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Anopheles gambiae
cluster # 8612 cluster # 8612       Sequences # 11       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8612#0 length = 2017 sequences # 9  
 consensus_8612#1 length = 846 sequences # 1  
consensus_8612#2 length = 688 sequences # 1  
consensusID : consensus_8612#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2017
fasta sequence 
                              [TTTTTTGTAGAGGACACCGTTCCGGGATAGTGCGGAACGGCTAAATAAAATGGGTTTATTA-TTTAACGCTATCTCACATCGCGTACAGAGCAGCTTACTCGTACTTGACCTTCTTCAGCTGTTTCCGATCGGTAATGTGCTTAATTTTCAGCTTGCCCTCCTTCTCCTTGTTGAGCGTCTTGAAGTGGCCCATTCCACGGTTACCGGGTCGCCGCTCGGAGTTGTGCAGCTTGAAGCTCTTGCCAAAGTCAACGTACGGTGGCTGGGTGAAGCCAAAGTTCTTCGCCACCTGCACCAGATCGAGATTGGCTATGTTGAACACGTCCTTCATGTGGTGCCCTTCGTACGCACGCACGTACGTCTTGAACGCCAGCTTGCCCGACTGGTTCAGGATATAGTTCTTCGCCATCAAATTCTCGAGCTGCAGCTGAATGTCCGCTATTTTGCTCCACGAGAACTCGAACTCGTTCAGCGGTACCTTCGCTTGCTTGAGATACTTCAAGAAGCCAACCTCTTCCGGACGAAGCATTAGCAGCGCATGGCCGCACAGGTCCTCCCCACGAGCCGTACGACCGACGCGATGGATGTACTCCTTGGTATCGTTCGGTGGATCGTACTGCACGATCCAATCGACGGCAGGAATATCGAGCCCACGGGCGGCCACATCCGTGCAGAGCAGTATACCCGTCTCGGCGTTACAGAACTGGAAAAATACCGACGTACGCTTCGATTGCTTTTGTTTGCCGTGAATCGACATCACCGGCAGATCGATGTAGTTGAACAGCTCGTGATGGAACTTGACGGACAGGCAGGA-GGAAAAGAAAACCATCACCTTCTTCTTGCGGTTCTTCTTCAGGAAGGTGAACAGCACGAGCAGACGCCGCTCGGAGGGACACACGATGTAGCCCTGTTCCAGCCCCGTCACCGTTGCTTCCTTCTTGTTATCATCCACACCGACGTAGATGGGTTCCGATTTCAGGGCGAGCTTTCCCAGCTCTTCCAGACGCGATGACTGTGTGGCGGAAAACAGCATGGTTTGGCGCTTTTTCGGCAAAATGCTAATGATCTGTTTCAGGTCCTCCTCGAACCCGATCTCCAGGATGCGATCGCACTCATCGATAATCAAGCACTGCAAGTTCTTGAACAGGAAGTTGGGCGTTGATTTCAGATGGTCCAGCAACCGGCCCGGCGTCGCCACGATGATGTTGATGCCCTTTTCCAGCTTTTCGTTCTCGGTGTGACGGCTTGCTCCTCCCATCAGCAGCCCATACGTCTGACAGTGGTACGTCATTAGCTCCTTCAGGACGCCGAAAATCTGCATCGCCAGTTCGCGCGTCGGCGAGATGACGATAACGCCCGCTCCGTTGCGCGGCTTGAAGCGCAGCTTGTGGATCAGCTCGACGGCGGGAATGAGGAAGGCCAACGTTTTACCACTGCCCGTTTTGGCCGAACCGATCAAATCTCTACCCTCCAGCAGTGGCGGTATCGATTTGGCCTGAATTTCCGTCATCTT-GGTGAATCCCATCT-CACC-GATCGCTTTCATCGTGTGGTCCGACACTTTGCCCTCGAGCGACTTGAACT-CCCGGTTGCCGAGGATGATCTCGTACGCACTGTTCGTCATCGAC-GGAACGGTTTCTTCCTGCTCGGCTTCCTTGCCTTCCCCGTTGCTATCGGCTTCATCGCCGTTCTGCTGTTCCTCGTCCTCATCATCAGAATCATCTTTAGGCCGCTTCACACCTCGGCCAACTGCCACGTCCTGTTCA---TCCTCCTCCTGC---TGTGGGATTTTATTCTTTTTCTTCAGCTTTTGTTTACCTTTCGGCGTTGCTTCCTCCGCCTCGTAATTTTCCTCCAAGTCTTCTACGGAGGCATGTCCGTTTTTCGCATTTCCATTGATTACTGGAGATATT-TTCTGCTTGTTTTTCTTTCCCATAGCACAATCTTTGTAATTTAACACAGTTTATTAGATGGAAAAGTCCAGAAAAGCAATTGTTCTCGGCGCGCTCGCGGAATTCGGCGG]

