Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8692 cluster # 8692       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8692#0 length = 1789 sequences # 7  
consensus_8692#1 length = 702 sequences # 1  
consensus_8692#2 length = 678 sequences # 1  
consensus_8692#3 length = 627 sequences # 2  

consensusID : consensus_8692#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1789
fasta sequence
                              [CCGCGGACGCGTGGGAAACCTGTTCTGGAGTCCAATTGTTGCATTCTGGTGCAACGCGGTCCAACAACATAAGTGTCTTAGTGCGCTGCTTTACGTACTCCACCTCACGTTTAGCGTTACAGCCTTTAAGTTACTTTCGATTACAACAACAGCAAAAAGGCAAAGGTGAATTTCTGCTCCGGTTC--GAGAGAAGAAACAAAAAACGATCACCACTCGGGAGTCGCTCGGGGTCATACACACAAGCGTCTCCGAAGGGAAAGCAGCCAACGGAATCGACAAAACGGCAAAAGTAACACTTGATGCACGTGTCCTCTTAGCAAGTACCAGGCTTCAGGGCGTACGATGAATTAGTCTGGGAATTGAACCAGTCATACTGTTGTAGCATTAGATATTCCTAACCACACAGAAGCGTGAAATTATAAGACAAAGCCACCATGTTTAAGCTGCTCGGAGGGTTAAAGCAGTACTTCAAATGGCAGGACATCCAAACGGACAACATTGTGTTCCGGTTGCACAACACCTTTACCACTGCACTGCTGCTCGCGTGCAGCCTGATCATAACCGCCACCCAGTATGTGGGCAATCCGATCAGCTGCATCGTTGGCGGCGTTCCGGCACACGTCGTGAACACGTTCTGCTGGATCTCTAGTACCTTCACCATGCCGGATGCGTTCCGTCGACAGGTTGGACGCGAAGTAGCACATCCTGGCATATCGAACGACTTCGACGATGAAGATGCGAAGAAATATTACACCTACTATCAGTGGGTCTGCTTCGTGCTGTTCTTCCAGGCGATCGCTTGCTACACTCCAAAGTTCATCTGGGACGCGGTGGAGGGCGGACTGATGCGAATGATCGTGATGGGGCTGAACCGGGGCGCGTGCAAGGAGCAGGAAAAGTGTGCCAAAAAGCAGATCCTCCTCGACTACCTGCTAACTCACCTGAAGCGCCACAAGATCTACGCCCTGCGCTACTGGATCTGCGAAGGGCTCTGCTTCGTCAACATTGTCGTGCAGCTGTGGCTGATGAATCGGTTCTTCAACGGTGAGTTCATCTCGTACGGCTGGGACGTGCTGAACTACTCGGACCAGCCCCAGGAGCAGCGGGCCGATCCGATGGTGTATGTCTTCCCGCGCGTCACCAAGTGTAACTTCTACAAGTATGGTGCGTCTGGATCGATTCAAAAGCACGACGCCATGTGCATACTGCCGCTGAACATCGTCAACGAGAAGACGTACATCTTCATCTGGTTTTGGTTCATCATTTTGGCCTGCTTTTTGGCCGGATTGATTGTGTACCGAGCTGTCATCATCTTTGTGCCTTCGGTGCGATCACAACTGCTGAACGCGCGTAACCGTATGGTGCCTCGGAACGTTGCGAAAACGATCTCCACCAGCCTGGATCTGGGCGATTGGTGGATCGTGTACATGCTAGCACGAAATCTGGACCCAATCATCTTCAAGGACGTAGCGACAGAGCTTGCGAAACGTATCGAGCTGAACGATGCGGACGAAAACGATCAGAACGAGAAGAAGCGTATGCACTAAATTGGAATTCAGAGAAAGAGCACCGCTCACGTACGCTAGCGACACTCGCACAGTCTATATAGTAGCAACACAAAAGAAAGCATTACGAACTATGCATACATGTAGAGCTGCAGCCGNTAGGAGCGATGCTATTGTGTACACCCGTGAAATCTCTCTTTTAATCTCAAAACACCTTCATTCCACGACGTGTGAAGTANGGTTCCTATACTCTGTGCCACAACAANGATCGAATTTCCACGTTT]

