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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1200 fasta sequence
[CCGCGGACGCGTGGGCGGAAAAGTTGTTAGTGAAAGCCCACTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTCCACGTTTCGCACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAGGGTCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGG-AAAGTTTGAGGATATAGCTGATTTTGTCGAGAAAGGACATC-TTC-TTTCGGAATCCGAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTGGCCGAAAATCAATCATCTTTACGATTGCACGAGATTGGTCCTCGTATTACGATGCGGTTAATGAAGATAGAGGACGATCTTATGACGGGCGAAGTACTCTATCACGACTATATCGAAAAGGACGCGATCGAAGTGGAAGCTCTCCGCAAGAAGCGTGCTCAGCAGCGCCGACTAAAGGAACAGCGCAAGCACAAGCAGGAAGAAAATTTGAAAAAGAAAGAAAACGACAAAAAGAGCACCGTGCTAAGACGTCCAAGCAAGGCAAGAGCGGCGAAATAACGGAACAGGACAAGTTGCTGTTGAAAGATGCGGAGGAAGCTGTGGGGCGATATATTCGGATGAGGATGACCCCCNAATACTATCGCAAN]
[+] EMBL BM592590 [CCGCGGACGCGTGGGCGGAAAAGTTGTTAGTGAAAGCCCACTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTCCACGTTTCGCACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAGGGTCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCA ]
[+] EMBL BX627997 [ CTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAGGGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGGAAAAGTTTGAGGATATAGCTGATTTTGTCGAG AANGACATCTTTCTTTTCNGAATCCGA ]
[+] EMBL BX606305 [ CAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTCCACGTTTCGCACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAGGGTCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCTAGGAGTGAAGAAGCTTGTAACACGCAACATACCAAACTTGGG AAAGTTTGAGGATATAGCTGATTTTGTCGAGAAAGGACATC TTC TTTCGGAATCCGAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTGGCCGAAAATCAATCATCTTTACGAT ]
[+] EMBL BM618729 [ ccgCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGG AAAGTTTGAGGATATAGCTGATTTTGTCGAGAAAGGACATC TTC TTTCGGAATCCGAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTG ]
[+] EMBL BX626397 [ TCGTCTCTGAAACGATGCGTNCTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGG AAAGTTTGAGGATATAGCTGACTTTGTCGAGAAAGGACATC TTC TTTCGGAATCCGAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTGGCCGAAAATCAATCATCTTTACGATTGCACGAGATTGGTCCTCGTATTACGATGCGGTTAATGAAGATAGAGGACGATCTTATGACGGGCGAAGTACTCTATCACGACTATATCGAAAAGGACGCGATCGAAGTGGAAGCTCTCCGCAAGAAGCGTGCTCAGCAGCGCCGACTAAAGGAACAGCGCAAGCACAAGCAGGAAGAAAATTTGAAAAAGAAAGAAAACGACAAAAAGAGCACCGTGCTAAGACGTCCAAGCAAGGCAAGAGCGGCGAAATAACGGAACAGGACAAGTTGCTGTTGAAAGATGCGGAGGAAGCTGTGGGGCGATATATTCGGATGAGGATGACCCCCNAATACTATCGCAAN]
[-] EMBL AGA283649 [ AAGTTTGAGGATATAGCTGATTTTGTCGAGAAAGGACATC TTC TGTCGGAATCCGAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTGGCCGAAAATCAATCATCTTTACGATTGCACGAGATTGGTCCTCGTATTACGATGCGGTTAATGAAGATAGAGGACGATCTTATGACGGGCGAAGTACTCTATCACGACTATATCGAAAAGGACGCGATCGAAGTGGAAGCTCTCCGCAAGAAGCGTGCTCAGCAGCGCCGATTAAAGGTGCAGCGCACGCACAAGCAGGAAGAAAATTTGAAAAAAAA ]
[+] EMBL BX628960 [ nTTTTGTCGAGAAAGGACATC TTC TTTCGGAATCCGAAGCCTATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTGGCCGAAAATCAATCATCCTTACGATTGCACGAGATTGGTCCTCGNATTACAATGCTGNTAATGAAGATANAGGACGATCTTATGAC ]
consensusID : consensus_8624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 738 fasta sequence
[TTTTGCCGGTAGAAGAGTTGTGTC-GGAAAAGTTGTTAGT-GAAAGCCCACTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATT-TCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGAT--TTTGTTCA-TTTGTCCGGATT-CTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAG-GGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTT-GG-CAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAA-GAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATT-TGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGT-CTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGGAAAGTTTGAGGAT]
[+] EMBL BX621392 [TTTTGCCGGTAGAAGAGTTGTGTC GGAAAAGTTGTTAGT GAAAGCCCACTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATT TCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGAT TTTGTTCA TTTGTCCGGATT CTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAG GGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTT GG CAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAA GAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATT TGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGT CTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGGAAAGTTTGAGGAT]
[+] EMBL BX624374 [ AGTTGTGTCTGGAAAAGTTGTTAGTAGAAAGCCCACTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATT TCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTTGTGAGAGACGCATCAACAAGGTGAAAGAT TTTGTTCA TTTGTCCGGATT CTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATANNACGCATGCCGAA GGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGG CAAAGGATG ]