[+] EMBL AGA280288            [TTTTTTGTAGAGGACACCGTTCCGGGATAGTGCGGAACGGCTAAATAAAATGGGTTTATTATTTTAACGCTATCTCACATCGCGTACAGAGCAGCTTACTCGTACTTGACCTTCTTCAGCTGTTTCCGATCGGTAATGTGCTTAATTTTCAGCTTGCCCTCCTTCTCCTTGTTGAGCGTCTTGAAGTGGCCCATTCCACGGTTACCGGGTCGCCGCTCGGAGTTGTGCAGCTTGAAGCTCTTGCCAAAGTCAACGTACGGTGGCTGGGTGAAGCCAAAGTTCTTCGCCACCTGCACCAGATCGAGATTGGCTATGTTGAACACGTCCTTCATGTGGTGCCCTTCGTACGCACGCACGTACGTCTTGAACGCCAGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CNS09JXR             [                    TCCGGGATAGTGCGGAACGGCTAAATAAAATGGGTTTATTA TTTAACGCTATCTCACATCGCGTACAGAGCCGCTTACTCGTACTTGACCTTCTTCAGCTGTTTCCGATCGGTAATGTGCTTAATTTTCAGCTTGCCCTCCTTCTCCTTGTTGAGCGTCTTGAAGTGGCCCATTCCACGGTTACCGGGTCGCCGCTCGGAGTTGTGCAGCTTGAAGCTCTTGCCAAAGTCAACGTACGGTGGCTGGGTGAAGCCAAAGTTCTTCGCCACCTGCACCAGATCGAGATTGGCTATGTTGAACACGTCCTTCATGTGGTGCCCTTCGTACGCACGCATGTACGTCTTGAACGCCAGCTTGCCCGACTGGTTCAGGATATAGTTCTTCGCCATCAAATTCTCGAGCTGCAGCTGAATGTCCGCTATTTTGCTCCACGAGAACTCGAACTCGTTCAGCGGTACCTTCGCTTGCTTGAGATACTTCAAGAAGCCAACCTCTTCCGGACGAAGCATTAGCAGCGCATGGCCGCACAGGTCCTCCCCACGAGCCGTACGACCGACGCGATGGATGTACTCCTTGGTATCGTTCGGTGGATCGTACTGCACGATCCAATCGACGGCAGGAATATCGAGCCCACGGGCGGCCACATCCGTGCAGAGCAGTATACCCGTCTCGGCGTTACAGAACTGGAAAAATACCGACGTACGCTTCGATTGCTTTTGTTTGCCGTGAATCGACATCACCGGCAGATCGATGTAGTTGAACAGCTCGTGATGGAACTTGACGGACAGGCAGGA GGAAAAGAAAACCATCACCTTCTTCTTGCGGTTCTTCTTCAGGAAGGTGAACAGCACGAGCAGACGCCGCTCGGAGGGACACACGATGTAGCCCTGTTCCAGCCCCGTCACCGTTGCTTCCTTCTTGTTATCATCCACACCGACGTAGATGGGTTCCGATTTCAGGGCGAGCTTTCCCAGCTCTTttt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BX621574             [                                                                                                                                                                                                                                                                                                               AGATNGGCTATGTTGAACACGTCCTTCATGTGGTGCCCTTCGTACGCACGCACGTACGTCTTGAACGCCAGCTTGCCCGACTGNTTCAGGAAATAGTTCTTCGCCATCAAATTCTCGAGCTGCAGCTGAATGTCCGCTATTTTGCTCCACGAGAACTCGAACTCGTTCAGCGGTACCTTCGCTTGCTTGAGATACTTCAAGAAGCCAACCTCTTCCGGACGAAGCATTAGCAGCGCATGGCCGCACAGGTCCTCCCCACGAGCCGTACGACCGACGCGATGGATGTACTCCTTGGTATCGTTCGGTGGATCGTACTGCACGATCCAATCGACGGCAGGAATATCGAGCCCACGGGCGGCCACATCCGTGCAGAGCAGTATACCCGTCTCGGCGTTACAGAACTGGAAAAATACCGACGTACGCTTCGATTGCTTTTGTTTGCCGTGAATCGACATCACCGGCAGATCGATGTAGTTGAACAGCTCGTGATGGAACTTGACGGACAGGCAGGA GGAAAAGAAAACCATCACCTTCTTCTTGCGGTTCTTCTTCAGGAAGGTGAACAGCACGAGCAGACGCCGCTCGGAGGGACACACGATGTAGCCCTGTTCCAGCCCCGTCACCGTTGCTTCCTTCTTGTTATCATCCACACCGACGTAGATGGGTTCCGATTTCAGGGCGAGCTTTCCCAGCTCTTCCAGACGCGATGACTGTGTGGCGGAAAACAGCATGGTTTGGCGCTTTTTCGGCAAAATGCTAATGATCTGTTTCAGGTCCTCCTCGAACCCGATCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL BX620670             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCGACATCACCGNCAGATCGATGTAGTTGANCAGCTCGTGATGGAACTTGACGGACAGGCAGGAGGGAAAAGAAAACCATCACCTTCTTCTTGCGGTTCTTCTTCAGGAAGGTGAACAGCACGAGCAGACGCCGCTCGGAGGGACACACGATGTAGCCCTGTTCCAGCCCCGTCACCGTTGCTTCCTTCTTGTTATCATCCACACCGACGTAGATGGGTTCCGATTTCAGGGCGAGCTTTCCCAGCTCTTCCGGACGCGATGACTGTGTGGCGGAAAACAGCATGGTTTGGCGCTTTTTCGGCAAAATGCTAATGATCTGTTTCAGGTCCTCCTCGAACCCGATCTCCAGGATGCGATCGCACTCATCGATAATCAAGCACTGCAAGTTCTTGAACAGGAAGTTGGGCGTTGATTTCAGATGGTCCAGCAACCGGCCCGGCGTCGCCACGATGATGTTGATGCCCTTTTCCAGCTTTTCGTTCTCGGTGTGACGGCTTGCTCCTCCCATCAGCAGCCCATACGTCTGACAGTGGTACGTCATTAGCTCCTTCAGGACGCCGAAAATCTGCATCGCCAGTTCGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL BX625880             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATCACCGGCAGATCGATGTAGTTGAACAGCTCGTGATGGAACTTGACGGACAGGAAGGA GGAAAAGAAAACCATCACCTTCTTCTTGCGGTTCTTCTTCAGGAAGGTGAACAGCACGAGCAGACGCCGCTCGGAGGGACACACGATGTAGCCCTGTTCCAGCCCCGTCACCGTTGCTTCCTTCTTGTTATCATCCACACCGACGTAGATGGGTTCCGATTTCAGGGCGAGCTTTCCCAGCTCTTCCAGACGCGATGACTGTGTGGCGGAAAACAGCATGGTTTGGCGCTTTTTCGGCAAAATGCTAATGATCTGTTTTAGGTCCTCCTCGAACCCGATCTCCAGGATGCGATCGCACTCATCGATAATCAAGCACTGCAAGTTCTTGAACAGGAAGTTGGGCGTTGATTTCAGATGGTCCAGCAACCGGCCCGGCGTCGCCACGATAATGTTGATGCCCTTTTCCAGCTTTTCGTTCTCGGTGTGACGGCTTGCTCCTCCCATCAGCAGCCCATACGTCTGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL AGA281985            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGTTCCAGCCCCGTCACCGTTGCTTCCTTCTTGTTATCATCCACACCGACGTAGATGGGTTCCGATTTCAGGGCGAGCTTTCCCAGCTCTTCCAGACGCGATGACTGTGTGGCGGAAAACAGCATGGTTTGGCGCTTTTTCGGCAAAATGCTAATGATCTGTTTTAGGTCCTCCTCGAACCCGATCTCCAGGATGCGATCGCACTCATCGATAATCAAGCACTGCAAGTTCTTGAACAGGAAGTTGGGCGTTGATTTCAGATGGTCCAGCAACCGGCCCGGCGTCGCCACGATAATGTTGATGCCCTTTTCCAGCTTTTCGTTCTCGGTGTGACGGCTTGCTCCTCCCAGCAGCAGCCCATACGTCTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CNS09JXQ             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCTTTTTCGGCAAAATGCTAATGATCTGTTTCAGGTCCTCCTCGAACCCGATCTCCAGGATGCGATCGCACTCATCGATAATCAAGCACTGCAAGTTCTTGAACAGGAAGTTGGGCGTTGATTTCAGATGGTCCAGCAACCGGCCCCGCGTCGCCACGATGATGTTGATGCCCTTTTCCAGCTTTTCGTTCTCGGTGTGACGGCTTGCTCCTCCCATCAGCAGCCCATACGTCTGACAGTGGTACGTCATTAGCTCCTTCAGGACGCCGAAAATCTGCATCGCCAGTTCGCGCGTCGGCGAGATGACGATAACGCCCGCTCCGTTGCGCGGCTTGAAGCGCAGCTTGTGGATCAGCTCGACGGCGGGAATGAGGAAGGCCAACGTTTTACCACTGCCCGTTTTGGCCGAACCGATCAAATCTCTACCCTCCAGCAGTGGCGGTATCGATTTGGCCTGAATTTCCGTCATCTT GGTGAATCCCATCT CACC GATCGCTTTCATAGTGTGGTCCGACACTTTGCCTTCGAGCGACTTGAACT CCCGGTTGCCGAGGATGATCTCGTACGCACTGTTCGTCATCGAC GGAACGGTTTCTTCATGCTCGGCTTCCTTGCCTTCCCCGTTGCTATCGGCTTCATCGCCGTTCTGCTGTTCCTCGTCCTCATCATCAGAATCATCTTTAGGCCGCTTCACACCTCGGCCAACTGCCACGTCCTGTTCA   TCCTCCTCCTGC   TGTGGGATTTTATTCTTTTTCTTCAGCTTTTGTTTGCTTTTCGGCGTTGCTTCCTCCGCCTCGTAATTTTCCTCCAAGTCTTCTACGGAGGCATGTCCGTTTTTCGCATTTCCATTGATGACCGGAGATATT TTCTGCTTGTTTTTCTTTCCCATAGCACAATCTTTGTAATTTAACACAGTTTATTAGATGGAAAAATCCAGAAAAGCAATCGTT                          ]
[-] EMBL BM581646             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 cTCGCGCGTCGGCGAGATGACGATGACGCCCGCTCCGTTGCGCGGCTTGAAGCGCAGCTTGTGGATCAGCTCGACGGCGGGAATGAGGAAGGCCAACGTTTTACCACTGCCCGTTTTGGCCGAACCGATCAAATCTCTACCCTCCAGCAGTGGCGGTATCGATTTGGCCTGAATTTCCGTCATCTT GGTGAATCCCATCT CACC GATCGCTTTCATCGTCTGGTCCGACACTTTGCCCTCGAGCGACTTGAACT CCCGGTTGCCGAGGATGATCTCGTACGCACTGTTCGTCATCGAC GGAACGGTTTCTTCCTGCTCGGCTTCCTTGTCTTCCCCGTTGCTATCGGCTTCTTCGCCGTTCTGCTCTTCCTCCTCCTCATCATCAGTATCATCTTTAGGCCGCTTCACACCTCGGCCAACTGCCACGTCCTGTTCATCCTCCTCCTCCTGCTGTTGTGGGATTTTATTCTTTTTCTTCAGCTTTTGTTTACCTTTCGGCGTTGCTTCCTCCGCCTCGTAATTTTCCTCCAAGTCTTCTACGGAGGCATGTCCGTTTTTCGCATTTCCATTGATTACTGGAGATATTCCTCTGCTTGTTTTTCTTTCCCATAGCACAATCTTTGTAATTTAACACAGTTTATTAGATGGAAAAGTCCAGAAAAGCAATTGTTCTCGG                     ]
[-] EMBL BM604937             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCATCTTGGGTGAATCCCATCTCCACCGGATCGCTTTCATCGTGTGGTCCGACACTTTGCCCTCGAGCGACTTGAACTCCCCGGTTTCCGAGGATGATCTCGTACGCACTGTTCGTCATCGACGGGAACGGTTTCTTCCTGCTCGGCTTCCTTGCCTTCCCCGTTGCTATCGGCTTCATCGCCGTTCTGCTGTTCCTCGTCCTCATCATCAGAATCATCTTTAGGCCGCTTCACACCTCGGCCAACTGCCACGTCCTGTTCA   TCCTCCTCCTGT   TGTGGGATTTTATTCTTTTTCTTCAGCTTTTGTTTACCTTTCGGCGTTGCTTCCTCCGCCTCGTAATTTTCCTCCAAGTCTTCTACGGAGGCATGTCCGTTTTTCGCATTTCCATTGATTACTGGAGATATT TTCTGCTTGTTTTTCTTTCCCATAGCACAATCTTTGTAATTTAACACAGTTTATTAGATGGAAAAGTCCAGAAAAGCAATTGTTCTAATCGCGCTCGCGGAATTCGGCGG]