[+] EMBL BM600628             [CCGCGGACGCGTGGGAAACCTGTTCTGGAGTCCAATTGTTGCATTCTGGTGCAACGCGGTCCAACAACATAAGTGTCTTAGTGCGCTGCTTTACGTACTCCACCTCACGTTTAGCGTTACAGCCTTTAAGTTACTTTCGATTACAACAACAGCAAAAAGGCAAAGGTGAATTTCTGCTCCGGTTC  GAGAGAAGAAACAAAAAACGATCACCACTCGGGAGTCGCTCGGGGTCATACACACAAGCGTCTCCGAAGGGAAAGCAGCCAACGGAATCGACAAAACGGCAAAAGTAACACTTGATGCACGTGTCCTCTTAGCAAGTACCAGGCTTCAGGGCGTACGATGAATTAATCTGGGAACTGGACGAGCCATACTGTTGCTGCATTAGATATTCCTAACCACACAGAAGCGTGAAATTATAAGACAAAGCCACCATGTTTAAGCTGCTCGGAGGGTTAAAGCAGTACTTCAAATGGCAGGACATCCAGACGGACAACATTGTGTTCCGGTTGCACAACACCTTCACCACCGCGCTGCTGCTCGCGTGCAGTCTGATCATTACCGCCACCCAGTATGTGGGCAATCCGATCAGCTGCATCGTTGGCGGCGTTCCGGCACACGTCGTGAACACGTTCTGCTGGATCTCTAGTACCTTCACCATGCCGGATGCGTTCCGTCGACAGGTTGGACGCGAAGTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM639002             [                                                                                                                                                            ccGGCAAAGGTGAATTTCTGCTCCGGTTCGAGAGAGAAGAAAC  AAAACGATCACCACTCGGGAGTCGCTCGGGGTCATACACACAAGCGTCTCCGAAGGGAAAGCAGCCAACGGAATCGACAAAACGGCAAAAGTAACACTTGATGCACGTGTCCTCTTAGCAAGTACCAGGCTTCAGGGCGTACGATGAATTAGTCTGGGAATTGAACCAGTCATACTGTTGTAGCATTAGATATTCCTAACCACACAGAAGCGTGAAATTATAAGACAAAGCCACCATGTTTAAGCTGCTCGGAGGGTTAAAGCAGTACTTCAAATGGCAGGACATCCAAACGGACAACATTGTGTTCCGGTTGCACAACACCTTTACCACTGCACTGCTGCTCGCGTGCAGCCTGATCATAACCGCCACCCAGTATGTGGGCAATCCGATCAGCTGCATCGTTGGCGGCGTTCCGGCACACGTCGTGAACACGTTCTGCTGGATCTCTAGTACCTTCACCATGCCGGATGCGTTCCGTCGACAGGTTGGACGCGAAGTAGCACATCCTGGCATATCGAACGACTTCGACGATGAAGATGCGAAGAAATATTACACCTACTATCAGTGGGTCTGCTTCGTGCTGTTCTTCCAGGCGATCGCTTGCTACACTCCAAAGTTCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX620980             [                                                                                                                                                                                                                                                                                                                                               GGGCGTACGATGAATTAGTCTGGGAATTGAACCAGTCATACTGTTGTAGCNTTAGATATTCCTAACCACACAGAAGCGTGAAATTATAAGACAAAGCCACCATGTTTAAGCTGCTCGGAGGGTTAAAGCAGTACTTCAAATGGCAGGACATCCAAACGGACAACATTGTGTTCCGGTTGCACAACACCTTTACCACTGCACTGCTGCTCGCGTGCAGCCTGATCATAACCGCCACCCAGTATGTGGGCAATCCGATCAGCTGCATCGTTGGCGGCGTTCCGGCACACGTCGTGAACACGTTCTGCTGGATCTCTAGTACCTTCACCATGCCGGATGCGTTCCGTCGACAGGTTGGACGCGAAGTAGCACATCCTGGCATATCGAACGACTTCGACGATGAAGATGCGAAGAAATATTACACCTACTATCAGTGGGTCTGCTTCGTGCTGTTCTTCCAGGCGATCGCTTGCTACACTCCAAAGTTCATCTGGGACGCGGTGGAGGGCGGACTGATGCGAATGATCGTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX626237             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGGGCAATCCGATCAGCTGCATCGTTGGCGGCGTTCCGGCACACGTCGTGAACACGTTCTGCTGGATCTCTAGTACCTTCACCATGCCGGATGCGTTCCGTCGACAGGTTGGACGCGAAGTAGCACATCCTGGCATATCGAACGACTTCGACGATGAAGATGCGAAGAAATATTACACCTACTATCAGTGGGTCTGCTTCGTGCTGTTCTTCCAGGCGATCGCTTGCTACACTCCAAAGTTCATCTGGGACGCGGTGGAGGGCGGACTGATGCGAATGATCGTGATGGGGCTGAACCGGGGCGCGTGCAAGGAGCAGGAAAAGTGTGCCAAAAAGCAGATCCTCCTCGACTACCTGCTAACTCACCTGAAGCGCCACAAGATCTACGCCCTGCGCTACTGGATCTGCGAAGGGCTCTGCTTCGTCAACATTGTCGTGCAGCTGTGGCTGATGAATCGGTTCTTCAACGGTGAGTTCATCTCGTACGGCTGGGACGTGCTGAACTACTCGGACCAGCCCCAGGAGCAGCGGGCCGATCCGATGGTGTATGTCTTCCCGCGCGTCACCAAGTGTAACTTCTACAAGTATGGTGCGTCTGGATCGATTCAAAAGCACGACGCCATGTGCATACTGCCGCTGAACATCGTCAACGAGAAGACGTACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM592809             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CTCGACTACCTGCTAACTCACCTGAAGCGCCACAAGATCTACGCCCTGCGCTACTGGATCTGCGAAGGGCTCTGCTTCGTCAACATTGTCGTGCAGCTGTGGCTGATGAATCGGTTCTTCAACGGTGAGTTCATCTCGTACGGCTGGGACGTGCTGAACTACTCGGACCAGCCCCAGGAGCAGCGGGCCGATCCGATGGTGTATGTCTTCCCGCGCGTCACCAAGTGTAACTTCTACAAGTATGGTGCGTCTGGATCGATTCAAAAGCACGACGCCATGTGCATACTGCCGCTGAACATCGTCAACGAGAAGACGTACATCTTCATCTGGTTTTGGTTCATCATTTTGGCCTGCTTTTTGGCCGGATTGATTGTGTACCGAGCTGTCATCATCTTTGTGCCTTCGGTGCGATCACAACTGCTGAACGCGCGTAACCGTATGGTGCCTCGGAACGTTGCGAAAACGATCTCCACCAGCCTGGATCTGGGCGATTGGTGGATCGTGTACATGCTAGCACGAAATCTGGACCCAATCATCTTCAAGGACGTAGCGACAGAGCTTGCGAAACGTATCGAGCTGAACGATGCGGACGAAAACGATCAGAACGAGAAGAAGCGTATGCACTAAATTGGAATTCAGAGAAAGAGCACCGCTCACGTACGCTAGCG                                                                                                                                                                                                         ]
[+] EMBL BM622499             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccgGTACAGCTGTGGCTGATGAACCGTTTCTTCAACGGCGAGTTCCTCTCGTACGGTTGGGACGTGCTGAACTACTCGGACCAGCCCCAGGAGCAGCGGGCCGATCCGATGGTGTATGTCTTCCCGCGCGTCACCAAGTGTAACTTCTACAAGTATGGTGCGTCTGGATCGATTCAAAAGCACGACGCCATGTGCATACTGCCGCTGAACATCGTCAACGAGAAGACGTACATCTTCATCTGGTTTTGGTTCATCATTTTGGCCTGCTTTTTGGCCGGATTGATTGTGTACCGAGCTGTCATCATCTTTGTGCCTTCGGTGCGATCACAACTGCTGAACGCGCGTAACCGTATGGTGCCTCGGAACGTTGCGAAAACGATCTCCACCAGCCTGGATCTGGGCGATTGGTGGATCGTATACATGCTAGCACGAAATCTGGACCCAATCATCTTCAAGGACGTAGCGACAGAGCTGGCGAAACGTATCGAGCTGAACGATGCGGACGAAAACGATCAGAACGAGAAGAAGCGTATGCACTAATCCGGAATTCAGAGAAAGAGCACCGCTCACGTACGCTAGCAACACTCGCACAGTCTATATAGTAGCAACACAAAAGAAAGCATTACGAACTATGCATACATGTA                                                                                                                                          ]
[+] EMBL BX627532             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CATCTCGTACGGCTGGGACGTGCTGAACTACTCGGACCAGCCCCAGGAGCAGCGGGCCGATCCGATGGTGTATGTCTTCCCGCGCGTCACCAAGTGTAACTTCTACAAGTATGGTGCGTCTGGATCGATTCAAAAGCACGACGCCATGTGCATACTGCCGCTGAACATCGTCAACGAGAAGACGTACATCTTCATCTGGTTTTGGTTCATCATTTTGGCCTGCTTTTTGGCCGGATTGATTGTGTACCGAGCTGTCATCATCTTTGTGCCTTCGGTGCGATCACAACTGCTGAACGCGCGTAACCGTATGGTGCCTCGGAACGTTGCGAAAACGATCTCCACCAGCCTGGATCTGGGCGATTGGTGGATCGTGTACATGCTAGCACGAAATCTGGACCCAATCATCTTCAAGGACGTANCGACAGAGCTTGCGAAACGTATCGAGCTGAACGATGCGGACGAAAACNATCAGAACGAGAAGAAGCGTATGCACTAAATTGGAATTCAGAGAAAGATCACCGCTCTCGTACGCTAGCGACACTCGCACAGTCTATATAGTAGCAACACANAAGAAAGCATTACGAACTATGCATACATGTAGAGCTGCAGCCGNTAGGAGCGATGCTATTGTGTACACCCGTGAAATCTCTCTTTTAATCTCAAAACACCTTCATTCCACGACGTGTGAAGTANGGTTCCTATACTCTGTGCCACAACAANGATCGAATTTCCACGTTT]


