTGGTTAAATGTTTGCAAAAACAAACGCATGAATGAACAACTAATGAACTCTGTTAAAGCAAAATGAACCTTAAAAGAATGTTAATATGTGTCA                                          ]


>consensus_8609#0 CCGAAAAGCCTTTACGGTCGAAAAAATATTGAGGCTAACGTACTTGACAAATTCACCAAC ATTTCACCAAGCACCAAAAACTATTTAATGCTTTACGAATAACTAATGCCATGCCAGACA AACTGATTAATATCTGATACCTTTCAAAACATACTTCTTGAACATGGTTGTACTCTTAGA AAGCGTTGTACTCGTAAAAACAACAATTTTTTTTTATTTTAATAATCGTTCCAATTTTAA AATGGAAAGGACCATTGTCATGTAGAAACCCTGTAATGAAATATACAGGAAATTTAACCT TGAGTTCCATCATTTTGATTAGTCCGTCAATCGATAGTTAAATTTGGAAGAATTCGACGG TATGAAATATCATATTAAAAGATGTTCAGTATGTTTTATAGTAATAGGTTCTTTCTATCT TTCAAAATCTTCTATCTGGCATTTATTTTTCGCGGTCCAGATTGAATGTCGCGGTGGGTC AGACTTTTCGACCGCTGGCGTACGTGATACAAATGAATAGTCGTTTTTTGTGCTGCTCGA CTTTGTTTAACCTATTGCCGCGAAAAAGATGGCCCTTACACAATCGCGAAAAATTAACAA TCGTTAAAAATTAACCAGAGTCGTTAAAATTGCTCGAATTTGGCATCACGAACGCATTGA GTTCTTTTGTTAATTTTCTCGAGTCTAGACCGTTGTTAAATAAACGATCACTAAGAGTGT ATGCGATACTAATTAACAGTCGTTTAATTATACTGCTCGAATTTATTCCCTGTGTTTTTT TTTATGTGTCGTTGAGCAGTGGCTAAATATTTGCAAATGTTAAATGTTTGCCACGATATT GAGCAGTGGTTAAATGTTTGCAAAAACAAACGCATGAATGAACAACTAATGAACTCTGTT AAAGCAAAATGAACCTTAAAAGAATGTTAATATGTGTCATTTTTTCGCGATGTCGGCTAA TGTTCAAAAGCGACTTAACAT



consensusID : consensus_8609#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 896
fasta sequence
                              [TGGTCGTAAGGTTGATACCAAACAATTTCCAACAAATCG-TTTGATTAGAACGGTGTGTGATTAATTGATTTTTTTTCATATAGCTGTGTTGAGAACTCACTAACAATAATGTTGGCCGTACGCGGACACTCTTTTCCACTGCAAAGAACTGCAGCGCCGTGCTGGGCTGCCGAAGCAAGCACACGCTGCCGGATTTGCCGTACGATTTCGGCGCTCTCGAGCCGGTCATTTGCCGCGAAATCATGGAGCTTCACCACCAGAAGCATCACAACGCGTACGTCACGAATCTCAACGCGGCGGAGGAACAGCTGCAGGATGCGGTGGCGAACAGGACGTGTCCAAGATTATTCAGCTCGGCAATGCGATCAAGTTTAACGGAGGTGGTCATATTAACCATTCCATTTTCTGGAAGAATCTATCGCCCGACCGCAGCGATCCGTCGGCGGAACTACAGAAAGCGCTGAACCGTGACTTCCAAAATATGGAGAATTTCAAGAAGGAAATGAAAGCAGCCGCCGTTGCTGTGCAGGGCTCCGGTTGGGCATGGTTGGGTTACAACAAAAAGACGAAGCTGCTGCAGATTGCTGCCTGCCCGAATCAGGATCCTTTGGAAGCAACCACTGGTCTTGTTCCACTGTTGGGGATCGATGTGTGGGAGCACGCTTACTATCTGCAGTACAAAAACCTAAGACCCAACTACGTCGATGCCATATTTGACGTGGTCAACTGGAAGGATGTTTCCGAGCGATTGGCAAAAGCCCACTAAGAATTGCAGCACCGTTTAACGGGCAGGCGAATTCAAATCACTAGCACCGGGGCGAGTTGTATAAAAATTGGCCCATTAAATATCCTACAACTGTGAAAAAAAAAAAAAAAAAAAAAAAAAGGCCGCCACA]

