cluster # 861

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Anopheles gambiae
cluster # 861 cluster # 861 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_861#0 length = 527 sequences # 1

consensus_861#1 length = 473 sequences # 1

consensusID : consensus_861#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [CCGCGGACGCGTGGGTCTAGATGTGGCATCGAACGAATCAGAAAGTGTGTTCTATGGGACCGCATCCGAGGATGGGCTACTGTCGGACGACGACGTCTCCAAATGTTCCTCCAGCAATGCCACCGACAATGCTTCTTCCTACTCCACCGCGGAAGTGCCGGAAGGGTGTCGGATGGTCGAAATCAACAAGGACGGTGCCGGGCTGGGCTTCTCGATCGAGGGCGGCTACGATTCACCCGCCGGCAACAAGTCACTCATCATCAAGAAGATCTTTATGGGTGGTGCCGCCGAAAAGTCTGGCCTGCTCCGTGCCGGCGAACAGATTGTTGCCATTAATGATATCTCGATCGCGAAGATGACGCGGATACAGGTGTGGAACATGATGAATAAGCTGCCGAACGGTGGCGTGCGCATTACGCTCAAGTAAGCGAGAGGGAAAAAGAGTGGCCACACTCACCATCCTTGTACACACACACATATCCTTCTGTTACTGGTTAGTGAACGTACTATTAACGATACTTTATACG]

[+] EMBL BM616609             [CCGCGGACGCGTGGGTCTAGATGTGGCATCGAACGAATCAGAAAGTGTGTTCTATGGGACCGCATCCGAGGATGGGCTACTGTCGGACGACGACGTCTCCAAATGTTCCTCCAGCAATGCCACCGACAATGCTTCTTCCTACTCCACCGCGGAAGTGCCGGAAGGGTGTCGGATGGTCGAAATCAACAAGGACGGTGCCGGGCTGGGCTTCTCGATCGAGGGCGGCTACGATTCACCCGCCGGCAACAAGTCACTCATCATCAAGAAGATCTTTATGGGTGGTGCCGCCGAAAAGTCTGGCCTGCTCCGTGCCGGCGAACAGATTGTTGCCATTAATGATATCTCGATCGCGAAGATGACGCGGATACAGGTGTGGAACATGATGAATAAGCTGCCGAACGGTGGCGTGCGCATTACGCTCAAGTAAGCGAGAGGGAAAAAGAGTGGCCACACTCACCATCCTTGTACACACACACATATCCTTCTGTTACTGGTTAGTGAACGTACTATTAACGATACTTTATACG]




>consensus_861#0
CCGCGGACGCGTGGGTCTAGATGTGGCATCGAACGAATCAGAAAGTGTGTTCTATGGGAC
CGCATCCGAGGATGGGCTACTGTCGGACGACGACGTCTCCAAATGTTCCTCCAGCAATGC
CACCGACAATGCTTCTTCCTACTCCACCGCGGAAGTGCCGGAAGGGTGTCGGATGGTCGA
AATCAACAAGGACGGTGCCGGGCTGGGCTTCTCGATCGAGGGCGGCTACGATTCACCCGC
CGGCAACAAGTCACTCATCATCAAGAAGATCTTTATGGGTGGTGCCGCCGAAAAGTCTGG
CCTGCTCCGTGCCGGCGAACAGATTGTTGCCATTAATGATATCTCGATCGCGAAGATGAC
GCGGATACAGGTGTGGAACATGATGAATAAGCTGCCGAACGGTGGCGTGCGCATTACGCT
CAAGTAAGCGAGAGGGAAAAAGAGTGGCCACACTCACCATCCTTGTACACACACACATAT
CCTTCTGTTACTGGTTAGTGAACGTACTATTAACGATACTTTATACG

consensusID : consensus_861#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [ACCCCGGACCGGGACGGACGGGTGAGAAAGGGCGACCGCATCCTGTCCATCAACGGTCTCAGCATGCGGGGCCTCACGCATCGCGAGTCTCACAGCGTACTTAAGACACCACGGCCGGAAGTGGTCATGGTGATCACCCGCTCGAAATCGCTCGTACTCGACACGCTCACGAAGCTGAAGCGACCCTCGATGGGTTCGCTCAGCTCGCTGGCTGAGAAGAGCGAAATTGCCACCGAGTACGAGCGGAAGTTGAAGATCCAGCACAAAGCGTCCCGTTCGCTGGATCTGGACCATCTAGATGTGGCATCGAACGAAGAAAGTGTGTTCGATGGGACCGCATCCGAGGATGGGCTACTGTCGGCCGACGACGTCTCCAAATGTTCCGCCAGCAATGCCACCGACAAAGCTTCTTCCTACTCCACCGCGGAAGTGCCGGAAGGGTGTCGGAAGGACGAAATCAACAAGGACGGTGC]

