cluster # 866

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Anopheles gambiae
cluster # 866 cluster # 866 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_866#0 length = 654 sequences # 1

consensus_866#1 length = 558 sequences # 1

consensusID : consensus_866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [CCGGTCGGAGAAGCGAAAAACGCATCGTAAGAAAATCCCGTTCCCAATCGATTCCCCCCTTTCGACCAAGCAAAGGAGAGCACACTGGCTGCGGGCGAGCGATCGAGCGAGCGGGTGTGGTGCTGCATTGTTACGACAGTTGAGTTCGGTGCATAGAACCTGGACCCGGGAGGACGACGGAACACCACCAACCTGCTTACTGGGGCTGCATCGAAGTAGGTGCAGTGAAAAGTGATTTCTTGGTCCACACAACAGACACATACACACATACACAGACAGACACTGCAACGCGGTGTGCTGCGAGGGGCCAGGAGCGGACTGGTACGGGGGCCGGAGGAAAGACGGCGGCCACAAGACGTTTCGGGAAGAAGGTGCCCGATTGAAGTAGTAGTAGGCTGCGCGAAAACATCACCATTGTATATGTGTGTATGTGTGTGTGTGCGTGTGGAGACGAGCAAAGTGTGTGCTGGGAAGTGGAATCCTTCGCACCAGTCGTGGTTTAGATTACTTTTCCTTTTTTGAGTTTGAATGGTGCCCGCGATAGAAACTCAAAATTGATTGCCTTCGGAAACCGATTGGCGGCGGCTCTTCGGCAAGGTCCTGCTCGTCCTCGTCGTCGGACGAAGACCTCAATGAACGACCACCACCACCGTC]

[+] EMBL BM616390             [CCGGTCGGAGAAGCGAAAAACGCATCGTAAGAAAATCCCGTTCCCAATCGATTCCCCCCTTTCGACCAAGCAAAGGAGAGCACACTGGCTGCGGGCGAGCGATCGAGCGAGCGGGTGTGGTGCTGCATTGTTACGACAGTTGAGTTCGGTGCATAGAACCTGGACCCGGGAGGACGACGGAACACCACCAACCTGCTTACTGGGGCTGCATCGAAGTAGGTGCAGTGAAAAGTGATTTCTTGGTCCACACAACAGACACATACACACATACACAGACAGACACTGCAACGCGGTGTGCTGCGAGGGGCCAGGAGCGGACTGGTACGGGGGCCGGAGGAAAGACGGCGGCCACAAGACGTTTCGGGAAGAAGGTGCCCGATTGAAGTAGTAGTAGGCTGCGCGAAAACATCACCATTGTATATGTGTGTATGTGTGTGTGTGCGTGTGGAGACGAGCAAAGTGTGTGCTGGGAAGTGGAATCCTTCGCACCAGTCGTGGTTTAGATTACTTTTCCTTTTTTGAGTTTGAATGGTGCCCGCGATAGAAACTCAAAATTGATTGCCTTCGGAAACCGATTGGCGGCGGCTCTTCGGCAAGGTCCTGCTCGTCCTCGTCGTCGGACGAAGACCTCAATGAACGACCACCACCACCGTC]




>consensus_866#0
CCGGTCGGAGAAGCGAAAAACGCATCGTAAGAAAATCCCGTTCCCAATCGATTCCCCCCT
TTCGACCAAGCAAAGGAGAGCACACTGGCTGCGGGCGAGCGATCGAGCGAGCGGGTGTGG
TGCTGCATTGTTACGACAGTTGAGTTCGGTGCATAGAACCTGGACCCGGGAGGACGACGG
AACACCACCAACCTGCTTACTGGGGCTGCATCGAAGTAGGTGCAGTGAAAAGTGATTTCT
TGGTCCACACAACAGACACATACACACATACACAGACAGACACTGCAACGCGGTGTGCTG
CGAGGGGCCAGGAGCGGACTGGTACGGGGGCCGGAGGAAAGACGGCGGCCACAAGACGTT
TCGGGAAGAAGGTGCCCGATTGAAGTAGTAGTAGGCTGCGCGAAAACATCACCATTGTAT
ATGTGTGTATGTGTGTGTGTGCGTGTGGAGACGAGCAAAGTGTGTGCTGGGAAGTGGAAT
CCTTCGCACCAGTCGTGGTTTAGATTACTTTTCCTTTTTTGAGTTTGAATGGTGCCCGCG
ATAGAAACTCAAAATTGATTGCCTTCGGAAACCGATTGGCGGCGGCTCTTCGGCAAGGTC
CTGCTCGTCCTCGTCGTCGGACGAAGACCTCAATGAACGACCACCACCACCGTC

