These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_864#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [CCGCCCACGCGTCCGGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTTTAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTTATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCTTCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGACGCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTTAATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGTGAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCGAACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAACCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGTTGCTTAAGTCAACTTGAGCACAGACAGAATAATAATAGCTGTAATGGAAAGAAGGATTAACACTTTCGAATGTTGTTTGTTGAAGATGTTTGTTTAAAGCAGC] [+] EMBL BM641120 [CCGCCCACGCGTCCGGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTTTAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTTATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCTTCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGACGCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTTAATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGTGAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCGAACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAACCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGTTGCTTAAGTCAACTTGAGCACAGACAGAATAATAATAGCTGTAATGGAAAGAAGGATTAACACTTTCGAATGTTGTTTGTTGAAGATGTTTGTTTAAAGCAGC] consensusID : consensus_864#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CCGCCCACGCGTCCGCGCTTGCGGTGGAGTGAGGTGGCACCTCCTCCGCCCTAGAGTTAGTAAGCGAGCAGCAGCGAGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTTTAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTTATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCTTCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGACGCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTTAATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGTGAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCGAACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAACCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGTTGCTTAAGTCA] [+] EMBL BM616451 [CCGCCCACGCGTCCGCGCTTGCGGTGGAGTGAGGTGGCACCTCCTCCGCCCTAGAGTTAGTAAGCGAGCAGCAGCGAGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTTTAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTTATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCTTCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGACGCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTTAATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGTGAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCGAACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAACCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGTTGCTTAAGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_864#0 ------------------------------------------------------------ consensus_864#1 CCGCCCACGCGTCCGCGCTTGCGGTGGAGTGAGGTGGCACCTCCTCCGCCCTAGAGTTAG 60 consensus_864#0 ---CCGCCCACGCGTCCGGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTT 57 consensus_864#1 TAAGCGAGCA-GCAGCGAGCCAAAGGCTGAGTGATCTGCGACCTATTGCCCTAGCGTGTT 119 ** ** ** * ****************************************** consensus_864#0 TAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTT 117 consensus_864#1 TAGTAACGGTTCCCCTGGACGACGAACCAAATGCTTTTTTTTTAGGTTTTAATGTGAGTT 179 ************************************************************ consensus_864#0 ATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCT 177 consensus_864#1 ATGCTTAACCACTCGGATGCTACCGAGCTGACGGAATCCGGATCCGTGTTCGAACAAGCT 239 ************************************************************ consensus_864#0 TCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGAC 237 consensus_864#1 TCCAGCCGCGTTCTCAATATTTGAGAATTACTGTAAGCACTCGAATTACGCGAAAATGAC 299 ************************************************************ consensus_864#0 GCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTT 297 consensus_864#1 GCGTAATGCTATCCCCCGTCGCATGCGTGCGATGATCGAATTGAACATTTTGTTTTACTT 359 ************************************************************ consensus_864#0 AATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGT 357 consensus_864#1 AATCCCGTGACAGCGCGTATGTTGTTATTGTGTGTGTTAGTGTGTGTTCGTACACACTGT 419 ************************************************************ consensus_864#0 GAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCG 417 consensus_864#1 GAAATATGGACGCGCGCGCCTTTTACGCGGTCTCACCGAAAGTGATCCGTTTTTTTATCG 479 ************************************************************ consensus_864#0 AACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAA 477 consensus_864#1 AACCGCGCTATGCTGCATATGCTGCTACTTAGCAGAAATTATTTATGTTTTTAACCAAAA 539 ************************************************************ consensus_864#0 CCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGT 537 consensus_864#1 CCAGCATGAAAACATTGCAGATGGTTTGGACGTGAAATGAAAGTTTGGTTATGCCTAAGT 599 ************************************************************ consensus_864#0 TGCTTAAGTCAACTTGAGCACAGACAGAATAATAATAGCTGTAATGGAAAGAAGGATTAA 597 consensus_864#1 TGCTTAAGTCA------------------------------------------------- 610 *********** consensus_864#0 CACTTTCGAATGTTGTTTGTTGAAGATGTTTGTTTAAAGCAGC 640 consensus_864#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||