>consensus_8612#0
TTTTTTGTAGAGGACACCGTTCCGGGATAGTGCGGAACGGCTAAATAAAATGGGTTTATT
ATTTAACGCTATCTCACATCGCGTACAGAGCAGCTTACTCGTACTTGACCTTCTTCAGCT
GTTTCCGATCGGTAATGTGCTTAATTTTCAGCTTGCCCTCCTTCTCCTTGTTGAGCGTCT
TGAAGTGGCCCATTCCACGGTTACCGGGTCGCCGCTCGGAGTTGTGCAGCTTGAAGCTCT
TGCCAAAGTCAACGTACGGTGGCTGGGTGAAGCCAAAGTTCTTCGCCACCTGCACCAGAT
CGAGATTGGCTATGTTGAACACGTCCTTCATGTGGTGCCCTTCGTACGCACGCACGTACG
TCTTGAACGCCAGCTTGCCCGACTGGTTCAGGATATAGTTCTTCGCCATCAAATTCTCGA
GCTGCAGCTGAATGTCCGCTATTTTGCTCCACGAGAACTCGAACTCGTTCAGCGGTACCT
TCGCTTGCTTGAGATACTTCAAGAAGCCAACCTCTTCCGGACGAAGCATTAGCAGCGCAT
GGCCGCACAGGTCCTCCCCACGAGCCGTACGACCGACGCGATGGATGTACTCCTTGGTAT
CGTTCGGTGGATCGTACTGCACGATCCAATCGACGGCAGGAATATCGAGCCCACGGGCGG
CCACATCCGTGCAGAGCAGTATACCCGTCTCGGCGTTACAGAACTGGAAAAATACCGACG
TACGCTTCGATTGCTTTTGTTTGCCGTGAATCGACATCACCGGCAGATCGATGTAGTTGA
ACAGCTCGTGATGGAACTTGACGGACAGGCAGGAGGAAAAGAAAACCATCACCTTCTTCT
TGCGGTTCTTCTTCAGGAAGGTGAACAGCACGAGCAGACGCCGCTCGGAGGGACACACGA
TGTAGCCCTGTTCCAGCCCCGTCACCGTTGCTTCCTTCTTGTTATCATCCACACCGACGT
AGATGGGTTCCGATTTCAGGGCGAGCTTTCCCAGCTCTTCCAGACGCGATGACTGTGTGG
CGGAAAACAGCATGGTTTGGCGCTTTTTCGGCAAAATGCTAATGATCTGTTTCAGGTCCT
CCTCGAACCCGATCTCCAGGATGCGATCGCACTCATCGATAATCAAGCACTGCAAGTTCT
TGAACAGGAAGTTGGGCGTTGATTTCAGATGGTCCAGCAACCGGCCCGGCGTCGCCACGA
TGATGTTGATGCCCTTTTCCAGCTTTTCGTTCTCGGTGTGACGGCTTGCTCCTCCCATCA
GCAGCCCATACGTCTGACAGTGGTACGTCATTAGCTCCTTCAGGACGCCGAAAATCTGCA
TCGCCAGTTCGCGCGTCGGCGAGATGACGATAACGCCCGCTCCGTTGCGCGGCTTGAAGC
GCAGCTTGTGGATCAGCTCGACGGCGGGAATGAGGAAGGCCAACGTTTTACCACTGCCCG
TTTTGGCCGAACCGATCAAATCTCTACCCTCCAGCAGTGGCGGTATCGATTTGGCCTGAA
TTTCCGTCATCTTGGTGAATCCCATCTCACCGATCGCTTTCATCGTGTGGTCCGACACTT
TGCCCTCGAGCGACTTGAACTCCCGGTTGCCGAGGATGATCTCGTACGCACTGTTCGTCA
TCGACGGAACGGTTTCTTCCTGCTCGGCTTCCTTGCCTTCCCCGTTGCTATCGGCTTCAT
CGCCGTTCTGCTGTTCCTCGTCCTCATCATCAGAATCATCTTTAGGCCGCTTCACACCTC
GGCCAACTGCCACGTCCTGTTCATCCTCCTCCTGCTGTGGGATTTTATTCTTTTTCTTCA
GCTTTTGTTTACCTTTCGGCGTTGCTTCCTCCGCCTCGTAATTTTCCTCCAAGTCTTCTA
CGGAGGCATGTCCGTTTTTCGCATTTCCATTGATTACTGGAGATATTTTCTGCTTGTTTT
TCTTTCCCATAGCACAATCTTTGTAATTTAACACAGTTTATTAGATGGAAAAGTCCAGAA
AAGCAATTGTTCTCGGCGCGCTCGCGGAATTCGGCGG