>consensus_8692#0 CCGCGGACGCGTGGGAAACCTGTTCTGGAGTCCAATTGTTGCATTCTGGTGCAACGCGGT CCAACAACATAAGTGTCTTAGTGCGCTGCTTTACGTACTCCACCTCACGTTTAGCGTTAC AGCCTTTAAGTTACTTTCGATTACAACAACAGCAAAAAGGCAAAGGTGAATTTCTGCTCC GGTTCGAGAGAAGAAACAAAAAACGATCACCACTCGGGAGTCGCTCGGGGTCATACACAC AAGCGTCTCCGAAGGGAAAGCAGCCAACGGAATCGACAAAACGGCAAAAGTAACACTTGA TGCACGTGTCCTCTTAGCAAGTACCAGGCTTCAGGGCGTACGATGAATTAGTCTGGGAAT TGAACCAGTCATACTGTTGTAGCATTAGATATTCCTAACCACACAGAAGCGTGAAATTAT AAGACAAAGCCACCATGTTTAAGCTGCTCGGAGGGTTAAAGCAGTACTTCAAATGGCAGG ACATCCAAACGGACAACATTGTGTTCCGGTTGCACAACACCTTTACCACTGCACTGCTGC TCGCGTGCAGCCTGATCATAACCGCCACCCAGTATGTGGGCAATCCGATCAGCTGCATCG TTGGCGGCGTTCCGGCACACGTCGTGAACACGTTCTGCTGGATCTCTAGTACCTTCACCA TGCCGGATGCGTTCCGTCGACAGGTTGGACGCGAAGTAGCACATCCTGGCATATCGAACG ACTTCGACGATGAAGATGCGAAGAAATATTACACCTACTATCAGTGGGTCTGCTTCGTGC TGTTCTTCCAGGCGATCGCTTGCTACACTCCAAAGTTCATCTGGGACGCGGTGGAGGGCG GACTGATGCGAATGATCGTGATGGGGCTGAACCGGGGCGCGTGCAAGGAGCAGGAAAAGT GTGCCAAAAAGCAGATCCTCCTCGACTACCTGCTAACTCACCTGAAGCGCCACAAGATCT ACGCCCTGCGCTACTGGATCTGCGAAGGGCTCTGCTTCGTCAACATTGTCGTGCAGCTGT GGCTGATGAATCGGTTCTTCAACGGTGAGTTCATCTCGTACGGCTGGGACGTGCTGAACT ACTCGGACCAGCCCCAGGAGCAGCGGGCCGATCCGATGGTGTATGTCTTCCCGCGCGTCA CCAAGTGTAACTTCTACAAGTATGGTGCGTCTGGATCGATTCAAAAGCACGACGCCATGT GCATACTGCCGCTGAACATCGTCAACGAGAAGACGTACATCTTCATCTGGTTTTGGTTCA TCATTTTGGCCTGCTTTTTGGCCGGATTGATTGTGTACCGAGCTGTCATCATCTTTGTGC CTTCGGTGCGATCACAACTGCTGAACGCGCGTAACCGTATGGTGCCTCGGAACGTTGCGA AAACGATCTCCACCAGCCTGGATCTGGGCGATTGGTGGATCGTGTACATGCTAGCACGAA ATCTGGACCCAATCATCTTCAAGGACGTAGCGACAGAGCTTGCGAAACGTATCGAGCTGA ACGATGCGGACGAAAACGATCAGAACGAGAAGAAGCGTATGCACTAAATTGGAATTCAGA GAAAGAGCACCGCTCACGTACGCTAGCGACACTCGCACAGTCTATATAGTAGCAACACAA AAGAAAGCATTACGAACTATGCATACATGTAGAGCTGCAGCCGNTAGGAGCGATGCTATT GTGTACACCCGTGAAATCTCTCTTTTAATCTCAAAACACCTTCATTCCACGACGTGTGAA GTANGGTTCCTATACTCTGTGCCACAACAANGATCGAATTTCCACGTTT



