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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1283 fasta sequence
[CCGCGGACGCGTGGGGCGTGAGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGCTTCCGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGCAGGACCACGGTGAAGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACTCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAATGGACAGTGGATCGATTGGGCGCCCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAGGAGAAGTCGATGCGCGGGAAGCTTGATCACACCCGAGTATGTACTAACAGCGGCACATTGTGTTAAGAAACCGCAAGGGATGTTGTTGTATGTCAGTGCGCTGCACGTTAAGCACGACACAGTGTC-GGGTGGTTA-CCAGGGAGATGTTGAGCCAATGTACGTGCGGGAGGCAATTATTCACGAGCAGTACAACACCACCACACGTGATCATGATATTGCGTTGCTGCGGCTAAACGGAAGCGTTACGCAGGAAGGTAACTCACCCAGCCCGATCTGTATTCCGATGGGAAAGAAGCATGATCCAGTTGCTTCCGTTGGATACACACTTAGCTGTTTCGGTTGGGGTCTTAATGCTTACGGAAAGCCCAATGACAGCAAGCAGTGGATGACACTGGAACGTATCTCGCTGGAACTGTGCCAGGCAAGGATGGACTCGTTGAGAGTGGCCCTGGCCGGGAGGGCGATCATTTCGGAACGAAATATCTGTACTATTACCATCACTGGGAATGACGCATTTTCGGGCTTTTCCGGGGGTCCGCTGATGTATCGGAAGGATGGCACCTGGTACTTGATTGGGTTGATTAATTATGGAGTCGGTGCCACGAGCAGTGAGTTCCCGGTAGTTTCCTTAAACGTTCAACAGTACACGGACTGGATCTTGGACAACATTCAACAACGGCACTGATGCTTCCAGCTGCTGTGATAGTATTATGTTTGTAGTGCGACACACACACATAAACCTTCCCTTATCGT]
[+] EMBL BM628720 [CCGCGGACGCGTGGGGCGTGAGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGGAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGCTTCCGGCGCTTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGCAGGACCACGGTGATGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACTCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAATGGACAGTGGATCGATTGGGCGCGCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAGGAGAAGTCGATGCGCGGGAAG ]
[+] EMBL BM581104 [ ccgGTGAGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGCAGGACCACGGTGAAGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACTCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAATGGACAGTGGATCGATTGGGCGCCCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAGGAGAAGTCGATGCGCGGGAAGCTTGATCACACCCGAGTATGTACTAACAGCGGCACATTGTGTTAAGAAACCGCAAGGGATGTTGTTGTATGTCAGTGCGCTGCACGTTAAGCACGACACAGTGTC GGGTGGTTACCCAGGGAGATGT ]
[+] EMBL BX603915 [ GAGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAAGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATG ]
[+] EMBL BM642111 [ ccgGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGCAGGACCACGGTGAAGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACTCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAATGGACAGTGGATCGATTGGGCGCCCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAGGAGAAGTCGATGC ]
[+] EMBL BX624936 [ GACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGCAGGACCACGGTGAAGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACTCGACTCGGACAGCTGTCTGCAGACGCNCCTCGGAATGGACAGTGGATCGATTGGGCGCCCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAGGAGAAGTCGATGCGCGGGAAGCTTGATCACACCCGAGTATGTACTAACAGCGGCACATTGTGTTAAGAAACCGCAAGGGATGTTGTTGTATGTCAGTGCGCTGCACGTTAAGCACGACACAGTGTC GGGTGGTTA CCAGGGAGATGTTGAGCCAATGTACGTGCGGGAGGCAATTATTCACGAGCAGTACAACACCACCACACGTGATCATGATATTGCGTTGCTGCGGCTAAACGGAA ]
[+] EMBL BX614224 [ ATGGGAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGCTTCCGG ]