consensusID : consensus_8612#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 846
fasta sequence 
                              [GTCGGTGGTCTGGGTTGGANNATGCCAGANNAGTGNGTTGCGGCCACCGTGGCACCAGATCGAGATTGGGCTAATGTTGTGACACGGTCTTGCATGTTGGTGCCNTTGCGTACGCACGCACGTACGTCGTGACGGCCAGCTTGCCCTGACCTGGTTCAGGAAATAGTTCTTCGCCATCNAAATTCCTCGAGCTGCAGCTGAATGTCCGCTAGTTTGCTCCAGCGAGAACTCGAACTCGTTCAGCGGTACCTTCGCTTGCTTGAGATACTTCAAGAAGGCCNACCTCTTCCGGTACGAAGCATTAGCAGCGCATGGCCGCACAGGTCCTCCCCACGAGCCGTACGACCGACGCGATGGATGTACTCCTTGGTATCGTTCGTTGGATCGTACTGCACGATCCAATCGACGGCAGGAATATCGAGCCCACAGGCAGGCCACATCCGTGCAGACGCAGTATACCCGTCTCGGCGTTACAGAACTGGAAAATGACCGACGTACGCTTCGATTGCTGTGTTGTTTGCCGTGAATCGACATCACCGGCAGATCGATGTAGTTGAACAGCTCGTGATGGAACTTGACAGGTACAGGCCAGGAGGAAAAGAAAACCATCACCTTCTTCTTGCAGGTTCTTCTTCAGGAAGGTGATACAGCACGAGCAGACGCAGCTCGGAGGGACACACAGATGTAGCCACTGTTCCAGCCCACAGTCACCAGTTGCTTCACATTCTTGTTATCATCACACACACGACGTAGATGGGTTCCGATTTCAGGGCGAGCTTTCCCAGCTCTTCCAGACGCAGATGACTGTGTGGCGGAAAACAGCATGTTTGCGCTTAACCTCGGGGG]