consensusID : consensus_8692#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGCTTAGCAAGAGCAAAAAAATCGTTGCAATTATTGCATTCTTTCTTAGGAGGAATAAATAGTTACTGCAGGTTCAAAATCGATGCCGATGCCGACGACCTCTGTCTAAACAAAACCTTAGGGAGACGGGGGAAGAGCGAGAGAAAGAGAGAGCGACCCACCACCCGGCGGGGAGGTTGTGCCCGGTGTGAATGGGGGAAAAAAACGAGACAAGAGCAAACTCTAAGGTACAACCAACATGCAAACACAAAGGACACTCCACACAAACACACACCCACACAATCGCTCCTTCGTGTTCTCACGGAAGACTTTTGTGTGCGTGTGTGTGTGTGTACGTGTGTGTCTGAAAGCCTGAAGGATCTCGGAACAACGATAATGACCGCTTGAAAGGCAGTCACCAGGGAAAGCGTGTTCAGCACTCTCCAGGATGGCGAGGGGGCGGCGAGCTAGGAGATGGCAATGTGTGTGTGTGTGTGTCTCCTTGACTCGCAACCCCTTTCATAGTCCTTTTTGTAGACCACATTTACCATCACGACAAAGAGCCCCCCCGTTGTAACCCCACTTTTTAGCATACGATCGCGACGCAGCCTGTTTCCCACACACAAGAAAACCCTCCATTCCGCCCTTGCCGCCAACAACGAGGCAGGTGATACCTTTCCGTGCTCCCCACAGCCGCC]

[+] EMBL BM623680             [CCGCCCACGCGTCCGCCCACGCGTCCGCTTAGCAAGAGCAAAAAAATCGTTGCAATTATTGCATTCTTTCTTAGGAGGAATAAATAGTTACTGCAGGTTCAAAATCGATGCCGATGCCGACGACCTCTGTCTAAACAAAACCTTAGGGAGACGGGGGAAGAGCGAGAGAAAGAGAGAGCGACCCACCACCCGGCGGGGAGGTTGTGCCCGGTGTGAATGGGGGAAAAAAACGAGACAAGAGCAAACTCTAAGGTACAACCAACATGCAAACACAAAGGACACTCCACACAAACACACACCCACACAATCGCTCCTTCGTGTTCTCACGGAAGACTTTTGTGTGCGTGTGTGTGTGTGTACGTGTGTGTCTGAAAGCCTGAAGGATCTCGGAACAACGATAATGACCGCTTGAAAGGCAGTCACCAGGGAAAGCGTGTTCAGCACTCTCCAGGATGGCGAGGGGGCGGCGAGCTAGGAGATGGCAATGTGTGTGTGTGTGTGTCTCCTTGACTCGCAACCCCTTTCATAGTCCTTTTTGTAGACCACATTTACCATCACGACAAAGAGCCCCCCCGTTGTAACCCCACTTTTTAGCATACGATCGCGACGCAGCCTGTTTCCCACACACAAGAAAACCCTCCATTCCGCCCTTGCCGCCAACAACGAGGCAGGTGATACCTTTCCGTGCTCCCCACAGCCGCC]