[+] EMBL CNS09HV0             [TGGTCGTAAGGTTGATACCAAACAATTTCCAACAAATCG TTTGATTAGAACGGTGTGTGATTAATTGATTTTTTTTCATATAGCTGTGTTGAGAACTCACTAACAATAATGTTGGCCGTACGCGGACACTCTTTTCCACTGCAAAGAACTGCAGCGCCGTGCTGGGCTGCCGAAGCAAGCACACGCTGCCGGATTTGCCGTACGATTTCGGCGCTCTCGAGCCGGTCATTTGCCGCGAAATCATGGAGCTTCACCACCAGAAGCATCACAACGCGTACGTCACGAATCTCAACGCGGCGGAGGAACAGCTGCAGGATGCGGTGGCGAACAGGACGTGTCCAAGATTATTCAGCTCGGCAATGCGATCAAGTTTAACGGAGGTGGTCATATTAACCATTCCATTTTCTGGAAGAATCTATCGCCCGACCGCAGCGATCCGTCGGCGGAACTACAGAAAGCGCTGAACCGTGACTTCCAAAATATGGAGAATTTCAAGAAGGAAATGAAAGCAGCCGCCGTTGCTGTGCAGGGCTCCGGTTGGGCATGGTTGGGTTACAACAAAAAGACGAAGCTGCTGCAGATTGCTGCCTGCCCGAATCAGGATCCTTTGGAAGCAACCACTGGTCTTGTTCCACTGTTGGGGATCGATGTGTGGGAGCACGCTTACTATCTGCAGTACAAAAACCTAAGACCCAACTACGTCGATGCCATATTTGACGTGGTCAACTGGAAGGATGTTTCCGAGCGATTGGCAAAAGCCCACTAAGAATTGCAGCACCGTTTAACGGGCAGGCGAATTCAAATCACTAGCACCGGGGCGAGTTGTATAAAAATTGGCCCATTAAATATCCTACAACTGTGAAAAAAAAAAAAAAAAAAAAAAAAAGGCC      ]
[+] EMBL CNS097YV             [ GGTCGTAAGGTTGATACCAAACAATTTCCAACAAATCGTTTTGATTAGAACGGTGTGTGATTAATTGATTTTTTTTCATATAGCTGTGTTGAGAACTCACTAACAATAATGTTGGCCGTACGCGGAGACTCTTTTCCACTGCAAAGAACTGCAGCGCCGTGCTGGGCTGCCGAAGCAAGCACACGCTGCCGGATTTGCCGTACGATTTCGGCGCTCTCGAGCCGGTCATTTGCCGCGAAATCATGGAGCTTCACCACCAGAAGCATCACAACGCGTACGTCACGAATCTCAACGCGGCGGAGGAACAGCTGCAGGATGCGGTGGCGAACAGGACGTGTCCAAGATTATTCAGCTCGGCAATGCGATCAAGTTTAACGGAGGTGGTCATATTAACCATTCCATTTTCTGGAAGAATCTATCGCCCGACCGCAGCGATCCGTCGGCGGAACTACAGAAAGCGCTGAACCGTGACCTCCAAAATATGGAGAATTTCAAGAAGGAAATGAAAGCAGCCGCCGTTGCTGTGCAGGGCTCCGGTTGGGCATGGTTGGGTTACAACAAAAAGACGAAGCTGCTGCAGATTGCTGCCTGCCCGAATCAGGATCCTTTGGAAGCAACCACTGGTCTTGTTCCACTGTTGGGGATCGATGTGTGGGAGCACGCTTACTATCTGCAGTACAAAAACCTAAGACCCAACTACGTCGATGCCATATTTGACGTGGTCAACTGGAAGGATGTTTCCGAGCGATTGGCAAAAGCCCACTAAGAATTGCAGCACCGTTTAACGGGCAGGCGAATTCAAATCACTAGCACCGGGGCGAGTTGTATAAAAATTGGCCCATTAAATATCCTACAACTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACA]