[+] EMBL AL931560 [ cgagg ttAAAAG TGTTAGT GAAAGCCCACTCATG AAAAGAAAAGCCGAAAGCCTC ACACAAACGGAA CG CCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATTNTCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTCTTTGGNCATTTTGTCCGGATTACTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAGTGGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTT GGCCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAACGAGTGCTTCAAAACGGGCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTANGAAGCTAATGGCTAGCACGTNTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTACTCTGAAACGATGCGTACTGNTATCATACAACCGGTTAAGCAAATTG ]
[+] EMBL AGA284937 [ TT TCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGAT TTTGTTCA TTTGTCCGGATT CTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAG GGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTT GG CAAAGGATGTTATTAGCAACTCGCGCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8624#0 ------CCGCGGACGCGTGGG--CGGAAAAGTTGTTAGTGAAAGCCCACTCATGAAAAAG 52
consensus_8624#1 TTTTGCCGGTAGAAGAGTTGTGTCGGAAAAGTTGTTAGTGAAAGCCCACTCATGAAAAAG 60
* * ** * ** * *************************************
consensus_8624#0 AAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGAT 112
consensus_8624#1 AAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGAT 120
************************************************************
consensus_8624#0 GAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGC 172
consensus_8624#1 GAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGC 180
************************************************************
consensus_8624#0 TCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCG 232
consensus_8624#1 TCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCG 240
************************************************************
consensus_8624#0 AACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTC 292
consensus_8624#1 AACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTC 300
************************************************************
consensus_8624#0 CACGTTTCGCACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATA 352
consensus_8624#1 CACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATA 360
******** ***************************************************
consensus_8624#0 CGCATGCCGAAGGGTCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGAT 412
consensus_8624#1 CGCATGCCGAAGGGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGAT 420
************** *********************************************
consensus_8624#0 GTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTG 472
consensus_8624#1 GTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTG 480
************************************************************
consensus_8624#0 GTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTT 532
consensus_8624#1 GTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTT 540
************************************************************
consensus_8624#0 CAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGC 592
consensus_8624#1 CAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGC 600
************************************************************
consensus_8624#0 GTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACA 652
consensus_8624#1 GTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACA 660
************************************************************
consensus_8624#0 GTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAAC 712
consensus_8624#1 GTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAAC 720
************************************************************
consensus_8624#0 TTGGGAAAGTTTGAGGATATAGCTGATTTTGTCGAGAAAGGACATCTTCTTTCGGAATCC 772
consensus_8624#1 TTGGGAAAGTTTGAGGAT------------------------------------------ 738
******************
consensus_8624#0 GAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTG 832
consensus_8624#1 ------------------------------------------------------------
consensus_8624#0 GCCGAAAATCAATCATCTTTACGATTGCACGAGATTGGTCCTCGTATTACGATGCGGTTA 892
consensus_8624#1 ------------------------------------------------------------
consensus_8624#0 ATGAAGATAGAGGACGATCTTATGACGGGCGAAGTACTCTATCACGACTATATCGAAAAG 952
consensus_8624#1 ------------------------------------------------------------
consensus_8624#0 GACGCGATCGAAGTGGAAGCTCTCCGCAAGAAGCGTGCTCAGCAGCGCCGACTAAAGGAA 1012
consensus_8624#1 ------------------------------------------------------------
consensus_8624#0 CAGCGCAAGCACAAGCAGGAAGAAAATTTGAAAAAGAAAGAAAACGACAAAAAGAGCACC 1072
consensus_8624#1 ------------------------------------------------------------
consensus_8624#0 GTGCTAAGACGTCCAAGCAAGGCAAGAGCGGCGAAATAACGGAACAGGACAAGTTGCTGT 1132
consensus_8624#1 ------------------------------------------------------------
consensus_8624#0 TGAAAGATGCGGAGGAAGCTGTGGGGCGATATATTCGGATGAGGATGACCCCCNAATACT 1192
consensus_8624#1 ------------------------------------------------------------
consensus_8624#0 ATCGCAAN 1200
consensus_8624#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||