consensusID : consensus_866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [CCGGCAATCACAGAACACCCTCCAACAGAACAGAAAAGCAATTAGCGCAGCTCAAAGCAATAGAAATTGCATATGGCAGCAGCACCAGCATACACTGTGCGGAAGTAATGTTGTTTTGGAAGTTTTCCATTGCCGAAGCCCCGTAGCCAAAAGCAGTGTAGGCGTGCAGCAAAGTAGTGTAGCAAAAAAAAAAGCAGTGCCCACCCATGCCAACACCACCATCCCGAAAAGGGGGCCAATCGGTATCGAAATCGTGCAAAAATTACCCCCCCTTGCCCTCGCCTCCTCCTCAATCGCATCGTACACCACACACCAACACAGGCACAGTGGTGGTGGTGCTGCTGCTGCACCAGCCAGCCGTGACGATGCTTGTTGGGGCAATATAAATGGATGCACTTTTTTCGTGACAACAGCTGCATTGTTACGACAGTTGAGTTCGGTGCATAGAACCTGGACCCGGGAGGACGACGGAACACCACCAACCTGCTTACTGGGGCTGCATCGAAGTAGGTGCAGTGAAAAGTGATTTCTTGGTCCACACAACAGACACATACACAC]

[+] EMBL BM653443             [CCGGCAATCACAGAACACCCTCCAACAGAACAGAAAAGCAATTAGCGCAGCTCAAAGCAATAGAAATTGCATATGGCAGCAGCACCAGCATACACTGTGCGGAAGTAATGTTGTTTTGGAAGTTTTCCATTGCCGAAGCCCCGTAGCCAAAAGCAGTGTAGGCGTGCAGCAAAGTAGTGTAGCAAAAAAAAAAGCAGTGCCCACCCATGCCAACACCACCATCCCGAAAAGGGGGCCAATCGGTATCGAAATCGTGCAAAAATTACCCCCCCTTGCCCTCGCCTCCTCCTCAATCGCATCGTACACCACACACCAACACAGGCACAGTGGTGGTGGTGCTGCTGCTGCACCAGCCAGCCGTGACGATGCTTGTTGGGGCAATATAAATGGATGCACTTTTTTCGTGACAACAGCTGCATTGTTACGACAGTTGAGTTCGGTGCATAGAACCTGGACCCGGGAGGACGACGGAACACCACCAACCTGCTTACTGGGGCTGCATCGAAGTAGGTGCAGTGAAAAGTGATTTCTTGGTCCACACAACAGACACATACACAC]




>consensus_866#1
CCGGCAATCACAGAACACCCTCCAACAGAACAGAAAAGCAATTAGCGCAGCTCAAAGCAA
TAGAAATTGCATATGGCAGCAGCACCAGCATACACTGTGCGGAAGTAATGTTGTTTTGGA
AGTTTTCCATTGCCGAAGCCCCGTAGCCAAAAGCAGTGTAGGCGTGCAGCAAAGTAGTGT
AGCAAAAAAAAAAGCAGTGCCCACCCATGCCAACACCACCATCCCGAAAAGGGGGCCAAT
CGGTATCGAAATCGTGCAAAAATTACCCCCCCTTGCCCTCGCCTCCTCCTCAATCGCATC
GTACACCACACACCAACACAGGCACAGTGGTGGTGGTGCTGCTGCTGCACCAGCCAGCCG
TGACGATGCTTGTTGGGGCAATATAAATGGATGCACTTTTTTCGTGACAACAGCTGCATT
GTTACGACAGTTGAGTTCGGTGCATAGAACCTGGACCCGGGAGGACGACGGAACACCACC
AACCTGCTTACTGGGGCTGCATCGAAGTAGGTGCAGTGAAAAGTGATTTCTTGGTCCACA
CAACAGACACATACACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_866#0      CCGGTCGGAGAAGCGAAAAACGCATCGTAAGAAAATCCCGTTCCCAATCGATTCCCCCCT 60
consensus_866#1      ----------------------------------------CCGGCAATCACAGAACACCC 20
                                                                 *****      * ** 