>consensus_8609#1 TGGTCGTAAGGTTGATACCAAACAATTTCCAACAAATCGTTTGATTAGAACGGTGTGTGA TTAATTGATTTTTTTTCATATAGCTGTGTTGAGAACTCACTAACAATAATGTTGGCCGTA CGCGGACACTCTTTTCCACTGCAAAGAACTGCAGCGCCGTGCTGGGCTGCCGAAGCAAGC ACACGCTGCCGGATTTGCCGTACGATTTCGGCGCTCTCGAGCCGGTCATTTGCCGCGAAA TCATGGAGCTTCACCACCAGAAGCATCACAACGCGTACGTCACGAATCTCAACGCGGCGG AGGAACAGCTGCAGGATGCGGTGGCGAACAGGACGTGTCCAAGATTATTCAGCTCGGCAA TGCGATCAAGTTTAACGGAGGTGGTCATATTAACCATTCCATTTTCTGGAAGAATCTATC GCCCGACCGCAGCGATCCGTCGGCGGAACTACAGAAAGCGCTGAACCGTGACTTCCAAAA TATGGAGAATTTCAAGAAGGAAATGAAAGCAGCCGCCGTTGCTGTGCAGGGCTCCGGTTG GGCATGGTTGGGTTACAACAAAAAGACGAAGCTGCTGCAGATTGCTGCCTGCCCGAATCA GGATCCTTTGGAAGCAACCACTGGTCTTGTTCCACTGTTGGGGATCGATGTGTGGGAGCA CGCTTACTATCTGCAGTACAAAAACCTAAGACCCAACTACGTCGATGCCATATTTGACGT GGTCAACTGGAAGGATGTTTCCGAGCGATTGGCAAAAGCCCACTAAGAATTGCAGCACCG TTTAACGGGCAGGCGAATTCAAATCACTAGCACCGGGGCGAGTTGTATAAAAATTGGCCC ATTAAATATCCTACAACTGTGAAAAAAAAAAAAAAAAAAAAAAAAAGGCCGCCACA



consensusID : consensus_8609#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 757
fasta sequence
                              [GATCCCCCGAGGTTNGAAGCTCTCAGACTTAAATATCGGGAGGTTTCTCTATGATTTTAAATATCATGAAAACGTAAAGAATGGCGAGTATAGTTTCGATTGAGACCAATGCTGAACATTCAACTATTCTTGGAAAGAGATTAGGATACTGTGAAGCTTGTACTGCCAATGCGGCCAAATACACTTGTCCTCGTTGTGATGTAAAAACATGTAGCATGGAGTGTCTGAATATTCATAAAACAGAACTGAAATGTAATGGCATTCGAGACCGCACACAATACATTCCGCTAGTGAAAATGACCAAAATGGATCTAATGAACGATTATTACTTTTTGGAAGATTGTACGAAATTCGTATCAGGACCGTAAACGTGATCAAAGGAACGCGTTCACTTATCACAAAAAAAATCCTCTCCCAAANTATCCACCACTGCACTGCCGCTCCTCTCAAACNAACGCCCTGGCCTCTCCGCGCATCCGCCCGCGCGCACTCTGTACCTAACACGCTCNACTGCTATCAAAACTTTTAGCAAACGGCAAAAAAATACATCCCCTATATGGGATTATATACACACACCTGACAAAAAACACTATTTCTATGGGCCGCTACATCCGCACACTGGGCTCGCTACNTCCCCCCCCCACACCCCCAACACTGCACAACACACCCTACTGCTAGATACTAACTCAGGANCACAAAACCAACTACTCTCACGCGCACAGCCAACTTTCANACAACAAACCCTCATCAGCGCNGC]

[+] EMBL AL932040             [GATCCCCCGAGGTTNGAAGCTCTCAGACTTAAATATCGGGAGGTTTCTCTATGATTTTAAATATCATGAAAACGTAAAGAATGGCGAGTATAGTTTCGATTGAGACCAATGCTGAACATTCAACTATTCTTGGAAAGAGATTAGGATACTGTGAAGCTTGTACTGCCAATGCGGCCAAATACACTTGTCCTCGTTGTGATGTAAAAACATGTAGCATGGAGTGTCTGAATATTCATAAAACAGAACTGAAATGTAATGGCATTCGAGACCGCACACAATACATTCCGCTAGTGAAAATGACCAAAATGGATCTAATGAACGATTATTACTTTTTGGAAGATTGTACGAAATTCGTATCAGGACCGTAAACGTGATCAAAGGAACGCGTTCACTTATCACAAAAAAAATCCTCTCCCAAANTATCCACCACTGCACTGCCGCTCCTCTCAAACNAACGCCCTGGCCTCTCCGCGCATCCGCCCGCGCGCACTCTGTACCTAACACGCTCNACTGCTATCAAAACTTTTAGCAAACGGCAAAAAAATACATCCCCTATATGGGATTATATACACACACCTGACAAAAAACACTATTTCTATGGGCCGCTACATCCGCACACTGGGCTCGCTACNTCCCCCCCCCACACCCCCAACACTGCACAACACACCCTACTGCTAGATACTAACTCAGGANCACAAAACCAACTACTCTCACGCGCACAGCCAACTTTCANACAACAAACCCTCATCAGCGCNGC]


