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Anopheles gambiae
cluster # 8718 cluster # 8718       Sequences # 11       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8718#0 length = 987 sequences # 3  
consensus_8718#1 length = 857 sequences # 1  
consensus_8718#2 length = 657 sequences # 2  
consensus_8718#3 length = 632 sequences # 2  
consensus_8718#4 length = 568 sequences # 2  
consensus_8718#5 length = 269 sequences # 1  

consensusID : consensus_8718#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 987
fasta sequence
                              [AATTGCCCGAGGTCATCACACAACAACGATGCGGTCGTCCTGGCTTGAGGAACGCAGAGTGAATCGAAAACGGAAGCAATAAGCTTCCCAAAAACCTTTCCCTCATCATGGGCGACAATAACGCGTTCGTGCTGGATAATGGTGCATTCTACGCCAAGCTTGGTTTATCCGATGACCCCGAACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCATCG-GCAACCAGATCGAAGAGTGCCGCGACGCGTCAGGCCTGTTCTATATCCTTTGCTTTCAGCGCGGCTACCTGGTGAACTGGGATGTGCAGAAAACGGTCTGGGACTACCTTTTCAGCCCGGACTGCTGTCCGGTGCAGTTTGCCGACACGCCGCTCCTCATCACCGAGCCGCTGTTCAACTTCGGCTCGATCCAGGAAGCGATGCTGGAGATCCTGTACGAAGAGTACGACTGCGATGCGGTATGCAAATCGACGGCCATCGATTTGGCGGCGTTCAACTACACGCACAGCGAGCAAACGGAACAGCCGGAGGGCAAACGGCCACTCGCCTGCGTGGTGGTGGA--GATGGGCTTCAGCTTCACGCACGTGGTGCCGTTCGTGAAGGGCTGCAAGGTGCGGGAAGCGATTCGGCGCATCGACGTCGGCGGGAAGGTGCTGACGAACCATCTGGTGGAGAAGTACGAGAGCTAGCAGCGGTGTAGAAAGGCGAAATGCCGCA-GAGGGACCGATATTTCAGGATAACATCCAGCACGCATTTCCCGCCCTACCGCATCGATGTTCGCATGGACGACTATGATCAACTTCAACATTATTCCAACATCGACGGGATGTTACACACACGAGATGAGGGATGAGTAGCAGTTATACGGATGTGTGTTACTCTATACAGGAAGATGTGGAGCCTGTATCAGGATTGGTCACGTTTTTCGTCACAAACTAAAATACACACTTTCAGCCCTTCTTA]