consensus_866#0      TTCGACCAAGCAAAGGAGAGCACACTGGCTGCGGGCGAGCGATCGAGCGAGCGGGTGTGG 120
consensus_866#1      TCCAAC--AGAACAGAAAAGCA-ATTAGC-GCAGCTCAAAGCAATAGAAATTGCATATGG 76
                     * * **  ** * ** * **** * * ** ** *   *  *    **  *  *  * ***

consensus_866#0      T-GCTGCATTGTTACGACAGTTGAGTTCGGTGCATAGAACCTGGACCCGGGAGGACGACG 179
consensus_866#1      CAGCAGCACCAGCAT-ACACT---GTGCGG---AAGTAATGTTGTTTTGGAAGTTTTCCA 129
                       ** ***     *  *** *   ** ***   *   **  * *    ** **     * 

consensus_866#0      GAACACCACCAACCTGCTTACTGGGGCTGCATCGAAGTAGGTGCAGTGAAAAGTGATTTC 239
consensus_866#1      TTGC----CGAAGCCCCGTA----GCCAAAAGCAGTGTAGGCGTGCAGCAAAGTAGT--- 178
                        *    * ** *  * **    * *   * *   ***** *    * *****  *   

consensus_866#0      TTGGTCCACACAACAGACACATACACACATACACAGACAGACACTGCAACGCGGTGTGCT 299
consensus_866#1      GTAGCAAAAAAAAAAGCAGTGCCCACCCATGCCAACACCACCATCCCGAAAAGG-GGGCC 237
                      * *   * * ** **       *** *** *  * **   **   * *   ** * ** 

consensus_866#0      GCGAGGGGCCAGGAGCGGACTGGTACGGGGGCCGGAGGAAAGACGGCGGCCACAAGACGT 359
consensus_866#1      AATCGGTATCGAAATCGTGCAAAAATTACCCCCCCTTGCCCTCGCCTCCTCCTCAATCGC 297
                         **   *   * **  *    *      **    *            *   *  ** 

consensus_866#0      TTCGGGAAGAAGGTGCCCG-ATTGAAGTAGTAGTAGGCTGCGCGAAAACATCACCATTGT 418
consensus_866#1      ATCGTACACCACACACCAACACAGGCACAGTGGT-GGTGGTGCTGCTGCTGCACCAGC-C 355
                      ***   *  *    **   *  *    *** ** **  * **     *  *****    

consensus_866#0      ATATGTGTGTATGTGTGTGTGTGCGTGTGGAGACGAGCAAAGTGTGTGCTGGGAAGTGGA 478
consensus_866#1      AGCCGTGACGATGCTTGTTGGGGCA-ATATAAATGGATGCACTTTTTTCGTGACAACAGC 414
                     *   ***   ***  ***  * **   *  * * *     * * * * *  *  *   * 

consensus_866#0      ATCCTTCGCACCAGTCGTGGTTTAGATTACTTTTCCTTTTTTGAGTTTGAATGGTGCCCG 538
consensus_866#1      TGCATTGTTACGA----CAGTTGAGTTCGGTGCATAGAACCTGGACCCGGGAGG-----A 465
                       * **   ** *      *** ** *   *          **     *   **      

consensus_866#0      CGATAGAAACTCAAAATTGATTGCCTTCGGAAACCG-ATTGGCGGCGGCTCTTCGGCAAG 597
consensus_866#1      CGACGGAACACCACCAAC--CTGCTTACTGGGGCTGCATCGAAGTAGGTGCAGTGAAAAG 523
                     ***  ***   **  *     *** * * *   * * ** *  *  **  *   *  ***

consensus_866#0      GTCCTGCTCGTCCTCGTCGTCGGACGAAGACCTCAATGAACGACCACCACCACCGTC 654
consensus_866#1      TGATTTCTTGGTCCACACAACAGACACATACACAC---------------------- 558
                         * ** *  *    *  * ***  * **