>consensus_8609#2 GATCCCCCGAGGTTNGAAGCTCTCAGACTTAAATATCGGGAGGTTTCTCTATGATTTTAA ATATCATGAAAACGTAAAGAATGGCGAGTATAGTTTCGATTGAGACCAATGCTGAACATT CAACTATTCTTGGAAAGAGATTAGGATACTGTGAAGCTTGTACTGCCAATGCGGCCAAAT ACACTTGTCCTCGTTGTGATGTAAAAACATGTAGCATGGAGTGTCTGAATATTCATAAAA CAGAACTGAAATGTAATGGCATTCGAGACCGCACACAATACATTCCGCTAGTGAAAATGA CCAAAATGGATCTAATGAACGATTATTACTTTTTGGAAGATTGTACGAAATTCGTATCAG GACCGTAAACGTGATCAAAGGAACGCGTTCACTTATCACAAAAAAAATCCTCTCCCAAAN TATCCACCACTGCACTGCCGCTCCTCTCAAACNAACGCCCTGGCCTCTCCGCGCATCCGC CCGCGCGCACTCTGTACCTAACACGCTCNACTGCTATCAAAACTTTTAGCAAACGGCAAA AAAATACATCCCCTATATGGGATTATATACACACACCTGACAAAAAACACTATTTCTATG GGCCGCTACATCCGCACACTGGGCTCGCTACNTCCCCCCCCCACACCCCCAACACTGCAC AACACACCCTACTGCTAGATACTAACTCAGGANCACAAAACCAACTACTCTCACGCGCAC AGCCAACTTTCANACAACAAACCCTCATCAGCGCNGC



consensusID : consensus_8609#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 716
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGTACGGCTTAAAATGGACAAGCTAGCAAAAAAAAAGAAGGCTCTCACACTACTGGCTCTAGAAACAGTCGGTGCGTTATCGTTTGCAGTCACACTGAACACACTGAACGCTCCCCGAGAAATTAATTACTGCCTATTCTAATCAGTGCACATCGGTCAATCGGGACTTGCCGGTAAACAGATCGCGCCTAGCGCCTAAAATAGACGAAAACGAAATCAAACAAGAAATTCCGAAACAAACAACTGACCGTGAGCATCATGCATGCAAGGGAACTGTGATAGGAGACAACGCCGTTTTTACTACGTGCCGCCAACCAACGGATGGATGAATCTGATGCCCCCTATCGCCCGCAATGTAGCCGATTAAGTTAAACGTTAGCCTCCGGAGACCCACAAACAGTGGGTCGTTATTTAACGCGTATCTGGTTTGGCTTGGTGGCGATGGTGATAATCAGCGTACCGCAACGAGTCATCTCAATGCCATGCACCAGTAACTCCGATGGGCAAACAGTGAATACCATAAGAACGGATCGACCGACTGTAGCGGGATCAAGATCTATGGGTGTCCCCGTTGCTGCACCAACAGTAGCTTCGTCGACGCCATTAGCAATCAAAAAGGATCTCTTTTATGTCTCGTGGCTGGGGTGCCTCCGGTATGCCATTTTCAATGTTTTACCTTAACCATTACACC]

[+] EMBL BM577300             [CCGCCCACGCGTCCGCCCACGCGTCCGTACGGCTTAAAATGGACAAGCTAGCAAAAAAAAAGAAGGCTCTCACACTACTGGCTCTAGAAACAGTCGGTGCGTTATCGTTTGCAGTCACACTGAACACACTGAACGCTCCCCGAGAAATTAATTACTGCCTATTCTAATCAGTGCACATCGGTCAATCGGGACTTGCCGGTAAACAGATCGCGCCTAGCGCCTAAAATAGACGAAAACGAAATCAAACAAGAAATTCCGAAACAAACAACTGACCGTGAGCATCATGCATGCAAGGGAACTGTGATAGGAGACAACGCCGTTTTTACTACGTGCCGCCAACCAACGGATGGATGAATCTGATGCCCCCTATCGCCCGCAATGTAGCCGATTAAGTTAAACGTTAGCCTCCGGAGACCCACAAACAGTGGGTCGTTATTTAACGCGTATCTGGTTTGGCTTGGTGGCGATGGTGATAATCAGCGTACCGCAACGAGTCATCTCAATGCCATGCACCAGTAACTCCGATGGGCAAACAGTGAATACCATAAGAACGGATCGACCGACTGTAGCGGGATCAAGATCTATGGGTGTCCCCGTTGCTGCACCAACAGTAGCTTCGTCGACGCCATTAGCAATCAAAAAGGATCTCTTTTATGTCTCGTGGCTGGGGTGCCTCCGGTATGCCATTTTCAATGTTTTACCTTAACCATTACACC]


