These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 366 fasta sequence [GTACGCTCAAAATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACACATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAACAAC-GAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCGG] [+] EMBL CNS08T10 [GTACGCTCAAAATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACACATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAACAAC GAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCG ] [+] EMBL CNS08CMK [ ACGCTCAAAATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTTGTTGCACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGGGACATGTTTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATTTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAA T CTAAATAAAAATAAACTGTATTCAACAACAAAAAAAAAAAAAAAAAAAAAGGCCACATGTCCCCGgggggggg] consensusID : consensus_8711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 341 fasta sequence [CCGCCCACGCGTCCGCCCACGCCCCCGATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAACAACG] [+] EMBL BM575560 [CCGCCCACGCGTCCGCCCACGCGTCCG TGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAACAACG] [+] EMBL BM592405 [ CCGATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCTTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATC ] [+] EMBL BM627491 [ CCGATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACG AAAAATTCTTACTAAATAAAAATAAACTGT ] [+] EMBL BM643402 [ ccgaaATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGT ] [+] EMBL BM577053 [ ccgaaATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACG AAAAATTCTTACTAAATAAAAATAAACTGT ] [+] EMBL CNS08XAU [ GCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGAC ] consensusID : consensus_8711#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 316 fasta sequence [CCGCGCTCAAAATGAAATACGTGTTTGTCGCTCTGATGCTGGTAGCACTGGTGTTTGCGATCGTTGTTGCACAAGGTATACCCATACCAAGCAGCAGTGAAGTCAAACTGAACCTGGCGAAGAGGAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATTTCTCCTGAAGATGACTAAAAATACTCCCCTAAACGCGTTTACATTTACAGCCAAATAACACAGCAAGCTGCTATAATAATAAGAAATACAAAATGACGAAAAAATCTAAATAAAAATAAACTGTATTC] [+] EMBL BM593282 [CCGCGCTCAAAATGAAATACGTGTTTGTCGCTCTGATGCTGGTAGCACTGGTGTTTGCGATCGTTGTTGCACAAGGTATACCCATACCAAGCAGCAGTGAAGTCAAACTGAACCTGGCGAAGAGGAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATTTCTCCTGAAGATGACTAAAAATACTCCCCTAAACGCGTTTACATTTACAGCCAAATAACACAGCAAGCTGCTATAATAATAAGAAATACAAAATGACGAAAAAATCTAAATAAAAATAAACTGTATTC] [+] EMBL BM649963 [ CAAACTGAACCTGGCGAAGAGGAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAGGCGACGGCATTTCTCCTGAAGATGACTAAGAATACTCCCCTAAACGCGCTTACATTTACAGCCAAATAACACAGCAAGCTGCTATAATAATAGGAAATACAAAATGACGAACAAATCTACGAAAAAATct ] consensusID : consensus_8711#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [GGAATTCCTCGAGGACTGTTGGCCCACTGGAGAGTTACGCTCAAAATAAAATACGTTTTAGTCGCCCTGATGCTGGTAGAACTGGTGTTTGCGATCGTTTTGGACAAGGTGTACCCATTACATTGGGGAGTGAAGAAAATCCGGTGAAAAGAAGCCTCTCGCAGCATCGTGCCGGAT] [-] EMBL CNS08CML [GGAATTCCTCGAGGACTGTTGGCCCACTGGAGAGTTACGCTCAAAATAAAATACGTTTTAGTCGCCCTGATGCTGGTAGAACTGGTGTTTGCGATCGTTTTGGACAAGGTGTACCCATTACATTGGGGAGTGAAGAAAATCCGGTGAAAAGAAGCCTCTCGCAGCATCGTGCCGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8711#0 ----------------------------------GTACGCTCAAAATGAAATACGTGTTA 26 consensus_8711#1 ------------------CCGCCCACGCGTCCGCCCACGCCCCCGATGAAATACGTGTTA 42 consensus_8711#2 ----------------------------------CCGCGCTCAAAATGAAATACGTGTTT 26 consensus_8711#3 GGAATTCCTCGAGGACTGTTGGCCCACTGGAGAGTTACGCTCAAAATAAAATACGTTTTA 60 *** * ** ******** ** consensus_8711#0 GTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATA 86 consensus_8711#1 GTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATA 102 consensus_8711#2 GTCGCTCTGATGCTGGTAGCACTGGTGTTTGCGATCGTTGTTGCACAAGGTATACCCATA 86 consensus_8711#3 GTCGCCCTGATGCTGGTAGAACTGGTGTTTGCGATCGTT-TTGGACAAGGTGTACCCATT 119 ***** ************* ****************** * ******* ******* consensus_8711#0 ACATTGAGCAGTGAAGA------AAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCA 140 consensus_8711#1 ACATTGAGCAGTGAAGA------AAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCA 156 consensus_8711#2 CCAAGCAGCAGTGAAGTCAAACTGAACCTGGCGAAGAGGAGCATCTCGCAGCATCGTGCA 146 consensus_8711#3 ACATTGGGGAGTGAAGA------AAATCCGGTGAAAAGAAGCCTCTCGCAGCATCGTGCC 173 ** * ******* ** * ** *** ** *** **************** consensus_8711#0 GCATTTACATCGTACCTTGCACATGACGAAAGCGACA-CATGTCTCCTGATGAAGGATAA 199 consensus_8711#1 GCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAA 216 consensus_8711#2 GCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATTTCTCCTGAAGATGACTAA 206 consensus_8711#3 GGAT-------------------------------------------------------- 177 * ** consensus_8711#0 AAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATT 259 consensus_8711#1 AAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATT 276 consensus_8711#2 AAATACTCCCCTAAACGCGTTTACATTTACAGCCAAATAACACAGCAAGCTGCTATAAT- 265 consensus_8711#3 ------------------------------------------------------------ consensus_8711#0 TGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAA 319 consensus_8711#1 TGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAA 336 consensus_8711#2 --AATAAGAAATACAAAATGACGAAAAAAT-----CTAAATAAAAATAAACTGTATTC-- 316 consensus_8711#3 ------------------------------------------------------------ consensus_8711#0 CAACGAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCGG 366 consensus_8711#1 CAACG------------------------------------------ 341 consensus_8711#2 ----------------------------------------------- consensus_8711#3 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||