These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTGGTCCGGGGAGTCTCTCTCTCTCTCTCTCTCTCTCCATCCCGATCGATACAATTGTTTGAACAATCTTACGCGCTTACCTTGCGCCGAGTGCGTATGAGTCACGTGTCTCCGATTAGACCGTGGCGTTCAGCAATGCAGTCCAAAACCCGAGAGATGTGTTGAATTTCCGCGCACGCACGCACAGTTATGTCGCCTTTTGTTTGAATAAAAAAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATTAGTGTGTGTAATAGTAGCTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGAAAGCGTCTTTGTGCACTTGACATTGAGCGCGGTTTGACAGTCTTCGGTGGGCTGGAACTGCCCTACCCACACCCGTTTCCGGTCATCAAGTGCGACGATGATTTAATAGTCCCCCCTTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] [+] EMBL BM648416 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGGTCCGGGGAGTCTCTCTCTCTCTCTCTCTCTCTCCATCCCGATCGATACAATTGTTTGAACAATCTTACGCGCTTACCTTGCGCCGAGTGCGTATGAGTCACGTGTCTCCGATTAGACCGTGGCGTTCAGCAATGCAGTCCAAAACCCGAGAGATGTGTTGAATTTCCGCGCACGCACGCACAGTTATGTCGCCTTTTGTTTGAATAAAAAAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATTAGTGTGTGTAATAGTAGCTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGAAAGCGTCTTTGTGCACTTGACATTGAGCGCGGTTTGACAGTCTTCGGTGGGCTGGAACTGCCCTACCCACACCCGTTTCCGGTCATCAAGTGCGACGATGATTTAATAGTCCCCCCTTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] consensusID : consensus_8652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 480 fasta sequence [CCGCGGACGCGTGGGCCGGCGCGTTCGATTTCGCAGCCTGGCACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG-AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC-AAAAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] [+] EMBL BM653862 [CCGCGGACGCGTGGGCGGACGCGT GGGTTCGCAGCCTGGCACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AAAAAAGAGGACACGGAGTTTGGAATCGAACACGCGGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGACCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] [+] EMBL BM603457 [ CCGGTGCGTTCGATTTCGCAGCCTGGCACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AAAAAAGAGGACACGGAGTTTGGAATCGAACACGCGGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGACCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] [+] EMBL BM629274 [ CCGGTGCGTTCGATTTCGCAGCCTGGCACGATAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AACAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACACATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] [+] EMBL BM625285 [ CCGGTGCGTTCGATTTCGCAGCCTGGCACGATAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AACAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] [+] EMBL BM603362 [ cCGCGTTCGATTTCGCAGCCTGGCACGATAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGGAAAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AACAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] [+] EMBL BM624607 [ ccgGCGTTCGATTTCGCAGCCTGGCACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCATCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCATTCTTTGCGGCAGCAAAAAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCCTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAACAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] [+] EMBL BM631953 [ ccgGTTCGATTTCGCAGCCTGACACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCT TCCAC TCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AAAAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCAAGGCGAACCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAACAGTGAGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] [+] EMBL BM613963 [ ccgGATTTCGCAGCCTGGCACGATAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AACAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] [+] EMBL BM610568 [ ccgGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AAAAAAGAGGACACGGAGTTTGGAATCGAACACGCGGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGACCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCG ] consensusID : consensus_8652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [AAAAAAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATCAGTGTGTGTGAGTAGTAGCTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGAAAGCGTCTTTGTGCACTTGACATTGAGCGCGGTTTGACAGTGCACAGTCTCTTCGGTGGGCTGGAACTGCCCTACCCACACCCGTTTCCGGTCATCAAGTGCGACGATGATTTAATAGCCCCCCCCCCCCCCCCCGTTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] [+] EMBL BX620225 [AAAAAAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATCAGTGTGTGTGAGTAGTAGCTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGAAAGCGTCTTTGTGCACTTGACATTGAGCGCGGTTTGACAGTGCACAGTCTCTTCGGTGGGCTGGAACTGCCCTACCCACACCCGTTTCCGGTCATCAAGTGCGACGATGATTTAATAGCCCCCCCCCCCCCCCCCGTTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8652#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTGGTCCGGGGAGTCTCTCTCTCTCTCTCTCTC 60 consensus_8652#2 ------------------------------------------------------------ consensus_8652#1 ------------------------------------------------------------ consensus_8652#0 TCTCCATCCCGATCGATACAATTGTTTGAACAATCTTACGCGCTTACCTTGCGCCGAGTG 120 consensus_8652#2 ------------------------------------------------------------ consensus_8652#1 ---------------------------------------CCGCGGACGCGTGGGCCGGCG 21 consensus_8652#0 CGTATGAGTCACGTGTCTCCGATTAGACCGTGGCGTTCAGCAATGCAGTCCAAAACCCGA 180 consensus_8652#2 ------------------------------------------------------------ consensus_8652#1 CGTTCGATTTCGCAGCCTGGCACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCTT 81 consensus_8652#0 GAGATGTGTTGAATTTCCGCGCACGCACGCACAGTTATGTCGCCTTTTGTTTGAATAAAA 240 consensus_8652#2 --------------------------------------------------------AAAA 4 consensus_8652#1 CGTCCAC-CCAACAGGCAGAGGAAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGCAAAA 140 **** consensus_8652#0 AAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATTAGTGTGTGTAA-TAGTAG 299 consensus_8652#2 AAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATCAGTGTGTGTGAGTAGTAG 64 consensus_8652#1 AAGAGGAC-ACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGA 199 ** * * ** * **** ** ** * * * * * consensus_8652#0 CTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGA- 358 consensus_8652#2 CTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGA- 123 consensus_8652#1 TTCTACAGCGCGCAAGTTCA-CGGTCACG-GCGGAGCCGAAAGTGAAGTGCACGTGTGCT 257 * * * * * * * ** ** * *** * * * consensus_8652#0 AAGCGTCT---TTGTGCACTTGACATTGAGCGCGGTTTGACAGT---------CTTCGGT 406 consensus_8652#2 AAGCGTCT---TTGTGCACTTGACATTGAGCGCGGTTTGACAGTGCACAGTCTCTTCGGT 180 consensus_8652#1 GAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGA 317 ** ** *** * * *** ** * * * *** consensus_8652#0 GGGCTGGAACTGCC--CTACCCACACCCGTTTCCGGTCATCAAGT--GCGACGAT-GATT 461 consensus_8652#2 GGGCTGGAACTGCC--CTACCCACACCCGTTTCCGGTCATCAAGT--GCGACGAT-GATT 235 consensus_8652#1 AAG-TAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCC 376 * * * * *** * **** * * * ** * ** * * *** * consensus_8652#0 TAATAGTCCCCCC-----------TTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTC 510 consensus_8652#2 TAATAGCCCCCCCCCCCCCCCCCGTTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTC 295 consensus_8652#1 TAACGGCGATCGT-----------GTACCTCGGGGGAAGCT---TCGCCGCACTCCCGTC 422 *** * * * ** * ** ** **** * **** consensus_8652#0 CTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG 568 consensus_8652#2 CTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG 353 consensus_8652#1 CTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG 480 ********************************************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||