[-] EMBL AL697294             [GTCGGTGGTCTGGGTTGGANNATGCCAGANNAGTGNGTTGCGGCCACCGTGGCACCAGATCGAGATTGGGCTAATGTTGTGACACGGTCTTGCATGTTGGTGCCNTTGCGTACGCACGCACGTACGTCGTGACGGCCAGCTTGCCCTGACCTGGTTCAGGAAATAGTTCTTCGCCATCNAAATTCCTCGAGCTGCAGCTGAATGTCCGCTAGTTTGCTCCAGCGAGAACTCGAACTCGTTCAGCGGTACCTTCGCTTGCTTGAGATACTTCAAGAAGGCCNACCTCTTCCGGTACGAAGCATTAGCAGCGCATGGCCGCACAGGTCCTCCCCACGAGCCGTACGACCGACGCGATGGATGTACTCCTTGGTATCGTTCGTTGGATCGTACTGCACGATCCAATCGACGGCAGGAATATCGAGCCCACAGGCAGGCCACATCCGTGCAGACGCAGTATACCCGTCTCGGCGTTACAGAACTGGAAAATGACCGACGTACGCTTCGATTGCTGTGTTGTTTGCCGTGAATCGACATCACCGGCAGATCGATGTAGTTGAACAGCTCGTGATGGAACTTGACAGGTACAGGCCAGGAGGAAAAGAAAACCATCACCTTCTTCTTGCAGGTTCTTCTTCAGGAAGGTGATACAGCACGAGCAGACGCAGCTCGGAGGGACACACAGATGTAGCCACTGTTCCAGCCCACAGTCACCAGTTGCTTCACATTCTTGTTATCATCACACACACGACGTAGATGGGTTCCGATTTCAGGGCGAGCTTTCCCAGCTCTTCCAGACGCAGATGACTGTGTGGCGGAAAACAGCATGTTTGCGCTTAACCTCGGGGG]




