These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_87#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CCGCCCACGCGTCCGCGGATCCGTGTTCCGGGCCCACACCAAGAAGCGAAAGGGAGAGCCGAAACTGCGCCATCTCGACTATGCCGAGCGTCACGGTTACCTGAAGGGTGTCGTGAAGCAAATCATCCACGATCCAGGCCGTGGTGCCCCGTTGGCGGTGGTGAACTTCCGCGACCCGTACCGCTTCCGCCTGAGCAAGCAGCTGTTCATCGCGGCCGAGGGCATGTACACCGGCCAGTTCGTGTACTGTGGACGTCGCGCCCAGCTGCAGATCGGTAACGTGCTGCCGATCGGTCTGATGCCGGAAGGTACGATTGTGTGCAATCTGGAGGAGAAGACCGGCGACCGTGGCAAGCTGGCCCGCACGTCGGGCAACTACGCCTCGGTCATTGCGCACAACCCGGACACCAAGCGTACGCGCGTGAAGCTGCCGTCCGGTGCGAAGAAGGTGCTGCCGTCGGCGAACCGTGCCATGATCGGTATCGTGGCCGGCGGTGGCCGTATCGACAAGCCCATCCTGAAGGCGGGCCGTGCGTACCACAAGTACAAGGTGAAGCGCAACTGCTGGCCGAAGGTGCGCGGTGTGGCGATGAACCCCGTCGAGCATCCGCACGGTGGTGGTA] [+] EMBL BM605920 [CCGCCCACGCGTCCGCGGATCCGTGTTCCGGGCCCACACCAAGAAGCGAAAGGGAGAGCCGAAACTGCGCCATCTCGACTATGCCGAGCGTCACGGTTACCTGAAGGGTGTCGTGAAGCAAATCATCCACGATCCAGGCCGTGGTGCCCCGTTGGCGGTGGTGAACTTCCGCGACCCGTACCGCTTCCGCCTGAGCAAGCAGCTGTTCATCGCGGCCGAGGGCATGTACACCGGCCAGTTCGTGTACTGTGGACGTCGCGCCCAGCTGCAGATCGGTAACGTGCTGCCGATCGGTCTGATGCCGGAAGGTACGATTGTGTGCAATCTGGAGGAGAAGACCGGCGACCGTGGCAAGCTGGCCCGCACGTCGGGCAACTACGCCTCGGTCATTGCGCACAACCCGGACACCAAGCGTACGCGCGTGAAGCTGCCGTCCGGTGCGAAGAAGGTGCTGCCGTCGGCGAACCGTGCCATGATCGGTATCGTGGCCGGCGGTGGCCGTATCGACAAGCCCATCCTGAAGGCGGGCCGTGCGTACCACAAGTACAAGGTGAAGCGCAACTGCTGGCCGAAGGTGCGCGGTGTGGCGATGAACCCCGTCGAGCATCCGCACGGTGGTGGTA] consensusID : consensus_87#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [GAATCGCCCGAGGTNTACCCATTGTTTTGAACTGATTTGTGTTGAGTTTCAAAATTGAGCAGAATACTATAATTTTTTTAATCCAACCAAATAAGCTCTCAAAAATAATGCGAACAATCAACCGAGAAAATATTTACACCACCGTATAGCTGAGAAAACGTGAAATTTTTTGTGGGGTTAGTTGAAAAAAACTTTATTTTTGTCACTGAAAAATTCAATTTAAAAAAAGTTACAACTTTTAGGGCAAAATAGCCATCTCTATTTGGGGCAAGTTTGCCACCATCTTTCATAGGCGCGAGCTGTCAAAAATGTAAACATTGTTGTAGCGTTCAGCGGTATGGTGCGCTTTTACGAGCGGATTCTACTCCGGAAAAACAGACCAGCAACAACCCATATTGCGATACAGTTTGTGATGAAAAGGGGTTCATTGGTGACTCAAGACATGTAGGAATACATACACTAGTGGTACAAACGTAATAATTTCCAATTATCAAAGAAATACGGTTATTTTAACCAGGTGGCCGTCTTGCCCCATACGAGTGGCACTCTTGCCCCATAGCCCAAAAAAAAAACAACGTCTTTTTGGACCTTTTTAAAACGCTTCA] [+] EMBL AL934927 [GAATCGCCCGAGGTNTACCCATTGTTTTGAACTGATTTGTGTTGAGTTTCAAAATTGAGCAGAATACTATAATTTTTTTAATCCAACCAAATAAGCTCTCAAAAATAATGCGAACAATCAACCGAGAAAATATTTACACCACCGTATAGCTGAGAAAACGTGAAATTTTTTGTGGGGTTAGTTGAAAAAAACTTTATTTTTGTCACTGAAAAATTCAATTTAAAAAAAGTTACAACTTTTAGGGCAAAATAGCCATCTCTATTTGGGGCAAGTTTGCCACCATCTTTCATAGGCGCGAGCTGTCAAAAATGTAAACATTGTTGTAGCGTTCAGCGGTATGGTGCGCTTTTACGAGCGGATTCTACTCCGGAAAAACAGACCAGCAACAACCCATATTGCGATACAGTTTGTGATGAAAAGGGGTTCATTGGTGACTCAAGACATGTAGGAATACATACACTAGTGGTACAAACGTAATAATTTCCAATTATCAAAGAAATACGGTTATTTTAACCAGGTGGCCGTCTTGCCCCATACGAGTGGCACTCTTGCCCCATAGCCCAAAAAAAAAACAACGTCTTTTTGGACCTTTTTAAAACGCTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_87#0 ---CCGCCCACGCGTCCGCGGATCCGTGTTCCGGGCCCACACCAA--GAAGCGAAAGGGA 55 consensus_87#1 GAATCGCCCGAG-GTNTACCCAT---TGTTTTGAACTGATTTGTGTTGAGTTTCAAAATT 56 ***** * ** * ** **** * * * ** ** consensus_87#0 GAGCCGAAACTGCGCCATCTCGACTATGCCGAGCGTCACGGTTACCTGAAGGGTGTCGTG 115 consensus_87#1 GAGCAGAA--TACTATAATTTTTTTAATCCAACCAAATAAGCT--CTCAAAAATAATGCG 112 **** *** * * * * ** ** * * * * ** ** * * * consensus_87#0 AAGCAAATCATCCACGATCCAGGCCGTGGTGCCCCGTTGGCGGTGGTGAACTTCCGCGAC 175 consensus_87#1 AAC--AATCAACCGAGA---AAATATTTACACCACCGTA-TAGCTGAGAAAACGTGAAAT 166 ** ***** ** ** * * ** * * * * *** * * consensus_87#0 CCGTACCGCTTCCGCCTGAGCAAGCAGCTGTTCATCGCGGCCGAGGGCATGTACACCGGC 235 consensus_87#1 TTTTTGTGGGGTTAGTTGAAAAAAACTTTATTT-TTGTCACTGAAAAATTCAATTTAAAA 225 * * *** ** * ** * * * ** * * consensus_87#0 CAGTTCGTGTACTGT-GGACGTCGCGCCCAGCTGCAGATCGGTAACGT--GCTGCCGATC 292 consensus_87#1 AAAGTTACAACTTTTAGGGCAAAATAGCCATCTCTATTTGGGGCAAGTTTGCCACCATCT 285 * * * * ** * *** ** * * ** * ** ** ** consensus_87#0 GGTCT-GATGCCGGAAGGTACGATTGTGTGCAATCTGGAGGAGAAGACCGGCG------A 345 consensus_87#1 TTCATAGGCGCGAGCTGTCAAAAATGTAAACATTGTTGTAGCGTTCAGCGGTATGGTGCG 345 * * ** * * * * *** ** * * * * * * *** consensus_87#0 CCGTGGCAAGCTGGCCCGCACGTCGGGCAACTACGCCTCGGTCATTGCGCACAACCCGGA 405 consensus_87#1 CTTTTACGAGCGGATTC-TACTCCGGAAAA--ACAGACCAGCAACAACCCATATTGCG-A 401 * * * *** * * ** *** ** ** * * * * ** * ** * consensus_87#0 CACCAAGCGTACGCGCGTGAAGCTGCCGTCCGGTG-CGAAGAAGGTGCTGCCGTCGGCGA 464 consensus_87#1 TAC--AGTTTGTG-ATGAAAAGGGGTTCATTGGTGACTCAAGACATGTAGGAATACATAC 458 ** ** * * * *** * **** * * * ** * * consensus_87#0 ACC-GTGCCATGATCGGTATCGTGGCCGGCGGTGGCCGTATCGACAAGCCCATCCTGAAG 523 consensus_87#1 ACTAGTGGTACAAACG---TAATAATTTCCAATTATCAAAGAAATACGGTTATTTTAACC 515 ** *** * * ** * * * * * * * * * ** * * consensus_87#0 GCG-GGCCGTGCGTACCACAAGTACAAGGTGAAGCGCAACTGC-TGGCC--GAAGGTGCG 579 consensus_87#1 AGGTGGCCGT-CTTGCCCCA--TACGAGTGGCACTCTTGCCCCATAGCCCAAAAAAAAAA 572 * ****** * * ** ** *** ** * * * * * *** ** consensus_87#0 CGGTGTGGCGATGAACCCCGTCGAGCATCCGCACGGTGGTGGTA 623 consensus_87#1 CAACGTCTTTTTGGACCTTTTTAAAACGCTTCA----------- 605 * ** ** *** * * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||