>consensus_8692#1 CCGCCCACGCGTCCGCCCACGCGTCCGCTTAGCAAGAGCAAAAAAATCGTTGCAATTATT GCATTCTTTCTTAGGAGGAATAAATAGTTACTGCAGGTTCAAAATCGATGCCGATGCCGA CGACCTCTGTCTAAACAAAACCTTAGGGAGACGGGGGAAGAGCGAGAGAAAGAGAGAGCG ACCCACCACCCGGCGGGGAGGTTGTGCCCGGTGTGAATGGGGGAAAAAAACGAGACAAGA GCAAACTCTAAGGTACAACCAACATGCAAACACAAAGGACACTCCACACAAACACACACC CACACAATCGCTCCTTCGTGTTCTCACGGAAGACTTTTGTGTGCGTGTGTGTGTGTGTAC GTGTGTGTCTGAAAGCCTGAAGGATCTCGGAACAACGATAATGACCGCTTGAAAGGCAGT CACCAGGGAAAGCGTGTTCAGCACTCTCCAGGATGGCGAGGGGGCGGCGAGCTAGGAGAT GGCAATGTGTGTGTGTGTGTGTCTCCTTGACTCGCAACCCCTTTCATAGTCCTTTTTGTA GACCACATTTACCATCACGACAAAGAGCCCCCCCGTTGTAACCCCACTTTTTAGCATACG ATCGCGACGCAGCCTGTTTCCCACACACAAGAAAACCCTCCATTCCGCCCTTGCCGCCAA CAACGAGGCAGGTGATACCTTTCCGTGCTCCCCACAGCCGCC



consensusID : consensus_8692#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence
                              [CCGCCCACGCGTCCGCGGTTTCCGACTTGTCCTTCGATTTCCAAACAGGTGAAAAATCTCGCTGCTAAGAAGAATGGCCGCAAAGTACCGCATTGTGATGGTTCGCCACGGCGAATCGGAGTGGAACCAGAAGAATCTGTTCTGCGGCTGGTTCGATGCTAACCTGAGCGACAAGGGTAAGGAGGAAGCCCTGGCCGCCGGAAAGGCCGTGAAGGAGGCGGGCCTGAAGTTCGACATTGCCCACACGTCGCTGCTCACCCGTGCCCAGGTCACGCTGGACTCGATCCTGAAGGAGTCGGGCCAAACGAGCATCCCGATCCAGAAGACCTGGCGCCTGAACGAGCGCCACTACGGTGGCCTGACCGGGCTGAACAAGTCCGAAACGGCGGCCAAGTACGGCGAGGAGCAGGTGCTGATCTGGCGCCGCAGCTTCGATGTTCCCCCGCCCAATATGGAACCGGACCATGCCTACTACGATGCGATCGTCAAGGACGAGCGGTACAAGGACGACCCGAAACCGAACGAGTTCCCGATGGCTGAATCGCTGAAGCTGACGATCGCCCGCACCCTGCCGTACTGGAACGACGTTATCATTCCGCAGCTGAAGGAGGGCAAGAACATTATCATTGCCGCGCACGGCAACAGCCTGCGCGGTATCGTGAAGCATCTGGACCAGAT]

[+] EMBL BM631887             [CCGCCCACGCGTCCGCGGTTTCCGACTTGTCCTTCGATTTCCAAACAGGTGAAAAATCTCGCTGCTAAGAAGAATGGCCGCAAAGTACCGCATTGTGATGGTTCGCCACGGCGAATCGGAGTGGAACCAGAAGAATCTGTTCTGCGGCTGGTTCGATGCTAACCTGAGCGACAAGGGTAAGGAGGAAGCCCTGGCCGCCGGAAAGGCCGTGAAGGAGGCGGGCCTGAAGTTCGACATTGCCCACACGTCGCTGCTCACCCGTGCCCAGGTCACGCTGGACTCGATCCTGAAGGAGTCGGGCCAAACGAGCATCCCGATCCAGAAGACCTGGCGCCTGAACGAGCGCCACTACGGTGGCCTGACCGGGCTGAACAAGTCCGAAACGGCGGCCAAGTACGGCGAGGAGCAGGTGCTGATCTGGCGCCGCAGCTTCGATGTTCCCCCGCCCAATATGGAACCGGACCATGCCTACTACGATGCGATCGTCAAGGACGAGCGGTACAAGGACGACCCGAAACCGAACGAGTTCCCGATGGCTGAATCGCTGAAGCTGACGATCGCCCGCACCCTGCCGTACTGGAACGACGTTATCATTCCGCAGCTGAAGGAGGGCAAGAACATTATCATTGCCGCGCACGGCAACAGCCTGCGCGGTATCGTGAAGCATCTGGACCAGAT]


>consensus_8692#2 CCGCCCACGCGTCCGCGGTTTCCGACTTGTCCTTCGATTTCCAAACAGGTGAAAAATCTC GCTGCTAAGAAGAATGGCCGCAAAGTACCGCATTGTGATGGTTCGCCACGGCGAATCGGA GTGGAACCAGAAGAATCTGTTCTGCGGCTGGTTCGATGCTAACCTGAGCGACAAGGGTAA GGAGGAAGCCCTGGCCGCCGGAAAGGCCGTGAAGGAGGCGGGCCTGAAGTTCGACATTGC CCACACGTCGCTGCTCACCCGTGCCCAGGTCACGCTGGACTCGATCCTGAAGGAGTCGGG CCAAACGAGCATCCCGATCCAGAAGACCTGGCGCCTGAACGAGCGCCACTACGGTGGCCT GACCGGGCTGAACAAGTCCGAAACGGCGGCCAAGTACGGCGAGGAGCAGGTGCTGATCTG GCGCCGCAGCTTCGATGTTCCCCCGCCCAATATGGAACCGGACCATGCCTACTACGATGC GATCGTCAAGGACGAGCGGTACAAGGACGACCCGAAACCGAACGAGTTCCCGATGGCTGA ATCGCTGAAGCTGACGATCGCCCGCACCCTGCCGTACTGGAACGACGTTATCATTCCGCA GCTGAAGGAGGGCAAGAACATTATCATTGCCGCGCACGGCAACAGCCTGCGCGGTATCGT GAAGCATCTGGACCAGAT