>consensus_8612#1
GTCGGTGGTCTGGGTTGGANNATGCCAGANNAGTGNGTTGCGGCCACCGTGGCACCAGAT
CGAGATTGGGCTAATGTTGTGACACGGTCTTGCATGTTGGTGCCNTTGCGTACGCACGCA
CGTACGTCGTGACGGCCAGCTTGCCCTGACCTGGTTCAGGAAATAGTTCTTCGCCATCNA
AATTCCTCGAGCTGCAGCTGAATGTCCGCTAGTTTGCTCCAGCGAGAACTCGAACTCGTT
CAGCGGTACCTTCGCTTGCTTGAGATACTTCAAGAAGGCCNACCTCTTCCGGTACGAAGC
ATTAGCAGCGCATGGCCGCACAGGTCCTCCCCACGAGCCGTACGACCGACGCGATGGATG
TACTCCTTGGTATCGTTCGTTGGATCGTACTGCACGATCCAATCGACGGCAGGAATATCG
AGCCCACAGGCAGGCCACATCCGTGCAGACGCAGTATACCCGTCTCGGCGTTACAGAACT
GGAAAATGACCGACGTACGCTTCGATTGCTGTGTTGTTTGCCGTGAATCGACATCACCGG
CAGATCGATGTAGTTGAACAGCTCGTGATGGAACTTGACAGGTACAGGCCAGGAGGAAAA
GAAAACCATCACCTTCTTCTTGCAGGTTCTTCTTCAGGAAGGTGATACAGCACGAGCAGA
CGCAGCTCGGAGGGACACACAGATGTAGCCACTGTTCCAGCCCACAGTCACCAGTTGCTT
CACATTCTTGTTATCATCACACACACGACGTAGATGGGTTCCGATTTCAGGGCGAGCTTT
CCCAGCTCTTCCAGACGCAGATGACTGTGTGGCGGAAAACAGCATGTTTGCGCTTAACCT
CGGGGG

consensusID : consensus_8612#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence 
                              [ACAGAGCAGCTTACTCGTACTTGACCTTGCTTCAGCTGTTTCCGATCGGTAATGTGCTTAAGTTGTTCAGCTTGCCCTCCTTCTCCTTGTTGAGCGTCTTGAAGTGGCCCATTCCACGGTTACCGGGTCGCCGGCTCCGGGAAGCTTTGGTNGCCAAGCCATTTGGAAGGCCTGCCTTTGGCCCCCCATAAAGTCCAAACGTAACAGGTGCGCCTGGGTGTAAGCCAAAAGTTCTTCGCCACCTGCAACCAGATCGAGATTGGCTATGTTGAACACGTCACTTCATGTGGTGCCACATTCGTACAGCACGCACAGTACAGTCTTGAACAGCCAAGCATTGCNCCAGACTGGTTCAGGAAATAGTTCTTCGCCATCAAATTCTCGAGCTGCAGCTGAATGTCCGCTATTTTGCTCCACGAGAACTCGAACTCGTTCAGCAGGTACCTTCGCTTGCTTGAGATATTTCAAGAAGCCAACCTCTTCCGGACGGAGCATTAGCAGCGCATGACNCGCACAGGTCACTCACCCACAGGGCACAGTACGACCGACGCGATGGATGTACTCCTTGGTATCAGTTCGGTGGATCAGTACTGCACAGATCCAATCGACGGCAGGAATATCGAGCCACACGGGCAGGCACACATCCGTGCAGACAGTATACCCGTCTCGCGTTCCTCGGGCAATTCTG]

[-] EMBL AL931386             [ACAGAGCAGCTTACTCGTACTTGACCTTGCTTCAGCTGTTTCCGATCGGTAATGTGCTTAAGTTGTTCAGCTTGCCCTCCTTCTCCTTGTTGAGCGTCTTGAAGTGGCCCATTCCACGGTTACCGGGTCGCCGGCTCCGGGAAGCTTTGGTNGCCAAGCCATTTGGAAGGCCTGCCTTTGGCCCCCCATAAAGTCCAAACGTAACAGGTGCGCCTGGGTGTAAGCCAAAAGTTCTTCGCCACCTGCAACCAGATCGAGATTGGCTATGTTGAACACGTCACTTCATGTGGTGCCACATTCGTACAGCACGCACAGTACAGTCTTGAACAGCCAAGCATTGCNCCAGACTGGTTCAGGAAATAGTTCTTCGCCATCAAATTCTCGAGCTGCAGCTGAATGTCCGCTATTTTGCTCCACGAGAACTCGAACTCGTTCAGCAGGTACCTTCGCTTGCTTGAGATATTTCAAGAAGCCAACCTCTTCCGGACGGAGCATTAGCAGCGCATGACNCGCACAGGTCACTCACCCACAGGGCACAGTACGACCGACGCGATGGATGTACTCCTTGGTATCAGTTCGGTGGATCAGTACTGCACAGATCCAATCGACGGCAGGAATATCGAGCCACACGGGCAGGCACACATCCGTGCAGACAGTATACCCGTCTCGCGTTCCTCGGGCAATTCTG]




>consensus_8612#2
ACAGAGCAGCTTACTCGTACTTGACCTTGCTTCAGCTGTTTCCGATCGGTAATGTGCTTA
AGTTGTTCAGCTTGCCCTCCTTCTCCTTGTTGAGCGTCTTGAAGTGGCCCATTCCACGGT
TACCGGGTCGCCGGCTCCGGGAAGCTTTGGTNGCCAAGCCATTTGGAAGGCCTGCCTTTG
GCCCCCCATAAAGTCCAAACGTAACAGGTGCGCCTGGGTGTAAGCCAAAAGTTCTTCGCC
ACCTGCAACCAGATCGAGATTGGCTATGTTGAACACGTCACTTCATGTGGTGCCACATTC
GTACAGCACGCACAGTACAGTCTTGAACAGCCAAGCATTGCNCCAGACTGGTTCAGGAAA
TAGTTCTTCGCCATCAAATTCTCGAGCTGCAGCTGAATGTCCGCTATTTTGCTCCACGAG
AACTCGAACTCGTTCAGCAGGTACCTTCGCTTGCTTGAGATATTTCAAGAAGCCAACCTC
TTCCGGACGGAGCATTAGCAGCGCATGACNCGCACAGGTCACTCACCCACAGGGCACAGT
ACGACCGACGCGATGGATGTACTCCTTGGTATCAGTTCGGTGGATCAGTACTGCACAGAT
CCAATCGACGGCAGGAATATCGAGCCACACGGGCAGGCACACATCCGTGCAGACAGTATA
CCCGTCTCGCGTTCCTCGGGCAATTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8612#0      TTTTTTGTAGAGGACACCGTTCCGGGATAGTGCGGAACGGCTAAATAAAATGGGTTTATT 60
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      ATTTAACGCTATCTCACATCGCGTACAGAGCAGCTTACTCGTACTTGACCTTCTTCAGCT 120
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      -ACAGAGCAGCTTACTCGTACTTGACCTTGCTTCAGCTGTTTCCGATCGGTAATGTGCTT 59
                                                                                  

