These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1080 fasta sequence [CCGGGAAGCGATGAAGAGCAAGAAACCGACCTACCCGTCGAAGCAGTTCCTCAAGAGCTACTTCAGCTCGTTCAACAACGATCCGATCGGCAAGCTGGTCGTGGCCAGCACGGAACAGAAGGGTTTCATCAAGGCAAAGGCCCTGTTCGACAGCGGCGAGTACGAGGGCATTGTGGCGGCCTGCACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTGCTGCTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGACGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGCCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC-GGCCC-AAAACC-GGGACG-AATCGGCCATCG-GGCGCATCCGCAAGCGGTTCAAC--GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGG-CT-GCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAAACGCTCGGCACGATCGANGTGCAGCGCGGCAATCTGGTCGAGGCGATCAAGCTGTTCGAGCGGGCGATCGAGCTGGCGCGCACGGAGATGAGCCTGGTGCATCTGTACTCGCTGAAGGATGCGGCGGTCGCGCAGGTGGACGTGGCGAAGAACATGGGCTTGAGTATTAGCAACATTTCAGCCGA] [+] EMBL BM638239 [CCGGGAAGCGATGAAGAGCAAGAAACCGACCTACCCGTCGAAGCAGTTCCTCAAGAGCTACTTCAGCTCGTTCAACAACGATCCGATCGGCAAGCTGGTCGTGGCCAGCACGGAACAGAAGGGTTTCATCAAGGCAAAGGCCCTGTTCGACAGCGGCGAGTACGAGGGCATTGTGGCGGCCTGCACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTGCTGGTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGACGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGCCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGCGGGCCCAAAAACC GGGACG AATCGGC ] [+] EMBL AL695359 [ cccgagntTTTCTCAAGAGCTACTTCAGCTCGTTCAACAACGATCCGATCGGCAAGCTGGTCGTGGCCAGCACGGAACAGAAGGGTTTCATCAAGGCAAAGGCCCTGTTCGACAGCGGCGAGTACGAGGGCATTGTGGCGGCCTGCACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTGCTGCTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGACGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGG CAGGTGTACA ] [+] EMBL BX622869 [ ATCAANGCGAAGGCCCTGTTCGACAGCGCCGAGTACGAGGGCATTGTGGCGGCCTGTACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTACTCCTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGACGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGGCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGTGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC GGCCC AAAACC GAGACG AATCGGCGATCG GGCGCATCCGCAAGCGGTTCAAC GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGATAATGCGCAGATCTACGTGCACCGGGGG CT GCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAAACGCTCGGCACGATCGANGTGCAGCGCGGCAATCTGGTCGANGCGATCAAGCTGTTCGAGCGGGCGATCGAG ] [+] EMBL BX621505 [ GGCCCTGTTCGACAGCGCCGAGTACGAGGGCATTGTGGCGGCCTGTACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTACTCCTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGACGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGGCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGTGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC GGCCC AAAACC GAGACG AATCGGCGATCG GGCGCATCCGCAAGCGGTTCAAC GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGG CT GCTGCAGCTGCAGTGGAAGGGCGACATCGACGANGGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAAACGCTCGGCACGATCGANGTGCAGCGCGGCAATCTG ] [+] EMBL BM596273 [ cCGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGCCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC GGCCC AAAACC GGGACG AATCGGCCATCG GGCGCATCCGCAAGCGGTTCAAC GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGG CT GCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAAACGCTCGGCACGATCGAGGTGCAGCGCGGCAATCTGGTCGAGGCGATCAAGCTGTTCGAGCGGGCG ] [-] EMBL BM590848 [ CTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGCCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC GGCCC AAAACC GGGACG AATCGGCCATCG GGCGCATCCGCAAGCGGTTCAAC GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGG CT GCTGCAGCTGCAGTGGAAGGGCGgcccgg ] [+] EMBL BM614314 [ ccgGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGCCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC GGCCC AAAACC GGGACG AATCGGCCATCG GGCGCATCCGCAAGCGGTTCAAC GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGG CT GCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAAACGCTCGGCACGATCGAGGTGCAGCGCGGCAATCTGGTCGAGGCGATCAAGCTGTTCGAGCGGGCGATCGAGCTGGCGCGCACGGAGATGAGCCTGGTGCATCTGTACTCGCTGAAGGATGCGGCGGTCGCGCAGGTGGACGTGGCGAAGAACATGGGCTTGAGTATTAGCAACATTTCAGCCGA] [+] EMBL BX619842 [ tTACCGGCAGGC GGCCC AAAACCGGGGACGNAATCGGCCATCGAGGCGCATCCGCAAGCGGTTCAACNNGGNATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGGCCTGGCTGC ] consensusID : consensus_8670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 415 fasta sequence [CGCCGAGTTAAACGGGACATCTTCCATCACCGCGGCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGACAGGCGGCCCAAAACCGGGACGAATCGGCCATCGGGCGCATCCGCAAGCGGTTCAACGAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGGCTGCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAA] [+] EMBL AL932305 [CGCCGAGTTAAACGGGACATCTTCCATCACCGCGGCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGACAGGCGGCCCAAAACCGGGACGAATCGGCCATCGGGCGCATCCGCAAGCGGTTCAACGAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGGCTGCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAA] [+] EMBL BM625522 [ CCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGACAGGCGGCCCAAAACCGGGACGAATCGGCCATCGGGCGCATCCGCAAGCGGTTCAACGAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCA ] consensusID : consensus_8670#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [TGGATGACCTAAATTAAATCCCGGCTCGTTTTATTCGATTGTTGCACACAACGTAATTCAAGCATAACACCGGGAGACGAAAGAAACAGAAAACAAAACTGGTGATATGGAACACATTGGGCACACACACCACATTAGGTGAGCCAATGCAATTGCATACAACCATGACTGCTTGCTATTAATGCTTCACGCTAAACGATAAATTATAAACGTATTGGGGATGGGGGGAGGGGAGTCCTCGGAATTATGTGGAATCGATTCCACCCCACAAGCGCACGCCGCGGCAGCAGCTTTCCTTACAACGCTTTAACATACAAAACCAAGGCCTGCTTCTCGTGGGTACGTACTGGTACACTGCGCTTAAAAGTTCGGCTGAATGGTGCTAATACTCAAGCCCATGTTCTTC] [+] EMBL BM633560 [TGGATGACCTAAATTAAATCCCGGCTCGTTTTATTCGATTGTTGCACACAACGTAATTCAAGCATAACACCGGGAGACGAAAGAAACAGAAAACAAAACTGGTGATATGGAACACATTGGGCACACACACCACATTAGGTGAGCCAATGCAATTGCATACAACCATGACTGCTTGCTATTAATGCTTCACGCTAAACGATAAATTATAAACGTATTGGGGATGGGGGGAGGGGAGTCCTCGGAATTATGTGGAATCGATTCCACCCCACAAGCGCACGCCGCGGCAGCAGCTTTCCTTACAACGCTTTAACATACAAAACCAAGGCCTGCTTCTCGTGGGTACGTACTGGTACACTGCGCTTAAAAGTTCGGCTGAATGGTGCTAATACTCAAGCCCATGTTCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8670#0 CCGGGAAGCGATGAAGAGCAAGAAACCGACCTACCCGTCGAAGCAGTTCCTCAAGAGCTA 60 consensus_8670#1 ------------------------------------------------------------ consensus_8670#2 ------------------------------------------------------------ consensus_8670#0 CTTCAGCTCGTTCAACAACGATCCGATCGGCAAGCTGGTCGTGGCCAGCACGGAACAGAA 120 consensus_8670#1 ------------------------------------------------------------ consensus_8670#2 ------------------------------------------------------------ consensus_8670#0 GGGTTTCATCAAGGCAAAGGCCCTGTTCGACAGCGGCGAGTACGAGGGCATTGTGGCGGC 180 consensus_8670#1 ------------------------------------------------------------ consensus_8670#2 ------------------------------------------------------------ consensus_8670#0 CTGCACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTGCT 240 consensus_8670#1 ------------------------------------------------------------ consensus_8670#2 ------------------------------------------------------------ consensus_8670#0 GCTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGA 300 consensus_8670#1 ------------------------------------------------------------ consensus_8670#2 ------------------------------------------------------------ consensus_8670#0 CGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCG 360 consensus_8670#1 ------------------------------------------------------------ consensus_8670#2 ------------------------------------------------------------ consensus_8670#0 GGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGC 420 consensus_8670#1 ------------------------------------------------------------ consensus_8670#2 ------------------------------------------------------------ consensus_8670#0 GCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCA--CCGCGGCCAGGTG 478 consensus_8670#1 ---------------CGCCGAGTTAAACGGG-ACATCTTCCATCA--CCGCGGC-AGGTG 41 consensus_8670#2 -----------------------------TGGATGACCTAAATTAAATCCCGGCTCGTTT 31 * * * * ** * * **** * * consensus_8670#0 TACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTG 538 consensus_8670#1 TACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTG 101 consensus_8670#2 TATTCGATTGTTGCACACA-ACGTAATTCAAGCATA-ACACCGGGAGA-CGAAAGAAACA 88 ** * * * * ** * * * ** * * ** ** * * consensus_8670#0 TGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGCGGCC 598 consensus_8670#1 TGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGACAGGCGGCC 161 consensus_8670#2 GAAAACAAAACTGGTGATATGG-AACACATTGGGCACACACACCACATT---AGGTGAGC 144 ** * ** ** * ** ** * ** * * * *** * * consensus_8670#0 CAAAACCGGGACGAATCGGCCATCGGGCGCAT-CCGCAAGCGGTTCA-ACGAGATACTGG 656 consensus_8670#1 CAAAACCGGGACGAATCGGCCATCGGGCGCAT-CCGCAAGCGGTTCA-ACGAGATACTGG 219 consensus_8670#2 CAATGCAATTGCATA-CAACCAT-GACTGCTTGCTATTAATGCTTCACGCTAAACGATAA 202 *** * * * * **** * ** * * * * **** * * * * consensus_8670#0 ACCAGTACGCGGACTGCGT-CGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAG 715 consensus_8670#1 ACCAGTACGCGGACTGCGT-CGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAG 278 consensus_8670#2 ATTA-TAAACGTATTGGGGATGGGGGGAGGGGAGTCCTCG---GAATTATGTGGAATCGA 258 * * ** ** * ** * * * * * ****** * ** * consensus_8670#0 CAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAAT 775 consensus_8670#1 CAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAAT 338 consensus_8670#2 TTCCACCCCACAAGCGCACGCCGCGGCAGCAGCTTTCCTTACAACGCTTTAACATACAAA 318 * * ** * ** ** * * * ** * * **** consensus_8670#0 GCGCAGATCTACGTGCACCGGGGGCTGCTGCAGCTGCAGTGGAAGGGCGACATCGACGAG 835 consensus_8670#1 GCGCAGATCTACGTGCACCGGGGGCTGCTGCAGCTGCAGTGGAAGGGCGACATCGACGAG 398 consensus_8670#2 ACCAAGGCCTGCTTCT--CGTGGGTACGTACTGGTACACTGCGCTTAAAAGTTCGGCTGA 376 * ** ** * * ** *** * * * * ** ** * *** * consensus_8670#0 GGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAA 895 consensus_8670#1 GGCGTGAAGCTGATCAA------------------------------------------- 415 consensus_8670#2 ATGGTGCTAATACTCAAGCCCATGTTCTTC------------------------------ 406 *** * **** consensus_8670#0 ACGCTCGGCACGATCGANGTGCAGCGCGGCAATCTGGTCGAGGCGATCAAGCTGTTCGAG 955 consensus_8670#1 ------------------------------------------------------------ consensus_8670#2 ------------------------------------------------------------ consensus_8670#0 CGGGCGATCGAGCTGGCGCGCACGGAGATGAGCCTGGTGCATCTGTACTCGCTGAAGGAT 1015 consensus_8670#1 ------------------------------------------------------------ consensus_8670#2 ------------------------------------------------------------ consensus_8670#0 GCGGCGGTCGCGCAGGTGGACGTGGCGAAGAACATGGGCTTGAGTATTAGCAACATTTCA 1075 consensus_8670#1 ------------------------------------------------------------ consensus_8670#2 ------------------------------------------------------------ consensus_8670#0 GCCGA 1080 consensus_8670#1 ----- consensus_8670#2 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||