These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1261 fasta sequence [GCCAGATCGCCACGAGGTCCGATCGATCGCTGCCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC-GGTGACGATGCCACCGGTGAGCTACAACCCTG-CCGGGACCGATCC-GAAGCCTCACGTGATG-GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG-TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG-CAGGCTACCAA-CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGCTTATTTTGTGTCTGTGTGNGAGATATCATATTTTCTTCTTGTAGTCACCCAAACCACCTCCAACACCAGCTACATCGTGGCGTGTTCGGTTGGCAGTGTCAAATAATTTCATCAATGCTATATTTTTGTTTTCCTCCCCGCAAGCAACGTTTGGTTTCTCCAATTCCAATCCCTTGCTGCAACTGGTGCTTTAATGATCATGAAGCCATCGCACACGGCAGGGACACTCCTGGCTGATCAAGCCATTTGTCTGGATTGGGTTTCGGCCCTAAGGAGTGGGGGAAGAAGAAAAAAAACACCCATTCTCCATGGAGGAACTCTTTCAACGCAATATTGTAGCGTTTGCTGATAAGTTTTGACAGCTTAATATGATACGGGGCTAAACGATGGGGGCAAAAGAAACATTTTGTTTTATGGGTTATCAAAACATAAGCTGGCATAAGGAGGAAGAATTGCGCATTCACTTGTTGATCTGTACAGCGCGANGTAAATTATGTTTTATTATTGAGTGGTTAAATAATGGTAAATATGTATTATTAATAAACTGGAG] [+] EMBL BX466608 [GCCAGATCGCCACGAGGTTTAATCGATCGCTGCCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCACGGGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGNTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAAACAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAAGCCAAAAAAACCGGACTACGAACCG TTCCATCCTTCCGGNCTATCGATTACATCGCTTCTGGTTAA ] [+] EMBL AL695264 [ TCCGA GGTTTCTG CCGGGAGAGGTTGAATCTTAGAAAATGT CCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCA CG TCCAGCAG CCCGAGCGCACGTGGTCGAACCGA CTGGATCAC GGTGACGATGCCACCGGTGAGCTA AA CCTGTCTGGGACCGATCCTGAAGCCTCACGTGATGNGAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAG CGCCGTTGGTTGGGCCAGTGG CGATGCCCTATCCCAGCATGCCGGTCCTG CGTACCCGTACCACGG AATCAGTGGTGCAACCAG CGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTAGCTTTTCCGACAGGCTA CAA CAAAAAAA ] [+] EMBL BM598923 [ CCGATCGATCGCTGCCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGG ] [+] EMBL BX606593 [ CTACCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAATGCTGCTTGTCGGTGTGTTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGG ] [+] EMBL BM577166 [ ccGCCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGCTTATTTTGTGTCTGTG ] [+] EMBL BM605210 [ ccgGCCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAG ] [+] EMBL BX626007 [ AGAGGTTGAATCTTAGANAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTTTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGCTTATTTTGTGTCTGNGTGNGAGATATCATATTTTCTTCTTGTAGTCAC ] [+] EMBL BM591150 [ ccgGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGC ] [+] EMBL BX619108 [ AATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGANAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTNCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGANTCATNTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATNCCTTCCTACCCAGTGATGCTTNATGTGGCATTCAC ] [+] EMBL BX622289 [ TACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGCTTATTTTGTGTCTGTGTGTGAGATATCATATTTTCTTCTTGTAGTCACCCAAACCACCTCCAACACCAGCTACATCGTGGCGTGTTCGGTTGGCAGTGTCAAATAATTTCATCAATGCTATATTTTTGTTTTCCTCCCCGCAAGCAACGTTTGGTTTCTCCAATTCCAATCCCTTGCTGCAACTGGTGCTTTAATGATCATGAAGCCATCGCACACGGCAGGGACACTCCTGGCTGATCAAGCCATTTGTCTGGATTGGGTTTCGGCCCTAAGGAGTGGGGGAAGAAGAAAAAAAACACCCATTCTCCATGGAGGAACTCTTTCAACGCAATATTGTAGCGTTTGCTGATAAGTTTTGACAGCTTAATATGATACGGGGCTAAACGATGGGGGCAAAAGAAACATTTTGTTTTATGGGTTATCAAAACATAAGCTGGCATAAGGAGGAAGAATTGCGCATTCACTTGTTGATCTGTACAGCGCGANGTAAATTATGTTTTATTATTGAGTGGTTAAATAATGGTAAATATGTATTATTAATAAACTGGAG] consensusID : consensus_8637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [CCGGATTTATACCGGGAGAGGTTGAATCTNAAAAATGTCCGTCTGCAATGCTGCTTGTCGGTGTGTTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGCACGCAGACACCACCGCTCCAGCAGNCCCGANGCTGCACGTTGTCGAACCGACCTGGATCACGGTGACGATGCCACCGGTGAGCTACAACCCTGCCGGGACCGATCCGAAGCCTCACGTGATGGAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGATGGTGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACG] [+] EMBL