[+] EMBL AL934722             [AATTGCCCGAGGTCATCACACAACAACGATGCGGTCGTCCTGGCTTGAGGAACGCAGAGTGAATCGAAAACGGAAGCAATAAGCTTCCCAAAAACCTTTCCCTCATCATGGGCGACAATAACGCGTTCGTGCTGGATAATGGTGCATTCTACGCCAAGCTTGGTTTATCCGATGACCCCGAACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCATCG GCAACCAGATCGAAGAGTGCCGCGACGCGTCAGGCCTGTTCTATATCCTTTGCTTTCAGCGCGGCTACCTGGTGAACTGGGATGTGCAGAAAACGGTCTGGGACTACCTTTTCAGCCCGGACTGCTGTCCGGTGCAGTTTGCCGACACGCCGCTCCTCATCACCGAGCCGCTGTTCAACTTCGGCTCGATCCAGGAAGCGATGCTGGAGATCCTGTACGAAGAGTACGACTGCGATGCGGTATGCAAATCGACGGCCATCGATTTGGCGGCGTTCAACTACACGCACAGCGAGCAAACGGAACAGCCGGAGGGCAAACGGCCACTCGCCTGCGTGGTGGTGGACNNATGGGCTTCAGCTTCACGCACGTGGTGCCGT                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CNS08QCE             [                                      gCTGGCTTGAGG ACGCAGAGTGAATCGGAAACGGAAGCAATAAGCTTCCCAAAAACCTTTCCCTCATCATGGGCGACAATAACGCGTTCGTGCTGGATAATGGTGCATTCTACGCCAAGCTTGGTTTATCCGATGACCCCGAACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCATCGCGCAACCAGATCGAAGAGTGCCGCGACGCGTCAGGCCTGTTCTATATCCTTTGCTTTCAGCGCGGCTACCTGGTGAACTGGGATGTGCAGAAAACGGTCTGGGACTACCTTTTCAGCCCGGACTGCTGTCCGGTGCAGTTTGCCGACACGCCGCTCCTCATCACCGAGCCGCTGTTCAACTTCGGCTCGATCCAGGAAGCGATGCTGGAGATCCTGTACGAAGAGTACGACTGCGATGCGGTATGCAAATCGACGGCCATCGATTTGGCGGCGTTCAACTACACGCACAGCGAGCAAACGGAACAGCCGGAGGGCAAACGGCCACTCGCCTGCGTGGTGGTGGA  GATGGGCTTCAGCTTCACGCACGTGGTGCCGTTCGTGAAGGGCTGCAAGGTGCGGGAAGCGATTCGGCGCATCGACGTCGGCGGGAAGGTGCTGACGAACCATCTGGTGGAGAAGTACGAGAGCTAGCAGCGGTGTAGAAAGGCGAAATGCCGCA GAGGGACCGATATTTCAGGATAACATCCAGCACGCATTTCCCGCCCTACCGCATCGATGTTCGCATGGACGACTATGATCAACTTCAACATTATTCCAACATCGACGGGATGTTACACACACGAGATGAGGGATGAGTAGCAGTTATACGGATGTGTGTTACTCTATACAGGAAGATGTGGAGCCTGTATCAGGATTGGTCACGTTT                                       ]
[-] EMBL CNS08QCF             [                                                                                             ACCTTTCCCTCATCATGGGCGACAATAACGCGTTCGTGCTGGATAATGGTGCATTCTACGCCAAGCTTGGTTTATCCGATGACCCCGAACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCATCG GCAACCAGATCGAAGAGTGCCGCGACGCGTCAGGCCTGTTCTATATCCTTTTGTTTCAGCGCGGCTACCTGGTGAACTGGGATGTGCAGAAAACGGTCTGGGACTACCTTTTCAGCCCGGACTGCTGTCCGGTGCAGTTTGCCGACACGCCGCTCCTCATCACCGAGCCGCTGTTCAACTTCGGCTCGATCCAGGAAGCGATGCTGGAGATCCTGTACGAAGAGTACGACTGCGATGCGGTATGCAAATCGACGGCCATCGATTTGGCGGCGTTCAACTACACGCACAGCGAGCAAACGGAACAGCCGGAGGGCAAACGGCCACTCGCCTGCGTGGTGGTGGA  GATGGGCTTCAGCTTAACGCACGTGGTGCCGTTCGTGAAGGGCTGCAAGGTGCGGGAAGCGATTCGGCGCATCGACGTCGGCGGGAAGGTGCTGACGAACCATCTGGTGGAGAAGTACGAGAGCTAGCAGCGGTGTAGAAAGGCGAAATGCCGCAGGCAGGA CGATATTTCAGGATAACATCCAGCACGCATTTCCCGCCCTACCGCATCGATGTTCGCATGGACGACTATGATCAACTTCAACATTATTCCAACATCGACGGGAT TTACACACACGAGATGAGGGATGAGTAGCAGTAATACGGATGTGTGTTACTCTATACAGGAAGATGTGGAGCCTGTATCAGGATTGGTCACGTTTTTCGTCACAAACTAAAATACACACTTTCAGCCCTTCTTA]


>consensus_8718#0 AATTGCCCGAGGTCATCACACAACAACGATGCGGTCGTCCTGGCTTGAGGAACGCAGAGT GAATCGAAAACGGAAGCAATAAGCTTCCCAAAAACCTTTCCCTCATCATGGGCGACAATA ACGCGTTCGTGCTGGATAATGGTGCATTCTACGCCAAGCTTGGTTTATCCGATGACCCCG AACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCA TCGGCAACCAGATCGAAGAGTGCCGCGACGCGTCAGGCCTGTTCTATATCCTTTGCTTTC AGCGCGGCTACCTGGTGAACTGGGATGTGCAGAAAACGGTCTGGGACTACCTTTTCAGCC CGGACTGCTGTCCGGTGCAGTTTGCCGACACGCCGCTCCTCATCACCGAGCCGCTGTTCA ACTTCGGCTCGATCCAGGAAGCGATGCTGGAGATCCTGTACGAAGAGTACGACTGCGATG CGGTATGCAAATCGACGGCCATCGATTTGGCGGCGTTCAACTACACGCACAGCGAGCAAA CGGAACAGCCGGAGGGCAAACGGCCACTCGCCTGCGTGGTGGTGGAGATGGGCTTCAGCT TCACGCACGTGGTGCCGTTCGTGAAGGGCTGCAAGGTGCGGGAAGCGATTCGGCGCATCG ACGTCGGCGGGAAGGTGCTGACGAACCATCTGGTGGAGAAGTACGAGAGCTAGCAGCGGT GTAGAAAGGCGAAATGCCGCAGAGGGACCGATATTTCAGGATAACATCCAGCACGCATTT CCCGCCCTACCGCATCGATGTTCGCATGGACGACTATGATCAACTTCAACATTATTCCAA CATCGACGGGATGTTACACACACGAGATGAGGGATGAGTAGCAGTTATACGGATGTGTGT TACTCTATACAGGAAGATGTGGAGCCTGTATCAGGATTGGTCACGTTTTTCGTCACAAAC TAAAATACACACTTTCAGCCCTTCTTA



