These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1305 fasta sequence [GCGCCTCTGTGCCTTCCATTCACGTGTAGAGAGGTTTTTAGCAGCCGAACCGGATGGATGACACACACACACACACACATTGTCTCTCGGACACACATAGTAGAGCCGCTTTTGCGTGGGGAGCAGGGTTGGAAAAGATAGGAAGAGGATGTAAAAGTTCAGTTTAATGTTTGTTTGTTTGTTTTTTTTTTGGTGCGTTTATTGGCATCCTTTTGCAAGGGAAACAAAACACAACAGCAAACAGAGTCAAAAAAGGAGAAAGATAGTTCCGTATGCTTATTAGAGGTCGGGAGCAATCCTCCAAAAAAATCGATTTGCTACGTGTGCTATAATAGCAGTGTTTGAATTAAGTTTCATAAATTAACGATTATCCTTATTGAGAGCAAAATACAAAGCAAAGCAAACACAGCATAATTATCAAAACAAGCAACAAACTAACAAACAAAAGAAATGCAAACGAAACAAAACAAAAAGGTGCGCCCAACGAGACAGTAAACAGATACTCTAGAACTACAAAAATACCTCTATTTGTGTGTAATAGTCAATAATGAGTAAGGCATCCAGTGCGCCGAACAGCAAGCAGATCAGCAGCAGCAGCAGCAGAAGCAGCAAATACCAGTATGATATTTCTTTAGCGTATTTGTGGCGTCTGTGAGTAGAGCGAATGTGCGCGGATGAAGCATGCTAACGTGCAGCCAACGACAACGGGAGGAATACTAATATTAAGCCACAATAATCGAATCCATCTACATCTGCAGGCAACACATTGCAAGTGCAGCAACAAGCATCAACAAACAAACAAACACGAGCAAAATCACATGTTAACCGAACTGGAAATCAAATAAACTAAATCATCGCCAGGCTGAACTAGGCCCAGACCCATTCATATGGTACGCGTGGTCCACGGTTGGGAACAAAACTGCAAACACCACAGCGTACAGTGGAGGCGGTGTACTGCAATTGATTCGAGAAATGGAAAACAGAAAGTCCAAATCGCCAAGTCAACCCAACCAGCGCTCTCTAGTAGTAGTGGTAGTAGTAGATAACTTCTGCTTAACTCTCGGAGTGGTAACATCCGTGTGGCTTATTTGTGTCTGCCCGGATGTCGTATATGTTGATCATGCATGCCGTGCGCTTATATAAATATGCATCAGCTGCTGCGCAACGCAGCGAACGCAGCCGCGAGTCGATTTTGTTTATGTGTGCTAAGAATTTTGCAATTTATTGTGTATAAAAGTGGAAGCAAGCAAACAAACAGGCAAAAAAGCTGAAACACAGTGCAGCGCGATAGCTATTTTTTTCAGC] [+] EMBL BX611116 [GCGCCTCTGTGCCTTCCATTCACGTGTAGAGAGGTTTTTAGCAGCCGAACCGGATGGATGACACACACACACACACACATTGTCTCTCGGACACACATAGTAGAGCCGCTTTTGCGTGGGGAGCAGGGTTGGAAAAGATAGGAAGAGGATGTAAAAGTTCAGTTTAATGTTTGTTTGTTTGTTTTTTTTTTGGTGCGTTTATTGGCATCCTTTTACAAGGGAAACAAAACACAACAGCAAACAGAGTCAAAAAAGGAGAAAGATAGTTCCGTATGCTTATTAGAGGTCGGCAGCAATCCTCCAAAAAAATCGATTTGCTACGTGTGCTATAATAGCAGTGTTTG ] [+] EMBL BX609674 [ CACACATGGTCTCTCGGACATACATAGTAGAGTCGCTTTTGCGTGGGGAACAGGGTTGGAAAAAATAGGAAGAGGATGTAAAAGTTCAGTTTAATGTTTGTTTGGTTG TTTTTTTTTGGTGCGTTTATTGGCATCCTTTTGCAACTGAAACAAAACACAACAGCAAACAGAGTCAAAAAAGGAGAAATATAGTTCCGTATGCTTATTAGAGGTCGGGAGCAATCTTCCAAAAAAATCGATTTGCTACGTGTGCTATAATAGCAGTGTT ] [+] EMBL BM613534 [ ccgGGCATCCTTTTGTAAGGGAAACAAAACACAACAGCAAACAGAGTCAAAAAAGGAGAAAGATAGTTCCGTATGCTTATTAGAGGTCGGGAGCAATCCTCC