consensusID : consensus_8692#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 627
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGGTCGGAACGAAGCGGATCTTGGAGCGCAGCAGTGCAGCAGTCGCGCTTACCCCGTGTGTGTGTGTGCGCGCTTGTGGTTGACGCTATGTTTTGAAGGTTTTTTTGTTGTTGTGTTGCTTCGTTTTTCGTTTTGATTATATTTATTTACCTCTAACACTCCCAGTTCGAGCCCGCGTGTTTGCGTTCTCCGTTTCGGTATATTTCGATCGATTGTGTGATAAGCCATTCAACCAACCAGTTTCAGTGCTGCAGAGTAATTGTGTGTATTTTGTTGATTTTGTTTTTAAATTCTCAACAAACCGATGCAAAGTTAACACAAAAGTGTACAAATGTGATAAACCTGTTCTGGAGTCCAATTGTTGCATTCTGGTGCAACGCGGTCCAACAACATAAGTGTCTTAGTGCGCTGCTTTACGTACTCCACCTCACGTTTAGCGTTACAGCCTTTAAGTTACTTTCGATTACAACAACACCAAAAAGGCAAAGGTGAATTTCTGCTCCGGTTCGAGAGAAGAAACAAAAAACGATCACCACCACGGGAGTCGCTCGGGGTCATACACACAAGCGTCTCCGAAGGGAAAGCAGCCAACGGAATCGACA]

[+] EMBL BM580754             [CCGCGGACGCGTGGGCGGACGCGTGGGGTCGGAACGAAGCGGATCTTGGAGCGCAGCAGTGCAGCAGTCGCGCTTACCCCGTGTGTGTGTGTGCGCGCTTGTGGTTGACGCTATGTTTTGAAGGTTTTTTTGTTGTTGTGTTGCTTCGTTTTTCGTTTTGATTATATTTATTTACCTCTAACACTCCCAGTTCGAGCCCGCGTGTTTGCGTTCTCCGTTTCGGTATATTTCGATCGATTGTGTGATAAGCCATTCAACCAACCAGTTTCAGTGCTGCAGAGTAATTGTGTGTATTTTGTTGATTTTGTTTTTAAATTCTCAACAAACCGATGCAAAGTTAACACAAAAGTGTACAAATGTGATAAACCTGTTCTGGAGTCCAATTGTTGCATTCTGGTGCAACGCGGTCCAACAACATAAGTGTCTTAGTGCGCTGCTTTACGTACTCCACCTCACGTTTAGCGTTACAGCCTTTAAGTTACTTTCGATTACAACAACACCAAAAAGGC                                                                                                                      ]
[+] EMBL BM578650             [                                                                                         ccgGCGCGCTTGTGGTTGACGCTATGTTTTGAAGGTTTTTTTGTTGGTGTGTTGCTTCGTTTTTCGTTTTGATTATATTTATTTACCTCTAACACTCCCAGTTCGAGCCCGCGTGTTTGCGTTCTCCGTTTCGGTATATTTCGATCGATTGTGTGATAAGCCATTCAACCAACCAGTTTCAGTGCTGCAGAGTAATTGTGTGTATTTTGGTGATTTTGTTTTTAAATTCTCAACAAACCGATGCAAAGTTAACACAAAAGTGTACAAATGTGATAAACCTGGTCTGGAGTCCAATTGTTGCATTCTGGGGCAACGCGGGCCAACAACATAAGTGTCTTAGTGCGCTGCTTTACGTACTCCACCTCACGTTTAGCGTTACAGCCTTTAAGTTACTTTCGATTACAACAACACCAAAAAGGCAAAGGTGAATTTCTGCTCCGGTTCGAGAGAAGAAACAAAAAACGATCACCACCACGGGAGTCGCTCGGGGTCATACACACAAGCGTCTCCGAAGGGAAAGCAGCCAACGGAATCGACA]