consensusID : consensus_8718#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 857
fasta sequence
                              [GGCTTGAGGAACGCAGAGTGAATCGAAAACGGAAGCAATAAGCTTCCCAAAAACCTTTCCCTCATCATGGGCGACAATAACGCGTTCGTGCTGGATAATGGTGCATTTTATGCCAAGCTTGGTTTGTCCGATGACTCCGAACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCATCGGCAACCAGATCGAAGAGTGCCGCGACGCGTCGGGCCTGTTCTACATCCTCTGCTTTCAGCGCGGCCACTCGCCTGCGTGGTGGTGGAGATGGGCTTCAGCTTCACGCACGTGGTGCCGTTCGTGAAGGGCTGCAAGGTGCGGGAAGCGATCCGACGCATCGACGTCGGCGGGAAGGTGCTGACGAACCATTTGAAGGAAATCATTTCCTACCGGCAGCTGAACGTGATGGACGAATCGTACGTGATCAATCAGGTGAAGGAGGACAGCTGCTTCGTGTCGCAGAACTTCAACGAGGACATGCGGATAGCGCGCAAACGCATCCCGGACAATACGATCCTGCGGGAGTACGTGCTGCCGGACTACACGCAGATACGGCGCGGATTTTTACGCAAACCGAACGAATCGGGTGGGGCGGGCGATGGTGGAGAGGAGCTACAGACGGTGCGGCTCGGTAACGACGGTTCGTTATACCGGAGATACTGTTCCACCCGTCGGACGTCGGGATACAGCAGATGGGCGTACCGGAAGCGATCGTGGATGCGATTAATCTGTGCCCGGAGGAGACACGGCCGCATCTGTTCGCGAACATTGTCGTGTGTTGTGGATGTGCCCTGTTTCCCGGCATGCAGTCGCGCGTGGAACGGGACGTCCGAG]

[+] EMBL CNS09LR0             [GGCTTGAGGAACGCAGAGTGAATCGAAAACGGAAGCAATAAGCTTCCCAAAAACCTTTCCCTCATCATGGGCGACAATAACGCGTTCGTGCTGGATAATGGTGCATTTTATGCCAAGCTTGGTTTGTCCGATGACTCCGAACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCATCGGCAACCAGATCGAAGAGTGCCGCGACGCGTCGGGCCTGTTCTACATCCTCTGCTTTCAGCGCGGCCACTCGCCTGCGTGGTGGTGGAGATGGGCTTCAGCTTCACGCACGTGGTGCCGTTCGTGAAGGGCTGCAAGGTGCGGGAAGCGATCCGACGCATCGACGTCGGCGGGAAGGTGCTGACGAACCATTTGAAGGAAATCATTTCCTACCGGCAGCTGAACGTGATGGACGAATCGTACGTGATCAATCAGGTGAAGGAGGACAGCTGCTTCGTGTCGCAGAACTTCAACGAGGACATGCGGATAGCGCGCAAACGCATCCCGGACAATACGATCCTGCGGGAGTACGTGCTGCCGGACTACACGCAGATACGGCGCGGATTTTTACGCAAACCGAACGAATCGGGTGGGGCGGGCGATGGTGGAGAGGAGCTACAGACGGTGCGGCTCGGTAACGACGGTTCGTTATACCGGAGATACTGTTCCACCCGTCGGACGTCGGGATACAGCAGATGGGCGTACCGGAAGCGATCGTGGATGCGATTAATCTGTGCCCGGAGGAGACACGGCCGCATCTGTTCGCGAACATTGTCGTGTGTTGTGGATGTGCCCTGTTTCCCGGCATGCAGTCGCGCGTGGAACGGGACGTCCGAG]