AAATAATCGATTTGCTACGTGTGCTATAATAGCAGTGTTTGAATTAAGTTTCATAAATTAACGATTATCCTTATTGAGAGCAAAATACAAAGCAAAGCAAACACAGCATAATTATCAAAACAAGCAACAAACTAACAAACAAAAGAAATGCAAACGAAACAAAACAAAAAGGTGCGCCCAACGAGACAGTAAACAGATACTCTAGAACTACAAAAATACCTCTATTTGTGTGTAATAGTCAATAATGAGTAAGGCATCCAGTGCGCCGAACAGCAAGCAGATCAGCAGCAGCAGCAGCAGAAGCAGCAAATACCAGTATGATATTTCTTTAGCGTATTTGTGGCGTCTGTGAGTAGAGCGAATGTGCGCGGATGAAGCATGCTAACGTGCAGCCAACGACAACGGGAGGAATACTAATATTAAGCCACAATAATCGAATCCATCTACATCTGCAGGCAACACATTGCAAGTGCAGCAACAAGCATCAACAAACAAACAAACACGAGCAAAATCACATGTTAACCGAACTGGAAATCAAATAAACTAAATCATCGCCAG ] [+] EMBL BX610479 [ TGCAGGCAACACATTGCAAGTGCAGCAACAAGCATCAACAAACAAACAAACACGAGCAAAATCACATGTTAACCGAACTGGAAATCAAATAAACTAAATCATCGCCAGGCTGAACTAGGCCCAGACCCATTCATATGGTACGCGTGGTCCACGGTTGGGAACAAAACTGCAAACACCACAGCGTACAGTGGAGGCGGTGTACTGCAATTGATTCGAGAAATGGAAAACAGAAAGTCCAAATCGCCAAGTCAACCCAACCAGCGCTCTCTAGTAGTAGTGGTAGTAGTAGATAACTTCTGCTTAACTCTCGGAGTGGTAACATCCGTGTGGCTTATTTGTGTCTGCCCGGATGTCGTATATGTTGATCATGCATGCCGTGCGCTTATATAAATATGCATCAGCTGCTGCGCAACGCAGCGAACGCAGCCGCGAGTCGATTTTGTTTATGTGTGCTAAGAATTTTGCAATTTATTGTGTATAAAAGTGGAAGCAAGCAAACAAACAGGCAAAAAAGCTGAAACACAGTGCAGCGCGATAGCTATTTTTTTCAGC] [+] EMBL BX610480 [ ggGCAGCAACAAGCATCAACAAACAAACAAACACGAGCAAAATCACATGTTAACCGAACTGGAAATCAAATAAACTAAATCATCGCCAGGCTGAACTAGGCCCAGA ] consensusID : consensus_8628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 699 fasta sequence [AAATCAAATAAACTAAATCCCCGCCAGGCTGAACTAGGCCCAGGCCCATTCATATGGTACGCGTGGTCCACGGTTTGGGAACAAAACTGCAAACACCATTGCGTACAGCGGCAGTGTACTGCAATTGATTCGAGAAATGGAAAACAGAAAGTCTAAATCTTGGCGATCAACCCAACCAGCGCTCTCTAGTAGTAGCGGTAGTAGTAGTAGTGGTAGTAGTAGATAACTTCTGCTTAACTCCCGGAGTGGTAACATCCGTGTGGCTTATTTGTGTCTGCCCGGATGTCCTATATGTTGATCATGTATGCCGTGCGCTTATATAAATATGCATCAGCTGCTGCGCAACGCAGCGAACGCAGCCGCGAGTCGATTTTGTTTATGTGTTCTAAGAATTTTGCAATTTATTGTGTATAAAAGCGGAAGTAAGCAAGCAAACAAACAAAAAAGCAAAAATACACAGTGCAGTGCGATAGCCATTTTTTTCAGCTATTCTCAAGAAAAAACCCGCCCGATGCATTAAAGAAGCTTGGATGCGGGATAAAGTGGAAGAGCGAGCGAATGGAAAGAAGGGGTTTTCAAATAATAACGGCAGGCGGTGAAAGCAAAGGAAAGTTAAGAAAAGAATGATAATAATAGAATGAAAGCGATTATGCAATGAGATAATGGGCGAATAAAAGTAAACAAAAANCTTAAAAAAAA] [+] EMBL AGA281775 [AAATCAAATAAACTAAATCCCCGCCAGGCTGAACTAGGCCCAGGCCCATTCATATGGTACGCGTGGTCCACGGTTTGGGAACAAAACTGCAAACACCATTGCGTACAGCGGCAGTGTACTGCAATTGATTCGAGAAATGGAAAACAGAAAGTCTAAATCTTGGCGATCAACCCAACCAGCGCTCTCTAGTAGTAGCGGTAGTAGTAGTAGTGGTAGTAGTAGATAACTTCTGCTTAACTCCCGGAGTGGTAACATCCGTGTGGCTTATTTGTGTCTGCCCGGATGTCCTATATGTTGATCATGTATGCCGTGCGCTTATATAAATATGCATCAGCTGCTGCGCAACGCAGCGAACGCAGCCGCGAGTCGATTTTGTTTATGTGTTCTAAGAATTTTGCAATTTATTGTGT ] [+] EMBL AGA282448 [AAATCAAATAAACTAAATCCCCGCCAGGCTGAACTAGGCCCAGGCCCATTCATATGGTACGCGTGGTCCACGGTTTGGGAACAAAACTGCAAACACCATTGCGTACAGCGGCAGTGTACTGCAATTGATTCGAGAAATGGAAAACAGAAAGTCTAAATCTTGGCGATCAACCCAACCAGCGCTCTCTAGTAGTAGCGGTAGTAGTAGTAGTGGTAGTAGTAGATAACTTCTGCTTAACTCCCGGAGTGGTAACATCCGTGTGGCTTATTTGTGTCTGCCCGGATGTCCTATATGTTGATCATGTATGCCGTGCGCTTATATAAATATGCATCAGCTGCTGCGCAACGCAGCGAACGCAGCCGCGAGTCGATTTTGTTTATGTGTTCTAAGAATTTTGCAATTTATTGTGT ] [-] EMBL AGA280822 [ TCAGCTGCTGCGCAACGCAGCGAACGCAGCCGCGAGTCGATTTTGTTTATGTGTTCTAAGAATTTTGCAATTTATTGTGTATAAAAGCGGAAGTAAGCAAGCAAACAAACAAAAAAGCAAAAATACACAGTGCAGTGCGATAGCCATTTTTTTCAGCTATTCTCAAGAAAAAACCCGCCCGATGCATTAAAGAAGCTTGGATGCGGGATAAAGTGGAAGAGCGAGCGAATGGAAAGAAGGGGTTTTCAAATAATAACGGCAGGCGGTGAAAGCAAAGGAAAGTTAAGAAAAGAATGATAATAATAGAATGAAAGCGATTATGCAATGAGATAATGGGCGAATAAAAGTAAACAAAAANCTTAAAAAAAA] [-] EMBL AGA280078 [ CAGCTGCTGCGCAACGCAGCGAACGCAGCCGCGAGTCGATTTTGTTTATGTGTTCTAAGAATTTTGCAATTTATTGTGTATAAAAGCGGAAGTAAGCAAGCAAACAAACAAAAAAGCAAAAATACACAGTGCAGTGCGATAGCCATTTTTTTCAGCTATTCTCAAGAAAAAACCCGCCCGATGCATTAAAGAAGCTTGGATGCGGGATAAAGTGGAAGAGCGAGCGAATGGAAAGAAGGGGTTTTCAAATAATAACGGCAGGCGGTGAAAGCAAAGGAAAGTTAAGAAAAGAATGATAATAATAGAATGAAAGCGATTATGCAATGAGATAATGGGCGAATAAAAGTAAACAAAAANCTTAAAAAAAA] consensusID : consensus_8628#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 570 fasta sequence [CCCCCAGGGTTTATTAGAGGTCGGCAGCAATCCTCCAAAAAAATCGATTTGCTACGTGTGCTATAATAGCAGTGTTTGAATTAAGTTTCATAAATTAACGATTATCCTTATTGAGAGCAAAATACAAAGCAAAGCAAACACAGCATAATTATCAAAATAAGCAACAAACTAACAAACAAAAGAAATGCAAACGAAACAAATCAAAAAGGTGCGCCCAACGAGACAGTAAACAGATACTCTAGAACTACAAAAATACCTCTATTTGTGTGTAATAGTCAATAATGAGTAAGGCATCCAGTGCGCCGAACAGCAAGCAGATCAGCAGCAGCAGCAGCAGAAGCAGCAAATGCCAGTATGATATTTCTTTAGCGTATTTGTGGCGTCTGTGAGTAGAGCGAATGTGCGCGGATGAAGCATGCTAACGTGCAGCCAACGACAACGGGAGGAATACTAATATTAAGCCACAGTAATCGAATCCATCTACATCTGCAGGCAACACATTGCAAGTGCAGCAACAAGCATCAACAAACAAACAAACACGAGCAAAATCACATGTTAACCGAACTGGAA] [+] EMBL