>consensus_8609#3 CCGCCCACGCGTCCGCCCACGCGTCCGTACGGCTTAAAATGGACAAGCTAGCAAAAAAAA AGAAGGCTCTCACACTACTGGCTCTAGAAACAGTCGGTGCGTTATCGTTTGCAGTCACAC TGAACACACTGAACGCTCCCCGAGAAATTAATTACTGCCTATTCTAATCAGTGCACATCG GTCAATCGGGACTTGCCGGTAAACAGATCGCGCCTAGCGCCTAAAATAGACGAAAACGAA ATCAAACAAGAAATTCCGAAACAAACAACTGACCGTGAGCATCATGCATGCAAGGGAACT GTGATAGGAGACAACGCCGTTTTTACTACGTGCCGCCAACCAACGGATGGATGAATCTGA TGCCCCCTATCGCCCGCAATGTAGCCGATTAAGTTAAACGTTAGCCTCCGGAGACCCACA AACAGTGGGTCGTTATTTAACGCGTATCTGGTTTGGCTTGGTGGCGATGGTGATAATCAG CGTACCGCAACGAGTCATCTCAATGCCATGCACCAGTAACTCCGATGGGCAAACAGTGAA TACCATAAGAACGGATCGACCGACTGTAGCGGGATCAAGATCTATGGGTGTCCCCGTTGC TGCACCAACAGTAGCTTCGTCGACGCCATTAGCAATCAAAAAGGATCTCTTTTATGTCTC GTGGCTGGGGTGCCTCCGGTATGCCATTTTCAATGTTTTACCTTAACCATTACACC



consensusID : consensus_8609#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence
                              [ATCGCGCACGAGGTNGCAGTCTAACGTTGTTACTGTGCAAATGGTGACTGCCAAGAAGCAGAAAAAGGCTTTGGAGAGCATCAACTCTCGCCTGGCGCTGGTGATGAAATCTGGCAAGTCCTGCCTGGGCTACAAGCAGACTCTGCGTACCCTCCGCCAGGGAAAGGCCAAGCTGGTCATCATTGCCAACAACACGCCGCACCGTCCGAGTCAAGTAGGCATGTCCGCGCGCGGGGCGACCGNAGTTACCGGAGAAGGTAGAGGTTTTCCTTTAGTGGATGCGTACCGTTTGATGTGGGAATTCAGTATGGGAGCTCGAGTTTGGTGGANCTGGAGGAAAGGTTAGTGGTGTAGNGTCNCCACGGGAGGCGTGAACGTTCACGTCAAGGCGTGACCCCNGGACAGTGGTGGGATGGAAGCCCGATTTTGGGAGAGACANCGCATCAATGGGAACGNTGAATCCATTATGTAGAGGCGAGAAGGGTGCGTTCANCGTGCGGGGGACAAGGTACGGTANCCG]

[+] EMBL BX469309             [ATCGCGCACGAGGTNGCAGTCTAACGTTGTTACTGTGCAAATGGTGACTGCCAAGAAGCAGAAAAAGGCTTTGGAGAGCATCAACTCTCGCCTGGCGCTGGTGATGAAATCTGGCAAGTCCTGCCTGGGCTACAAGCAGACTCTGCGTACCCTCCGCCAGGGAAAGGCCAAGCTGGTCATCATTGCCAACAACACGCCGCACCGTCCGAGTCAAGTAGGCATGTCCGCGCGCGGGGCGACCGNAGTTACCGGAGAAGGTAGAGGTTTTCCTTTAGTGGATGCGTACCGTTTGATGTGGGAATTCAGTATGGGAGCTCGAGTTTGGTGGANCTGGAGGAAAGGTTAGTGGTGTAGNGTCNCCACGGGAGGCGTGAACGTTCACGTCAAGGCGTGACCCCNGGACAGTGGTGGGATGGAAGCCCGATTTTGGGAGAGACANCGCATCAATGGGAACGNTGAATCCATTATGTAGAGGCGAGAAGGGTGCGTTCANCGTGCGGGGGACAAGGTACGGTANCCG]