>consensus_8692#3 CCGCGGACGCGTGGGCGGACGCGTGGGGTCGGAACGAAGCGGATCTTGGAGCGCAGCAGT GCAGCAGTCGCGCTTACCCCGTGTGTGTGTGTGCGCGCTTGTGGTTGACGCTATGTTTTG AAGGTTTTTTTGTTGTTGTGTTGCTTCGTTTTTCGTTTTGATTATATTTATTTACCTCTA ACACTCCCAGTTCGAGCCCGCGTGTTTGCGTTCTCCGTTTCGGTATATTTCGATCGATTG TGTGATAAGCCATTCAACCAACCAGTTTCAGTGCTGCAGAGTAATTGTGTGTATTTTGTT GATTTTGTTTTTAAATTCTCAACAAACCGATGCAAAGTTAACACAAAAGTGTACAAATGT GATAAACCTGTTCTGGAGTCCAATTGTTGCATTCTGGTGCAACGCGGTCCAACAACATAA GTGTCTTAGTGCGCTGCTTTACGTACTCCACCTCACGTTTAGCGTTACAGCCTTTAAGTT ACTTTCGATTACAACAACACCAAAAAGGCAAAGGTGAATTTCTGCTCCGGTTCGAGAGAA GAAACAAAAAACGATCACCACCACGGGAGTCGCTCGGGGTCATACACACAAGCGTCTCCG AAGGGAAAGCAGCCAACGGAATCGACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8692#0      CCGCGGACGCGTGGGAAACCTGTTCTGGAGTCCAATTGTTGCATTCTGGTGCAACGCGGT 60
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      CCAACAACATAAGTGTCTTAGTGCGCTGCTTTACGTACTCCACCTCACGTTTAGCGTTAC 120
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      AGCCTTTAAGTTACTTTCGATTACAACAACAGCAAAAAGGCAAAGGTGAATTTCTGCTCC 180
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      GGTTCGAGAGAAGAAACAAAAAACGATCACCACTCGGGAGTCGCTCGGGGTCATACACAC 240
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      AAGCGTCTCCGAAGGGAAAGCAGCCAACGGAATCGACAAAACGGCAAAAGTAACACTTGA 300
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      TGCACGTGTCCTCTTAGCAAGTACCAGGCTTCAGGGCGTACGATGAATTAGTCTGGGAAT 360
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      TGAACCAGTCATACTGTTGTAGCATTAGATATTCCTAACCACACAGAAGCGTGAAATTAT 420
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      AAGACAAAGCCACCATGTTTAAGCTGCTCGGAGGGTTAAAGCAGTACTTCAAATGGCAGG 480
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      ACATCCAAACGGACAACATTGTGTTCCGGTTGCACAACACCTTTACCACTGCACTGCTGC 540
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      TCGCGTGCAGCCTGATCATAACCGCCACCCAGTATGTGGGCAATCCGATCAGCTGCATCG 600
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      TTGGCGGCGTTCCGGCACACGTCGTGAACACGTTCTGCTGGATCTCTAGTACCTTCACCA 660
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      TGCCGGATGCGTTCCGTCGACAGGTTGGACGCGAAGTAGCACATCCTGGCATATCGAACG 720
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      ACTTCGACGATGAAGATGCGAAGAAATATTACACCTACTATCAGTGGGTCTGCTTCGTGC 780
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      TGTTCTTCCAGGCGATCGCTTGCTACACTCCAAAGTTCATCTGGGACGCGGTGGAGGGCG 840
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      GACTGATGCGAATGATCGTGATGGGGCTGAACCGGGGCGCGTGCAAGGAGCAGGAAAAGT 900
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      GTGCCAAAAAGCAGATCCTCCTCGACTACCTGCTAACTCACCTGAAGCGCCACAAGATCT 960
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ---------------------------------------------------------CCG 3
                                                                                  

consensus_8692#0      ACGCCCTGCGCTACTGGATCTGCGAAGGGCTCTGCTTCGTCAACATTGTCGTGCAGCTGT 1020
consensus_8692#3      ----------------------------------CCGCGGACGCGTGGGCGGACGCGTGG 26
consensus_8692#2      ----------------------------CCGCCCACGCGTCCGCGGTTTCCGACTTGTCC 32
consensus_8692#1      CCCACGCGTCCGCCCACGCGTCCGCTTAGCAAGAGCAAAAAAATCGTTGCAATTATTGCA 63
                                                                       *          

consensus_8692#0      GGCTG--ATGAATCGGTTCTTCAACGGT-G--AGTTCATCTCGTACGGCTGGGACGTGCT 1075
consensus_8692#3      GGTCGGAACGAAGCGGATCTTGGAGCGC-AGCAGTGCAGCAGTCGCGCTTACCCCGTGTG 85
consensus_8692#2      TTCGATTTCCAAACAGGTGAAAAATCTC-GCTGCT--AAGAAGAATGGCCGCAAAGTACC 89
consensus_8692#1      TTCTTTCTTAGGAGGAATAAATAGTTACTGCAGGTTCAAAATCGATGCCGATGCCGACGA 123
                                       *                *  *        *        *    

consensus_8692#0      GAACTACTCGGACCAGCCCCAGGAGCAGCGGGCCGATCCGATGGTGTATGTCTTCCCGCG 1135
consensus_8692#3      TGTGTGTGCGCGCTTGT-----GGTTGACGCTATGTTTTGAAGGTTTTTTTGTTGTTGTG 140
consensus_8692#2      GCATTGTGATGGTTCGCCAC-GGCGAATCGGAGTGGAACCA-GAAGAATCTGTTCTGCGG 147
consensus_8692#1      CCTCTGTCTAAACAAAACCTTAGGGAGACGGGGGAAGAGCGAGAGAAAGAGAGAGCGACC 183
                          *                 *     **            *                 

consensus_8692#0      CGTCACCAAGTGTAACTTCTACAAGTATGGTGCGTCTGGATCGATTCAAAAGCACGACGC 1195
consensus_8692#3      TTGCTTCGTTTTTCGTTTTGATTATATTTATTTACCTCTAACACTCCC--AGTTCGAGCC 198
consensus_8692#2      CTGGTTCGATGCTAACCTGAGCGACAAGGGTAAGGAGGAAGCCCTGGCCGCCGGAAAGGC 207
consensus_8692#1      CACCACCCGGCGGGGAGGTTGTGCCCGGTGTGAATGGGGGAAAAAAACGAGACAAGAGCA 243
                            *                       *                         *   

consensus_8692#0      CATGTGCATACTGCCGCTGAACATCGTCAACGAGAAGACGTACATCTTCATCTGGTTTTG 1255
consensus_8692#3      CGCGTGTTTGCGTTCTCCGTTTCGGTATATTTCGATCGATTGTGTGATAAGCCA--TTCA 256
consensus_8692#2      CGTGAAGGAGGCGGGCCTGAAGTTCGACATTGCCCACACGTCGCTGCTCACCCGTGCCCA 267
consensus_8692#1      AACTCTAAGGTACAACCAACATGCAAACACAAAGGACAC-TCCACACAAACACACACCCA 302
                                      *           *           *        *          