[+] EMBL BX614423             [ACCCCGGACCGGGACGGACGGGTGAGAAAGGGCGACCGCATCCTGTCCATCAACGGTCTCAGCATGCGGGGCCTCACGCATCGCGAGTCTCACAGCGTACTTAAGACACCACGGCCGGAAGTGGTCATGGTGATCACCCGCTCGAAATCGCTCGTACTCGACACGCTCACGAAGCTGAAGCGACCCTCGATGGGTTCGCTCAGCTCGCTGGCTGAGAAGAGCGAAATTGCCACCGAGTACGAGCGGAAGTTGAAGATCCAGCACAAAGCGTCCCGTTCGCTGGATCTGGACCATCTAGATGTGGCATCGAACGAAGAAAGTGTGTTCGATGGGACCGCATCCGAGGATGGGCTACTGTCGGCCGACGACGTCTCCAAATGTTCCGCCAGCAATGCCACCGACAAAGCTTCTTCCTACTCCACCGCGGAAGTGCCGGAAGGGTGTCGGAAGGACGAAATCAACAAGGACGGTGC]




>consensus_861#1
ACCCCGGACCGGGACGGACGGGTGAGAAAGGGCGACCGCATCCTGTCCATCAACGGTCTC
AGCATGCGGGGCCTCACGCATCGCGAGTCTCACAGCGTACTTAAGACACCACGGCCGGAA
GTGGTCATGGTGATCACCCGCTCGAAATCGCTCGTACTCGACACGCTCACGAAGCTGAAG
CGACCCTCGATGGGTTCGCTCAGCTCGCTGGCTGAGAAGAGCGAAATTGCCACCGAGTAC
GAGCGGAAGTTGAAGATCCAGCACAAAGCGTCCCGTTCGCTGGATCTGGACCATCTAGAT
GTGGCATCGAACGAAGAAAGTGTGTTCGATGGGACCGCATCCGAGGATGGGCTACTGTCG
GCCGACGACGTCTCCAAATGTTCCGCCAGCAATGCCACCGACAAAGCTTCTTCCTACTCC
ACCGCGGAAGTGCCGGAAGGGTGTCGGAAGGACGAAATCAACAAGGACGGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_861#0      CCGCGGACGCGTGGGTCTAGATGTGGCATCGAACGAATCAGAAAGTGTGTTCTATGGGAC 60
consensus_861#1      ------ACCC-CGGACCGGGACGGACGGGTGA--GAAAGGGCGACCGCATCCTGTCCATC 51
                           ** *  **  *  ** *       **  ***   *  *  *  * ** *    *

consensus_861#0      CGCA-TCCGAGGATG-GGCTACTGTCGGACGACGACGTCTCCAAATGTTCCTCCAGCAAT 118
consensus_861#1      AACGGTCTCAGCATGCGGGGCCTCACGCATCGCGA-GTCTCACAGCGTACTTAAGACACC 110
                       *  **  ** *** **   **  ** *   *** *****  *  ** * *    **  

consensus_861#0      GCCACCGACAATGCTTCTTCCTACTCCACCGCGGAAGTGCCGGAAGGGTGTCGGATGGTC 178
consensus_861#1      ACGGCCGGAAGTGGT-CATGGTGATCACCCGC-------TCGAAATCGC-TCGTAC--TC 159
                      *  ***  * ** * * *  *  **  ****        ** **  *  *** *   **

consensus_861#0      GAAATCAACAAGGACGGTGCCGGGCTGGGCTTCTCGATCGAGGGCGGCTACGATTCACCC 238
consensus_861#1      GACACGCTCACGAA----GCTGAA--GCGACCCTCGAT--GGGTTCGCT-CAGCTCGCTG 210
                     ** *    ** * *    ** *    * *   ******   **   *** *   ** *  

consensus_861#0      GCCGGCAACAAGTCACTCATCATCAAGAAGATCTTTATGGGTGGTGCCGCCGAAAAGTCT 298
consensus_861#1      GCTGAGAAGAGCGAAATTGCCACCGAG--------TACGAGCGGAA--GTTGAAGA-TCC 259
                     ** *  ** *    * *   ** * **        ** * * **    *  *** * ** 

consensus_861#0      GGCCTGCTCCGTGCCGGCGAACAGATTGTTGCCATT--AATGATATCTCGATCGCGAAGA 356
consensus_861#1      AGCACAAAGCGTCCCGTTCGCTGGATCTGGACCATCTAGATGTGGCATCGA--ACGAAGA 317
                      **      *** ***       ***     ****    ***     ****   ******

consensus_861#0      TGACGCGGATACAGGTGTGGAACATGATGAATAAGCTGCCGAACGGTGGCGTGCGCATTA 416
consensus_861#1      AAGTGTGTTCGATGGGACCGCATCCGA-GGATGGGCTACTGTCGGCCGACG---ACGTC- 372
                         * *      **    * *   ** * **  *** * *   *  * **    * *  

consensus_861#0      CGCTCAAGTAAGCGAGAGGGAAAAAGAGTGGCCACACTCACCATCCTTGTACACACACAC 476
consensus_861#1      --TCCAAATGTTCCGCCAGCAATGCCACCGACAAAGCTTCTTCCTACTCCAC-CGCGGAA 429
                         *** *   *     * **    *  * * *  **         *  ** * *  * 

consensus_861#0      ATATCCTTCTGTTACTGGTTAG-TGAACGTACTATTAACGATACTTTATACG 527
consensus_861#1      GTGCCGGAAGGGTGTCGGAAGGACGAAATCAACAAGGACGGTGC-------- 473
                      *  *     * *   **   *  ***   *  *   *** * *