consensus_8612#0      GTTTCCGATCGGTAATGTGCTTAATTTTCAGCTTGCCCTCCTTCTCCTTGTTGAGCGTCT 180
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      AAGTTGTTCAGCTTGCCCTCCTTCTCCTTGTTGAGCGTCTTGAAGTGGCCCATTCCACGG 119
                                                                                  

consensus_8612#0      TGAAGTGGCCCATTCCACGGTTACCGGGTCGCCGCTCGGAGTTGTGCAGCTTGAAGCTCT 240
consensus_8612#1      ------------------------------------------------------GTCGGT 6
consensus_8612#2      TTACCGGGTCGCCGGCTCCGGGAAGCTTTGGTNGCCAAGCCATTTGGAAGGCCTGCCTTT 179
                                                                              *  *

consensus_8612#0      TGCCA------AAGTCAACGTACGGTGGCTGGGTGAAGCCAAA--------GTTCTTCGC 286
consensus_8612#1      GGTCT------GGGTTGGANNATGCCAGANNAGTGN-GTTGCG--------GC----CAC 47
consensus_8612#2      GGCCCCCCATAAAGTCCAAACGTAACAGGTGCGCCTGGGTGTAAGCCAAAAGTTCTTCGC 239
                       * *         **            *    *    *             *     * *

consensus_8612#0      CACCTGCA-CCAGATCGAGATTGGCT--ATGTTG-AACACGTCCTT-CATGT-GGTGCCC 340
consensus_8612#1      CGTG-GCA-CCAGATCGAGATTGGGCTAATGTTGTGACACGGTCTTGCATGTTGGTGCCN 105
consensus_8612#2      CACCTGCAACCAGATCGAGATTGGCT--ATGTTG-AACACGTCACTTCATGT-GGTGCCA 295
                      *    *** ***************    ******  *****    * ***** ****** 

consensus_8612#0      T-T-CGTAC-GCACGCAC-GTAC-GTCTTGA-ACGCCAGC--TTGCCCGA--CTGGTTCA 390
consensus_8612#1      T-TGCGTAC-GCACGCAC-GTAC-GTCGTGA-CGGCCAGC--TTGCCCTGACCTGGTTCA 158
consensus_8612#2      CATTCGTACAGCACGCACAGTACAGTCTTGAACAGCCAAGCATTGCNCCAGACTGGTTCA 355
                        * ***** ******** **** *** ***   ****    **** *    ********

consensus_8612#0      GGATATAGTTCTTCGCCATCAAA--TTCTCGAGCTGCAGCTGAATGTCCGCTATTTTGCT 448
consensus_8612#1      GGAAATAGTTCTTCGCCATCNAAATTCCTCGAGCTGCAGCTGAATGTCCGCTAGTTTGCT 218
consensus_8612#2      GGAAATAGTTCTTCGCCATCAAA--TTCTCGAGCTGCAGCTGAATGTCCGCTATTTTGCT 413
                      *** **************** **  * ************************** ******

consensus_8612#0      CCA-CGAGAACTCGAACTCGTTCAGC-GGTACCTTCGCTTGCTTGAGATACTTCAAGAAG 506
consensus_8612#1      CCAGCGAGAACTCGAACTCGTTCAGC-GGTACCTTCGCTTGCTTGAGATACTTCAAGAAG 277
consensus_8612#2      CCA-CGAGAACTCGAACTCGTTCAGCAGGTACCTTCGCTTGCTTGAGATATTTCAAGAAG 472
                      *** ********************** *********************** *********

consensus_8612#0      -CCAACCTCTTCCGG-ACGAAGCATTAGCAGCGCATGGCC-GCACAGGTC-CTC-CCCAC 561
consensus_8612#1      GCCNACCTCTTCCGGTACGAAGCATTAGCAGCGCATGGCC-GCACAGGTC-CTC-CCCAC 334
consensus_8612#2      -CCAACCTCTTCCGG-ACGGAGCATTAGCAGCGCATGACNCGCACAGGTCACTCACCCAC 530
                       ** *********** *** ***************** *  ********* *** *****

consensus_8612#0      GAGCC---GTACGACCGACGCGATGGATGTACTCCTTGGTATC-GTTCGGTGGATC-GTA 616
consensus_8612#1      GAGCC---GTACGACCGACGCGATGGATGTACTCCTTGGTATC-GTTCGTTGGATC-GTA 389
consensus_8612#2      AGGGCACAGTACGACCGACGCGATGGATGTACTCCTTGGTATCAGTTCGGTGGATCAGTA 590
                        * *   *********************************** ***** ****** ***