AL933645 [CCGGATTTATACCGGGAGAGGTTGAATCTNAAAAATGTCCGTCTGCAATGCTGCTTGTCGGTGTGTTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGCACGCAGACACCACCGCTCCAGCAGNCCCGANGCTGCACGTTGTCGAACCGACCTGGATCACGGTGACGATGCCACCGGTGAGCTACAACCCTGCCGGGACCGATCCGAAGCCTCACGTGATGGAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGATGGTGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8637#0 GCCAGATCGCCACGAGGTCCGATCGATCGCTGCCCGGGAGAGGTTGAATCTTAGAAAATG 60 consensus_8637#1 ----------------------CCGGATTTATACCGGGAGAGGTTGAATCTNA-AAAATG 37 ** ****************** * ****** consensus_8637#0 TCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCA 120 consensus_8637#1 TCC-GTCTGCAA-TGCTGCTTGTCGGTGTGTTACTACCCATCGCGACACTCGCCGCCCCA 95 *** ******** ************* *** ***************************** consensus_8637#0 ACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTC 180 consensus_8637#1 ACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTC 155 ************************************************************ consensus_8637#0 CCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAG--CGCACGTGGTCGAACCGA 238 consensus_8637#1 CCATCCGGCACGCAGACACCACCGCTCCAGCAGNCCCGANGCTGCACGTTGTCGAACCGA 215 ******** ************************ ***** ****** ********** consensus_8637#0 CCTGGATCACGGTGACGATGCCACCGGTGAGCTACAACCCTGCCGGGACCGATCCGAAGC 298 consensus_8637#1 CCTGGATCACGGTGACGATGCCACCGGTGAGCTACAACCCTGCCGGGACCGATCCGAAGC 275 ************************************************************ consensus_8637#0 CTCACGTGATGGAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGT 358 consensus_8637#1 CTCACGTGATGGAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGA 335 *********************************************************** consensus_8637#0 TGGTGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACG 418 consensus_8637#1 TGGTGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACG 395 ************************************************************ consensus_8637#0 GCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGA 478 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 GGAAAACCGAATCCGCGTGTTTACCTTTTCCGCAGGCTACCAACCAAAAAAACCGGACTA 538 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 CGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCC 598 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 CACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCC 658 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 CTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGCTTATTTT 718 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 GTGTCTGTGTGNGAGATATCATATTTTCTTCTTGTAGTCACCCAAACCACCTCCAACACC 778 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 AGCTACATCGTGGCGTGTTCGGTTGGCAGTGTCAAATAATTTCATCAATGCTATATTTTT 838 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 GTTTTCCTCCCCGCAAGCAACGTTTGGTTTCTCCAATTCCAATCCCTTGCTGCAACTGGT 898 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 GCTTTAATGATCATGAAGCCATCGCACACGGCAGGGACACTCCTGGCTGATCAAGCCATT 958 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 TGTCTGGATTGGGTTTCGGCCCTAAGGAGTGGGGGAAGAAGAAAAAAAACACCCATTCTC 1018 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 CATGGAGGAACTCTTTCAACGCAATATTGTAGCGTTTGCTGATAAGTTTTGACAGCTTAA 1078 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 TATGATACGGGGCTAAACGATGGGGGCAAAAGAAACATTTTGTTTTATGGGTTATCAAAA 1138 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 CATAAGCTGGCATAAGGAGGAAGAATTGCGCATTCACTTGTTGATCTGTACAGCGCGANG 1198 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 TAAATTATGTTTTATTATTGAGTGGTTAAATAATGGTAAATATGTATTATTAATAAACTG 1258 consensus_8637#1 ------------------------------------------------------------ consensus_8637#0 GAG 1261 consensus_8637#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||