>consensus_8609#4 ATCGCGCACGAGGTNGCAGTCTAACGTTGTTACTGTGCAAATGGTGACTGCCAAGAAGCA GAAAAAGGCTTTGGAGAGCATCAACTCTCGCCTGGCGCTGGTGATGAAATCTGGCAAGTC CTGCCTGGGCTACAAGCAGACTCTGCGTACCCTCCGCCAGGGAAAGGCCAAGCTGGTCAT CATTGCCAACAACACGCCGCACCGTCCGAGTCAAGTAGGCATGTCCGCGCGCGGGGCGAC CGNAGTTACCGGAGAAGGTAGAGGTTTTCCTTTAGTGGATGCGTACCGTTTGATGTGGGA ATTCAGTATGGGAGCTCGAGTTTGGTGGANCTGGAGGAAAGGTTAGTGGTGTAGNGTCNC CACGGGAGGCGTGAACGTTCACGTCAAGGCGTGACCCCNGGACAGTGGTGGGATGGAAGC CCGATTTTGGGAGAGACANCGCATCAATGGGAACGNTGAATCCATTATGTAGAGGCGAGA AGGGTGCGTTCANCGTGCGGGGGACAAGGTACGGTANCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8609#0      CCGAAAAGCCTTTACGGTCGAAAAAATATTGAGGCTAACGTACTTGACAAATTCACCAAC 60
consensus_8609#1      -----------------------TGGTCGTAAGGTTGA--TACCAAACAATTT--CCAAC 33
consensus_8609#4      ------------------------------------------------------------
consensus_8609#3      ------------------------------------------------------------
consensus_8609#2      ------------------------------------------------------------
                                                                                  

consensus_8609#0      ATTTCACCAAGCACCAAAAACTATTTAATGCTTTACGAATAACTAATGCCATGCCAGACA 120
consensus_8609#1      AAATCGTTTGAT-----------TAGAACGGTGTGTGATTAATTGATTTTTTTTCATATA 82
consensus_8609#4      ------------------------------------------------------------
consensus_8609#3      ------------------------------------------------------------
consensus_8609#2      --------------------------------------------------GATCCCCCGA 10
                                                                                  

consensus_8609#0      AACTGATTAATATCTGATACCTTTCAAAACATACTTCTTGAACATGGTTGTACTCTTAGA 180
consensus_8609#1      GCTGTGTTGAGAACTCA---CTAACAATA-ATGTTGGCCGTACGCGGACACTCTTTTCCA 138
consensus_8609#4      ------------------------------------------------------------
consensus_8609#3      -----------------------------------------CCGCCCACGCGTCCGCCCA 19
consensus_8609#2      GGTTNGAAGCTCTCAGACTTAAATATCGGGAGGTTTCTCTATGATTTTAAATATCATGAA 70
                                                                                  

consensus_8609#0      AAGCGTTGTACTCGTAAAAACAACAATTTTTTTTTATTTTAATAATCGTT-CCAATTTTA 239
consensus_8609#1      CTGCAAAGAACT-GCAGCGCCGTGCTGGGCTGCCGAAGCAAGCACACGCTGCCGGATTTG 197
consensus_8609#4      ------------------------------------------------------------
consensus_8609#3      CGCGTCCGTACGGCTTAAAATGGACAAGCTAGCAAAAAAAAAGAAGGCTCTCACACTACT 79
consensus_8609#2      AACGTAAAGAATGGCGAGTATAGTTTCGATTGAGACCAATGCTGAACATTCAACTATTCT 130
                                                                                  

consensus_8609#0      AAATG-GAAAGGACCATTGTCATGTAGAAACCCTGTAATGAAATATACAGGAAATTTAAC 298
consensus_8609#1      CCGTACGATTTCGGCGCTCTCGAGCCGGTCATTTGCCGCGAAAT---CATGGAGCTTCAC 254
consensus_8609#4      -----------------------------------------------------ATCGCGC 7
consensus_8609#3      GGCTCTAGAAACAGTCGGTGCGTTATCGTTTGCAGTCACACTGAACACACTGAACGCTCC 139
consensus_8609#2      TGGAAAGAGATTAGGATACTGTGAAGCTTGTACTGCCAATGCGGCCAAATACACTTGTCC 190
                                                                                 *