[+] EMBL BX618925 [ GGAGCTTCCGGCGCATGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGGCGGCGCAGCAGGACCACGGTGAAGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACGCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAAGGGACAGTGGAACGAagg ]
[+] EMBL BX609140 [ CGAGTATGTACTAACAGCGGCACATTGTGTTAAGAAACCGCAAGGGATGTTGTTGTATGTCAGTGCGCTGCACGTTAAGCACGACACAGTGTCGGGGTGGTTA CCAGGGAGATGTTGAGCCAATGTACGTGCGGGAGGCAATTATTCACGAGCAGTACAACACCACCACACGTGATCATGATATTGCGTTGCTGCGGCTAAACGGAAGCGTTACGCAGGAAGGTAACTCACCCAGCCCGATCTGTATTCCGATGGGAAAGAAGCATGATCCAGTTGCTTCCGTTGGATACACACTTAGCTGTTTCGGTTGGGGTCTTAATGCTTACGGAAAGCCCAATGACAGCAAGCAGTGGATGACACTGGAACGTATCTCGCTGGAACTGTGCCAGGCAAGGATGGACTCGTTGAGAGTGGCCCTGGCCGGGAGGGCGATCATTTCGGAACGAAATATCTGTACTATTACCATCACTGGGAATGACGCATTTTCGGGCTTTTCCGGGGGTCCGCTGATGTATCGGAAGGATGGCACCTGGTACTTGATTGGGTTGATTAATTATGGAGTCGGTGCCACGAGCAGTGAGTTCCCGGTAGTTTCCTTAAACGTTCAACAGTACACGGACTGGATCTTGGACAACATTCAACAACGGCACTGATGCTTCCAGCTGCTGTGATAGTATTATGTTTGTAGTGCGACACACACACATAAACCTTCCCTTATCGT]
[+] EMBL BX610351 [ gGGAAGACACTGGAACGTATCTCGCTGGAACGGTGCCAGGCAAGGATGGACTCGTTGAGAGTGGCCCTGGCCGGGAGGGCGATCATTTCGGAACGAAATACCTGGACTATTACCATCACGGG ]
consensusID : consensus_8629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[CCANGTGTTAAATNCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGACAGTGACCACGGTGAAGGTACCGATGCCAGAACCGGACTGANGAAAACTGCCATACGTACGAATTCCAGTACANGCGTAGTCTGACAGACTGTCTGTCAGGANNNGNGCTCAGGTNNATAGTCACATGTGGATCCANAGTCGCGTCTCGCATCCGTTCGATTCGTGTCGTGTTGGATGTGTCTATCAACCTATCAGAGGGT]
[+] EMBL AL697492 [CCANGTGTTAAATNCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGACAGTGACCACGGTGAAGGTACCGATGCCAGAACCGGACTGANGAAAACTGCCATACGTACGAATTCCAGTACANGCGTAGTCTGACAGACTGTCTGTCAGGANNNGNGCTCAGGTNNATAGTCACATGTGGATCCANAGTCGCGTCTCGCATCCGTTCGATTCGTGTCGTGTTGGATGTGTCTATCAACCTATCAGAGGGT]
consensusID : consensus_8629#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[TCGGCCGAGTGTTCTCAGCGTGAGCTACGTAATAGACTTTAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCCAGCAGGACCACGGTGGAAGGTACCGCATGCCAGAACCGGACGAGGACAATTCCATACT]
[+] EMBL AL934588 [TCGGCCGAGTGTTCTCAGCGTGAGCTACGTAATAGACTTTAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCCAGCAGGACCACGGTGGAAGGTACCGCATGCCAGAACCGGACGAGGACAATTCCATACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8629#0 CCG--CGGACGCGTGGGGCGTGAGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGT 58
consensus_8629#2 TCGGCCGAGTGTTCTCAGCGTGAGCTACGTAATAGACTTTAA-TTAGTGAAAAATTCCGT 59
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 TGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTA 118
consensus_8629#2 TGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTA 119
consensus_8629#1 ----------------------------------------CCANGTGTTAAATNCGTTGT 20
** *** **
consensus_8629#0 TTGTACTACTCTGCATAAT-ACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGT 177
consensus_8629#2 TTGTACTACTCTGCATAAT-ACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGT 178
consensus_8629#1 TTTCAGTACTCACTTTTGTGATTGTTGTGTTT--------GGAAAGTGTCGTTTGGGCGT 72
** * ***** * * * * *** *** ********************
consensus_8629#0 GGACCATCGTGCAGAACTTCTACCGGAACGCAGGG-ATGGTGTGTGGGTTTGAAACACTG 236
consensus_8629#2 GGACCATCGTGCA-AACTTCTACCGGAACGCAGGG-ATGGTGTGTGGGTTTGAAACACTG 236
consensus_8629#1 GGACCATCGTGCAGAACTTCTACCGGAACGCAGGGGATGGTGTGTGGGTTTGAAACACTG 132