AL697542 [CCCCCAGGGTTTATTAGAGGTCGGCAGCAATCCTCCAAAAAAATCGATTTGCTACGTGTGCTATAATAGCAGTGTTTGAATTAAGTTTCATAAATTAACGATTATCCTTATTGAGAGCAAAATACAAAGCAAAGCAAACACAGCATAATTATCAAAATAAGCAACAAACTAACAAACAAAAGAAATGCAAACGAAACAAATCAAAAAGGTGCGCCCAACGAGACAGTAAACAGATACTCTAGAACTACAAAAATACCTCTATTTGTGTGTAATAGTCAATAATGAGTAAGGCATCCAGTGCGCCGAACAGCAAGCAGATCAGCAGCAGCAGCAGCAGAAGCAGCAAATGCCAGTATGATATTTCTTTAGCGTATTTGTGGCGTCTGTGAGTAGAGCGAATGTGCGCGGATGAAGCATGCTAACGTGCAGCCAACGACAACGGGAGGAATACTAATATTAAGCCACAGTAATCGAATCCATCTACATCTGCAGGCAACACATTGCAAGTGCAGCAACAAGCATCAACAAACAAACAAACACGAGCAAAATCACATGTTAACCGAACTGGAA] [+] EMBL BX618858 [ TGCAAACGAAACAAAACAAAAAGGTGCG CCAACGAGACAGTAAACAGATACTCTAGAACTACAAAAATACCTCTATTTGTGTGTAATAGTCAATAATGAGTAAGGCATCCAGTGCGCCGAACAGCAAGCAGATCAGCAGCAGCAGCAGCAGAAGCAGCAAATGCCAGTATGATATTTCTTTAGCGTATTTGTGGCGTCTGTGAGTAGAGCGAATGTGCGCGGATGAAGCATGCTAACGTGCAGCCAACGACAACGGGAGGAATACTAATATTAAGCCACAGTAATCGAATCCATCTACATCTGCAGGCAACACATTGCAAGTGCAGCAACAAGCATCAACAAACAAACAAACACGAGCAAAATCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8628#0 GCGCCTCTGTGCCTTCCATTCACGTGTAGAGAGGTTTTTAGCAGCCGAACCGGATGGATG 60 consensus_8628#2 ------------------------------------------------------------ consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 ACACACACACACACACACATTGTCTCTCGGACACACATAGTAGAGCCGCTTTTGCGTGGG 120 consensus_8628#2 ------------------------------------------------------------ consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 GAGCAGGGTTGGAAAAGATAGGAAGAGGATGTAAAAGTTCAGTTTAATGTTTGTTTGTTT 180 consensus_8628#2 ------------------------------------------------------------ consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 GTTTTTTTTTTGGTGCGTTTATTGGCATCCTTTTGCAAGGGAAACAAAACACAACAGCAA 240 consensus_8628#2 ------------------------------------------------------------ consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 ACAGAGTCAAAAAAGGAGAAAGATAGTTCCGTATGCTTATTAGAGGTCGGGAGCAATCC- 299 consensus_8628#2 --------------------------CCCCCAGGGTTTATTAGAGGTCGGCAGCAATCC- 33 consensus_8628#1 ----------------------AAATCAAATAAACTAAATCCCCGCCAGGCTGAACTAGG 38 ** * ** * * * consensus_8628#0 TCCAAAAAAATCGATTTGCTACGTGTG--CTATAAT-----AGCAGTGTTTGAATTAA-G 351 consensus_8628#2 