consensus_8612#0      CTGCAC-GATCCAATCGACGGCAGGAATATCGAGCC-CACGGGC-GGC-CACATCCGTGC 672
consensus_8612#1      CTGCAC-GATCCAATCGACGGCAGGAATATCGAGCC-CACAGGCAGGC-CACATCCGTGC 446
consensus_8612#2      CTGCACAGATCCAATCGACGGCAGGAATATCGAGCCACACGGGCAGGCACACATCCGTGC 650
                      ****** ***************************** *** *** *** ***********

consensus_8612#0      AGA-GCAGTATACCCGTCTCGGCGTTACAGAACTGGAAAAATACCGACGTACGCTTCGAT 731
consensus_8612#1      AGACGCAGTATACCCGTCTCGGCGTTACAGAACTGGAAAATGACCGACGTACGCTTCGAT 506
consensus_8612#2      AGA--CAGTATACCCGTCTCG-CGTTCC----TCGGGCAATT-CTG-------------- 688
                      ***  **************** **** *      **  **   * *              

consensus_8612#0      TGCTTT--TGTTTGCCGTGAATCGACATCACCGGCAGATCGATGTAGTTGAACAGCTCGT 789
consensus_8612#1      TGCTGTGTTGTTTGCCGTGAATCGACATCACCGGCAGATCGATGTAGTTGAACAGCTCGT 566
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      GATGGAACTTGACGG--ACAGGC-AGGAGGAAAAGAAAACCATCACCTTCTTCTTGC-GG 845
consensus_8612#1      GATGGAACTTGACAGGTACAGGCCAGGAGGAAAAGAAAACCATCACCTTCTTCTTGCAGG 626
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      TTCTTCTTCAGGAAGGTGA-ACAGCACGAGCAGACGCCGCTCGGAGGGACACAC-GATGT 903
consensus_8612#1      TTCTTCTTCAGGAAGGTGATACAGCACGAGCAGACGCAGCTCGGAGGGACACACAGATGT 686
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      AGCC-CTGTTCCAGCCCC--GTCACC-GTTGCTTCC--TTCTTGTTATCATC-CACAC-C 955
consensus_8612#1      AGCCACTGTTCCAGCCCACAGTCACCAGTTGCTTCACATTCTTGTTATCATCACACACAC 746
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      GACGTAGATGGGTTCCGATTTCAGGGCGAGCTTTCCCAGCTCTTCCAGACGC-GATGACT 1014
consensus_8612#1      GACGTAGATGGGTTCCGATTTCAGGGCGAGCTTTCCCAGCTCTTCCAGACGCAGATGACT 806
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      GTGTGGCGGAAAACAGCATGGTTTGGCGCTTTTTCGGCAAAATGCTAATGATCTGTTTCA 1074
consensus_8612#1      GTGTGGCGGAAAACAGCATGTTTGCGCTTAACCTCGGGGG-------------------- 846
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      GGTCCTCCTCGAACCCGATCTCCAGGATGCGATCGCACTCATCGATAATCAAGCACTGCA 1134
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      AGTTCTTGAACAGGAAGTTGGGCGTTGATTTCAGATGGTCCAGCAACCGGCCCGGCGTCG 1194
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      CCACGATGATGTTGATGCCCTTTTCCAGCTTTTCGTTCTCGGTGTGACGGCTTGCTCCTC 1254
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      CCATCAGCAGCCCATACGTCTGACAGTGGTACGTCATTAGCTCCTTCAGGACGCCGAAAA 1314
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      TCTGCATCGCCAGTTCGCGCGTCGGCGAGATGACGATAACGCCCGCTCCGTTGCGCGGCT 1374
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      TGAAGCGCAGCTTGTGGATCAGCTCGACGGCGGGAATGAGGAAGGCCAACGTTTTACCAC 1434
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      TGCCCGTTTTGGCCGAACCGATCAAATCTCTACCCTCCAGCAGTGGCGGTATCGATTTGG 1494
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      CCTGAATTTCCGTCATCTTGGTGAATCCCATCTCACCGATCGCTTTCATCGTGTGGTCCG 1554
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      ACACTTTGCCCTCGAGCGACTTGAACTCCCGGTTGCCGAGGATGATCTCGTACGCACTGT 1614
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      TCGTCATCGACGGAACGGTTTCTTCCTGCTCGGCTTCCTTGCCTTCCCCGTTGCTATCGG 1674
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      CTTCATCGCCGTTCTGCTGTTCCTCGTCCTCATCATCAGAATCATCTTTAGGCCGCTTCA 1734
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      CACCTCGGCCAACTGCCACGTCCTGTTCATCCTCCTCCTGCTGTGGGATTTTATTCTTTT 1794
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      TCTTCAGCTTTTGTTTACCTTTCGGCGTTGCTTCCTCCGCCTCGTAATTTTCCTCCAAGT 1854
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      CTTCTACGGAGGCATGTCCGTTTTTCGCATTTCCATTGATTACTGGAGATATTTTCTGCT 1914
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      TGTTTTTCTTTCCCATAGCACAATCTTTGTAATTTAACACAGTTTATTAGATGGAAAAGT 1974
consensus_8612#1      ------------------------------------------------------------
consensus_8612#2      ------------------------------------------------------------
                                                                                  

consensus_8612#0      CCAGAAAAGCAATTGTTCTCGGCGCGCTCGCGGAATTCGGCGG 2017
consensus_8612#1      -------------------------------------------
consensus_8612#2      -------------------------------------------


Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)