consensus_8692#0      GTTCATCATTTTGGCCTGCTTTTTGGCCGGATTGATTGTGTACCGAGCTGTCATCATCTT 1315
consensus_8692#3      ACCAACCAGTTT---CAGTGCTGCAGAGTAATTG--TGTGTATTTTGTTGATTTTGTTTT 311
consensus_8692#2      G---GTCACGCTGGACTCGATCCTGAAGGAGTCG--GGCCAAACGAGC--ATCCCGATCC 320
consensus_8692#1      CACAATCGCTCCTTCGTGTTCTCACGGAAGACTT-TTGTGTGCGTGTGTGTGTGTGTACG 361
                            *                              *                      

consensus_8692#0      TGTGCCTTCGGTG---CGAT-CACAACTGCTGAACGCGCGTAACCGTATGGTGCCTCGGA 1371
consensus_8692#3      TAAATTCTCAACAAACCGATGCAAAGTTAACACAAAAGTGTACAAATGTGATAAACC--- 368
consensus_8692#2      AGAAGACCTGGCG---------------CCTGAACGAGCGCCAC--TACGGTGGCCTG-- 361
consensus_8692#1      TGTGTGTCTGAAAGCCTGAAGGATCTCGGAACAACGATAATGACCGCTTGAAAGGCAGT- 420
                                                       *               *          

consensus_8692#0      ACGTTGCGAAAACGATCTCCACCAGCCTGGATCTGGGCGATTGGTGGATCGTGTACATGC 1431
consensus_8692#3      -TGTTCTGGAGTCCAATTGTTGCATTCTGGTGCAACGCGGTCCA-ACAACATAAGTGTCT 426
consensus_8692#2      --ACCGGGCTGAACAAGTCCGAAACGGCGGCCAAGTACGGCGAGGAGCAGGTGCTGATCT 419
consensus_8692#1      -CACCAGGGAAAGCGTGTTCAGCACTCT---CCAGGATGGCGAGGGGGCGGCGAGC-TAG 475
                             *         *     *              *                  *  

consensus_8692#0      TAGCACGAAATCTGGACCCAATCATCTTCAAGGACGTAGCGA--CAGAGCTTGCGAAACG 1489
consensus_8692#3      TAGTGCGCTG-CTTTACGTACTCCACCTCACG--TTTAGCGT--TACAGCCTTTAAGTTA 481
consensus_8692#2      GGCGCCGCAGCTTCGATGTTCCCCCGCCCAATATGGAACCGGACCATGCCTACTACGATG 479
consensus_8692#1      GAGATGGCAATGTGTGTGTGTGTGTGTCTCCTTGACTCGCAACCCCTTTCATAGTCCTTT 535
                            *     *                          *         *          

consensus_8692#0      -TATCGAGCTGAACGATGCGGACGAAAACGATCAGAACGAGAAGAAGCGTATGCACTA-A 1547
consensus_8692#3      CTTTCGATTACAACAACAC---CAAAAA-------GGCAAAGGTGAATTTCTGCTCCG-G 530
consensus_8692#2      CGATCGTCAAGGACGAGCGGTACAAGGACGACC----CGAAACCGAACGAGTTCCCGATG 535
consensus_8692#1      TTGTAGACCACATTTACCATCACGACAAAGAGCCCCCCCGTTGTAACCCCACTTTTTA-G 594
                         * *         *      * *  *         *       *              

consensus_8692#0      ATTGGAATTCAGAGAAAGAGCACCGCTCACGTACGCTAGCGACACTCGCACAGTCTATAT 1607
consensus_8692#3      TTCGAGA--GAAGAAACAAAAAACGATCACCACCACGGGAGTCGCTCG-GGGTCATACAC 587
consensus_8692#2      GCTGAATCGCTGAAGCTGACGATCGCCCGC--ACCCTGCCG-TACTGGAACGACGTTATC 592
consensus_8692#1      CATACGATCGCGACGCAGCCTGTTTCCCAC--ACACAAGAAAACCCTCCATTCCGCCCTT 652
                                                 * *   * *        *               

consensus_8692#0      AGTAGCAACACAAAAGAAAGCATTACGAACTATGCATACATGTAGAGCTGCAGCCGNTAG 1667
consensus_8692#3      ACAAGCGTCTCCGAAGGGAAAGCAGCCAACGGAATCGACA-------------------- 627
consensus_8692#2      ATTCCGCAGCTGAAGGAGGGCAAGAACATTATCATTGCCGCGCACGGCAACAGCCTGC-- 650
consensus_8692#1      GCCGCCAACAACGAGGCAGGTGATACC--TTTCCGTGCTCCCCACAGCCGCC-------- 702
                                   * *                                            

consensus_8692#0      GAGCGATGCTATTGTGTACACCCGTGAAATCTCTCTTTTAATCTCAAAACACCTTCATTC 1727
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      --GCGGTATCGTGAAGCATCTGGACCAGAT------------------------------ 678
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      CACGACGTGTGAAGTANGGTTCCTATACTCTGTGCCACAACAANGATCGAATTTCCACGT 1787
consensus_8692#3      ------------------------------------------------------------
consensus_8692#2      ------------------------------------------------------------
consensus_8692#1      ------------------------------------------------------------
                                                                                  

consensus_8692#0      TT 1789
consensus_8692#3      --
consensus_8692#2      --
consensus_8692#1      --
                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)