TCCAAAAAAATCGATTTGCTACGTGTG--CTATAAT-----AGCAGTGTTTGAATTAA-G 85 consensus_8628#1 CCCAGGCCCATTCATATGGTACGCGTGGTCCACGGTTTGGGAACAAAACTGCAAACACCA 98 *** ** ** ** **** *** * * * * ** * ** * consensus_8628#0 TTTCATAAATTAACGAT-TATCCTTATTGAGA-GCAAAATACAAAGCAAAGCAAACACAG 409 consensus_8628#2 TTTCATAAATTAACGAT-TATCCTTATTGAGA-GCAAAATACAAAGCAAAGCAAACACAG 143 consensus_8628#1 TTGCGTACAGCGGCAGTGTACTGCAATTGATTCGAGAAATGGAAAACAGAAAGTCTAAAT 158 ** * ** * * * ** ***** * **** *** ** * * * consensus_8628#0 CATAATTATCAAAACAAGCAACAAACT--AACA--AACAAAAGAAATGCAAACGAAACAA 465 consensus_8628#2 CATAATTATCAAAATAAGCAACAAACT--AACA--AACAAAAGAAATGCAAACGAAACAA 199 consensus_8628#1 CTTGGCGATCAACCCAACCAGCGCTCTCTAGTAGTAGCGGTAGTAGTAGTAGTGGTAGTA 218 * * ***** ** ** * ** * * * * ** * * * * * * consensus_8628#0 AACAAAAAGGTGCGCCCAACGAGACAGTAAACAGATACTCTAGAACTACAAAAATACCTC 525 consensus_8628#2 ATCAAAAAGGTGCGCCCAACGAGACAGTAAACAGATACTCTAGAACTACAAAAATACCTC 259 consensus_8628#1 GTAGATAACTTCTGCTTAACT---CCCGGAGTGGTAACATCCGTGTGGCTTATTTGTGTC 275 * ** * ** *** * * * ** * * * * ** consensus_8628#0 TATTTGTGTGTAATAGTCAATAATGAGTAAGGCATCCAGTGCGCCGAACAGCAAGCAGAT 585 consensus_8628#2 TATTTGTGTGTAATAGTCAATAATGAGTAAGGCATCCAGTGCGCCGAACAGCAAGCAGAT 319 consensus_8628#1 TGCCCGGATGTCCTAT---ATGTTGA-TCATGTATGCCGTGCGCT------TATATAAAT 325 * * *** ** ** *** * * * ** * ****** * * ** consensus_8628#0 CAGCAGCAGCAGCAGCAGAA-GCAGCAAATACCAGTATGATATTTCTTTAGCGTATTTGT 644 consensus_8628#2 CAGCAGCAGCAGCAGCAGAA-GCAGCAAATGCCAGTATGATATTTCTTTAGCGTATTTGT 378 consensus_8628#1 ATGCATCAGCTGCTGCGCAACGCAGCGAACGCAGCCGCGA-GTCGATTTTGTTTATGTGT 384 *** **** ** ** ** ***** ** * ** * *** * *** *** consensus_8628#0 GGCGTCTGTGAGTAGAGCGAATGTGCGCGGATGAA---GCATGCTAACGTGCAGCCAACG 701 consensus_8628#2 GGCGTCTGTGAGTAGAGCGAATGTGCGCGGATGAA---GCATGCTAACGTGCAGCCAACG 435 consensus_8628#1 ----TCTAAGAATTTTGCAATTTATTGTGTATAAAAGCGGAAGTAAGCAAGCAAACAAAC 440 *** ** * ** * * * * ** ** * * * * * *** *** consensus_8628#0 ACAACGGGAGGAATAC-TAATATTAAGCCACAATAATCGAATCCATCTACATCTGCAGGC 760 consensus_8628#2 ACAACGGGAGGAATAC-TAATATTAAGCCACAGTAATCGAATCCATCTACATCTGCAGGC 494 consensus_8628#1 AAAAAAGCAAAAATACACAGTGCAGTGCGATAGCCATTTTTTTCAGCTAT-TCTCAAGAA 499 * ** * * ***** * * ** * * ** * ** *** *** ** consensus_8628#0 