consensus_8609#0      CTTGAGTTCCATCATTTTG--ATTAGTCCGTCAATCGATAGTTAAATTTGGAAGAATTCG 356
consensus_8609#1      CACCAGAAGCATCACAACG--CGTACGTCACGAATCTCAACGCGGCGGAGGAACAGCT-- 310
consensus_8609#4      ACGAGGTNGCAGTCTAACGTTGTTACTGTGCAAATGGTGACTGCCAAGAAGCAGAAAAAG 67
consensus_8609#3      CCGAGAAATTAAT-TACTG--CCTATTCTAATCAGTGC-ACATCGGTCAATCGGGACTTG 195
consensus_8609#2      TCGTTGTGATGTAAAAACAT-GTAGCATGGAGTGTCTGAATATTCATAAAACAGAACTGA 249
                                                             *                    

consensus_8609#0      ACGGTATGAAATATCATATTAAAAGATGTTCAGTATGT----TTTATAGTAATAGGTTCT 412
consensus_8609#1      GCAGGATGCGGTGGCG-AACAGGACGTGTCCAAGATTA----TTCAGCTCGGCAATGCGA 365
consensus_8609#4      GCTTTGGAGAGCATCA-ACTCTCGCCTGGCGCTGGTGA----TGAAATCTGGCAAGTCCT 122
consensus_8609#3      CCGGTAAACAGATCGCGCCTAGCGCCTAAAATAGACGAA-AACGAAATCAAACAAGAAAT 254
consensus_8609#2      AATGTAATGGCATTCGAGACCGCACACAATACATTCCGCTAGTGAAAATGACCAAAATGG 309
                                                                   *       *      

consensus_8609#0      TTCTATCTTTCAAAATCTTCTATCTGGCATTTATTTTTCGCGGTCCAGATTGAATGTCGC 472
consensus_8609#1      TCAAGTTTAACGGAGGTGGTCAT-----ATTAACCATTCCATTTTCTGGAAGAATCTATC 420
consensus_8609#4      GCCTGGGCTACA-AGCAGACTCT-----GCGTACCCTCCG----CCAGG--GAAAGGCCA 170
consensus_8609#3      TCCGAAACAA-ACAACTGACCGTGAGCATCATGCATGCAAGGGAACTGTGATAGGAGACA 313
consensus_8609#2      ATCTAATGAACGATTATTACTTTTTGGAAGAT-TGTACGAAATTCGTATCAGGACCGTAA 368
                                            *                                     

consensus_8609#0      GGTGGGTCAGACTTTTCGACCGCTGGCGTACG--TGATACAAATGAATAGTCG-TTTTT- 528
consensus_8609#1      GCCCGACCGCAGCGATC---CGTCGGCGGAAC--TACAGAAAGCGCTGAACCG-TGACT- 473
consensus_8609#4      AGCTGGTCATCATTGCCAACAACACGCCGCAC--CGTCCGAGTCAAGTAGGCA-TGTCCG 227
consensus_8609#3      ACGCCGTTTTTACTACGTGCCGCCAACCAACGGATGGATGAATCTGATGCCCC-CTATCG 372
consensus_8609#2      ACGTGATCAAAGGAACG---CGTTCACTTATCACAAAAAAAATCCTCTCCCAAANTATCC 425
                                                *             *                   

consensus_8609#0      TGTGCTGCTCGACTTTGTTTAACCTATTGCCGCGAAAAAGATGGCCCTTACACAATCGCG 588
consensus_8609#1      TCCAAAATATGGAGAATTTCAA--GAAGGAAATGAAAGCAGCCGCCGTTGCTGTGCAGGG 531
consensus_8609#4      CGCGCGGGGCGACCGNAGTTAC----CGGAGAAGGTAGAGGTTTTCCTTTAGTGGATGCG 283
consensus_8609#3      CCCGCAATGTAGCCGA--TTAAGTTAAACGTTAGCCTCCGGAGACCCACAAACAGTGGGT 430
consensus_8609#2      ACCACTGCACTGCCGCTCCTCTCAAACNAACGCCCTGGCCTCTCCGCGCATCCGCCCGCG 485
                                                                               *  

consensus_8609#0      AAA-AATTAACAATCGTTAAAAATTAACCAGAGTCGTTAAAATTGCTCGAATTTGGCATC 647
consensus_8609#1      CTCCGGTTGGGCATGGTTGGGTTACAACAAAAA--GACGAAGCTGCTGCAGATTGCTGCC 589
consensus_8609#4      TACCGTTTGA----TGTGGGAATTCAGTATGGGAGCTCGAGTTTGGTGGANCTGGAGGAA 339
consensus_8609#3      CGTTATTTAACGCGTATCTGGTTTGGCTTGGTGGCGATGGTGATAATCAGCGTACCGCAA 490
consensus_8609#2      CGC-ACTCTGTACCTAACACGCTCNACT-GCTATCAAAACTTTTAGCAAACGGCAAAAAA 543
                            *                                    *                