************* ********************* ************************
consensus_8629#0 TCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCT 296
consensus_8629#2 TCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCT 296
consensus_8629#1 TCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCT 192
************************************************************
consensus_8629#0 TATTGGTGCTTCCGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGA 356
consensus_8629#2 TATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGA 356
consensus_8629#1 TATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGA 252
******** *** ***********************************************
consensus_8629#0 CATTCGTCGGCGC-AGCAG-GACCACGGTG-AAGGTACCG-ATGCCAGAACCGGAC-GAG 411
consensus_8629#2 CATTCGTCGGCGCCAGCAG-GACCACGGTGGAAGGTACCGCATGCCAGAACCGGAC-GAG 414
consensus_8629#1 CATTCGTCGGCGCAGACAGTGACCACGGTG-AAGGTACCG-ATGCCAGAACCGGACTGAN 310
************* *** ********** ********* *************** **
consensus_8629#0 GACAATT-CCATACTCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAATGGACAGTGG 470
consensus_8629#2 GACAATT-CCATACT--------------------------------------------- 428
consensus_8629#1 GAAAACTGCCATAC-------GTACGAATTCCAGTACANGCGTAGTCTGACAGACTGTCT 363
** ** * ******
consensus_8629#0 ATCGATTGGGCGCCCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAG 530
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 GTCAGGANNNGNGCTCAGGTNNATAGTCACATGTGGATCCANAGTCGCGTCTCGCATCCG 423
consensus_8629#0 GAGAAGTCGATGCGCGGGAAGCTTGATCA-CACCCGAGTATGTACTAACAGCGGCACATT 589
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 TTCGATTCGTGTCGTGTTGGATGTGTCTATCAACCTATCAGAGGGT-------------- 469
consensus_8629#0 GTGTTAAGAAACCGCAAGGGATGTTGTTGTATGTCAGTGCGCTGCACGTTAAGCACGACA 649
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 CAGTGTCGGGTGGTTACCAGGGAGATGTTGAGCCAATGTACGTGCGGGAGGCAATTATTC 709
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 ACGAGCAGTACAACACCACCACACGTGATCATGATATTGCGTTGCTGCGGCTAAACGGAA 769
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 GCGTTACGCAGGAAGGTAACTCACCCAGCCCGATCTGTATTCCGATGGGAAAGAAGCATG 829
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 ATCCAGTTGCTTCCGTTGGATACACACTTAGCTGTTTCGGTTGGGGTCTTAATGCTTACG 889
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 GAAAGCCCAATGACAGCAAGCAGTGGATGACACTGGAACGTATCTCGCTGGAACTGTGCC 949
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 AGGCAAGGATGGACTCGTTGAGAGTGGCCCTGGCCGGGAGGGCGATCATTTCGGAACGAA 1009
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 ATATCTGTACTATTACCATCACTGGGAATGACGCATTTTCGGGCTTTTCCGGGGGTCCGC 1069
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 TGATGTATCGGAAGGATGGCACCTGGTACTTGATTGGGTTGATTAATTATGGAGTCGGTG 1129
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 CCACGAGCAGTGAGTTCCCGGTAGTTTCCTTAAACGTTCAACAGTACACGGACTGGATCT 1189
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 TGGACAACATTCAACAACGGCACTGATGCTTCCAGCTGCTGTGATAGTATTATGTTTGTA 1249
consensus_8629#2 ------------------------------------------------------------
consensus_8629#1 ------------------------------------------------------------
consensus_8629#0 GTGCGACACACACACATAAACCTTCCCTTATCGT 1283
consensus_8629#2 ----------------------------------
consensus_8629#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||