AACACATTGCAAGTGCAGCAAC-AAGCATCAACAAACAAACAAACACGAGCAAAATCACA 819 consensus_8628#2 AACACATTGCAAGTGCAGCAAC-AAGCATCAACAAACAAACAAACACGAGCAAAATCACA 553 consensus_8628#1 AAAACCCGCCCGATGCATTAAAGAAGCTTGGATGCGGGATAAAGTGGAAGAGCGAGCGAA 559 ** ** * **** ** **** * * * ** ** * * * consensus_8628#0 TGTTAACCGAACTGGAAATCAAATAAACTAAATCATCGCCAGGCTGAACTAGGCCCAGAC 879 consensus_8628#2 TGTTAACCGAACTGGAA------------------------------------------- 570 consensus_8628#1 TGGAAA--GAAGGGGTTTTCAAATAATAACGGCAGGCGGTGAAAGCAAAGGAAAGTTAAG 617 ** ** *** ** consensus_8628#0 CCATTCATATGGTACGCGTGGTCCACGGTTGGGAACAAAACTGCAAACACCACAGCGTAC 939 consensus_8628#2 ------------------------------------------------------------ consensus_8628#1 AAAAGAATGATAATAATAGAATGAAAGCGATTATGCAATGAGATAATGGGCGAATAAAAG 677 consensus_8628#0 AGTGGAGGCGGTGTACTGCAATTGATTCGAGAAATGGAAAACAGAAAGTCCAAATCGCCA 999 consensus_8628#2 ------------------------------------------------------------ consensus_8628#1 TAAACAAAAANCTTAAAAAAAA-------------------------------------- 699 consensus_8628#0 AGTCAACCCAACCAGCGCTCTCTAGTAGTAGTGGTAGTAGTAGATAACTTCTGCTTAACT 1059 consensus_8628#2 ------------------------------------------------------------ consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 CTCGGAGTGGTAACATCCGTGTGGCTTATTTGTGTCTGCCCGGATGTCGTATATGTTGAT 1119 consensus_8628#2 ------------------------------------------------------------ consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 CATGCATGCCGTGCGCTTATATAAATATGCATCAGCTGCTGCGCAACGCAGCGAACGCAG 1179 consensus_8628#2 ------------------------------------------------------------ consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 CCGCGAGTCGATTTTGTTTATGTGTGCTAAGAATTTTGCAATTTATTGTGTATAAAAGTG 1239 consensus_8628#2 ------------------------------------------------------------ consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 GAAGCAAGCAAACAAACAGGCAAAAAAGCTGAAACACAGTGCAGCGCGATAGCTATTTTT 1299 consensus_8628#2 ------------------------------------------------------------ consensus_8628#1 ------------------------------------------------------------ consensus_8628#0 TTCAGC 1305 consensus_8628#2 ------ consensus_8628#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||