consensus_8609#0      ACGAACGCATTGAGTTCTTTTGTTAATTTTCTCGAGTCTAGA-CCGTTGTTAA----ATA 702
consensus_8609#1      -TGCCCGAATCAGGATCCTTTGGAAGCAACCACTGGTCTTGTTCCACTGTTGG----G-- 642
consensus_8609#4      AGGTTAGTGGTGTAGNGTCNCCACGGGAGGCGTGAACGTTCA--CGTCAAGGC----GT- 392
consensus_8609#3      CGAGTCATCTCAATGCCATGCACCAGTAACTCCGATGGGCAAACAGTGAATACCATAAGA 550
consensus_8609#2      ATACATCCCCTATATGGGATTATATACACACACCTGACAAAAAACACTATTTCTATGGGC 603
                                                                                  

consensus_8609#0      AACGATCACTAAGAGTGTA-TGCGATACTAATTAACAGTCGTTTAATTATACTGCTCGA- 760
consensus_8609#1      ---GATCGATGTGTGGGAG-CACGCTTACTATCTGCAGT-ACAAAAACCTAAGACCCAA- 696
consensus_8609#4      ---GACCCCNGGACAGTGG-TGGGATGGAAGCCCG-ATTTTGGGAGAGACANCGCATCA- 446
consensus_8609#3      ACGGATCGACCGACTGTAG-CGGGATCAAGATCTATGGG-TGTCCCCGTTGCTGCACCA- 607
consensus_8609#2      CGCTACATCCGCACACTGGGCTCGCTACNTCCCCCCCCCACACCCCCAACACTGCACAAC 663
                          *                  * *                            *   * 

consensus_8609#0      ATTTATTCCCTGTGTTTTTTT--TTATGTGTCGTTGAGCAGT-GGCTAAATATTTGCAAA 817
consensus_8609#1      CTACGT---CGATGCCATATT--TGACGTG--GTCAACTGGAAGGATGTTTCCGAGCGAT 749
consensus_8609#4      ATGGGA--ACGNTGA-ATCCA--TTATGTAGAGGCGAGAAGGGTGCGTTCANCGTGCGGG 501
consensus_8609#3      ACAGTAGCTTCGTCGACGCCA--TTAGCAATCAAAAAGGATCTCTTTTATGTCTCGTGGC 665
consensus_8609#2      ACACCCTACTGCTAGATACTAACTCAGGANCACAAAACCAACTACTCTCACGCGCACAGC 723
                                  *          * *          *                       

consensus_8609#0      TGTTAAATGTTTGCCACGATATTGAGCAGTGGTTAAATGTTTGCAAAAACAAACGCATGA 877
consensus_8609#1      TGGCAAAAGCCCACTAAGAATTGCAGCACCGTTTAA-----CGGGCAGGCGAATTCA--A 802
consensus_8609#4      GGACAAG-GTACGGTANCCG---------------------------------------- 520
consensus_8609#3      TGGGGTGCCTCCGGTATGCCATTTTCAATGTTTTACCTTAACCATTACACC--------- 716
consensus_8609#2      CAACTTTCANACAACAAACCCTCATCAGCGCNGC-------------------------- 757
                                     *                                            

consensus_8609#0      ATGAACAACTAATGAACTCTGTTAAAGCAAAATGAACCTTAAAAGAATGTTAATATGTGT 937
consensus_8609#1      ATCACTAGC-ACCGGGGCGAGTTGTATAAAAATTGGCCCATTAAATATCCTA-------- 853
consensus_8609#4      ------------------------------------------------------------
consensus_8609#3      ------------------------------------------------------------
consensus_8609#2      ------------------------------------------------------------
                                                                                  

consensus_8609#0      CATTTTTTCGCGATGTCGGCTAATGTTCAAAAGCGACTTAACAT 981
consensus_8609#1      CAACTGTGAAAAAAAAAAAAAAAAAAAAAAAAAGGCCGCCACA- 896
consensus_8609#4      --------------------------------------------
consensus_8609#3      --------------------------------------------
consensus_8609#2      --------------------------------------------
                                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)