>consensus_8718#1 GGCTTGAGGAACGCAGAGTGAATCGAAAACGGAAGCAATAAGCTTCCCAAAAACCTTTCC CTCATCATGGGCGACAATAACGCGTTCGTGCTGGATAATGGTGCATTTTATGCCAAGCTT GGTTTGTCCGATGACTCCGAACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCC GAACGGAGGCGACCGTTCATCGGCAACCAGATCGAAGAGTGCCGCGACGCGTCGGGCCTG TTCTACATCCTCTGCTTTCAGCGCGGCCACTCGCCTGCGTGGTGGTGGAGATGGGCTTCA GCTTCACGCACGTGGTGCCGTTCGTGAAGGGCTGCAAGGTGCGGGAAGCGATCCGACGCA TCGACGTCGGCGGGAAGGTGCTGACGAACCATTTGAAGGAAATCATTTCCTACCGGCAGC TGAACGTGATGGACGAATCGTACGTGATCAATCAGGTGAAGGAGGACAGCTGCTTCGTGT CGCAGAACTTCAACGAGGACATGCGGATAGCGCGCAAACGCATCCCGGACAATACGATCC TGCGGGAGTACGTGCTGCCGGACTACACGCAGATACGGCGCGGATTTTTACGCAAACCGA ACGAATCGGGTGGGGCGGGCGATGGTGGAGAGGAGCTACAGACGGTGCGGCTCGGTAACG ACGGTTCGTTATACCGGAGATACTGTTCCACCCGTCGGACGTCGGGATACAGCAGATGGG CGTACCGGAAGCGATCGTGGATGCGATTAATCTGTGCCCGGAGGAGACACGGCCGCATCT GTTCGCGAACATTGTCGTGTGTTGTGGATGTGCCCTGTTTCCCGGCATGCAGTCGCGCGT GGAACGGGACGTCCGAG



consensusID : consensus_8718#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 657
fasta sequence
                              [GCAGGTAAACTGAGGCTACATTTTATTACATTCTTACCGTTTAATTACATATTTAAAAAAGAAAACATTTCATCGCTAAACCGTACATGAGAACAGAAAGTCGTTAACGTTCTAACACAAAAGCGAACGTGGTGCTGTTGCTGTCTAGTAAAAGGAGGGTAGTGTTGTGAGCTGTTTCTAATCTCTCTCTCTCGGTGTTTCACGGTTTTCTATATTCTAACCATGCATACTCCGTCTATGGGAACTTGAAGGATAACATCCAGCACGCATTTCCCGCCCTACCGCATCGATGTTCGCATGGACGACTATAATCAACTTCAACATTATTCCAACATCGACGGGATGTTACACACACGAGATGAGGGATGAGTAGCAGTAATACGGATGTGTGTTACTCTATACAGGAAGATGTGGAGCCTGTATCAGGATTGGTCACGTTTTTCGTCACAAACTAAAATACACACTTTCAATTTTCTACTAAACCATCGCGTGTCCGCTTACAATGAACAGAACACGGGGGGTGGTGGTTGAGGGTGGATGAGAATATTTGAGAATTCAGTTCCGAACACAACAGACACACCACACACTCACACACATAACATGAACACGCACACAAACAGTACCGCGTTTTTGGGGTGGCCGCTGTTGGGATGGGAT]

[+] EMBL CNS08HV9             [GCAGGTAAACTGAGGCTACATTTTATTACATTCTTACCGTTTAATTACATATTTAAAAAAGAAAACATTTCATCGCTAAACCGTACATGAGAACAGAAAGTCGTTAACGTTCTAACACAAAAGCGAACGTGGTGCTGTTGCTGTCTAGTAAAAGGAGGGTAGTGTTGTGAGCTGTTTCTAATCTCTCTCTCTCGGTGTTTCACGGTTTTCTATATTCTAACCATGCATACTCCGTCTATGGGAACTTGAAGGATAACATCCAGCACGCATTTCCCGCCCTACCGCATCGATGTTCGCATGGACGACTATAATCAACTTCAACATTATTCCAACATCGACGGGATGTTACACACACGAGATGAGGGATGAGTAGCAGTAATACGGATGTGTGTTACTCTATACAGGAAGATGTGGAGCCTGTATCAGGATTGGTCACGTTTTTCGTCACAAACTAAAATACACACTTTCAATTTTCTACTAAACCATCGCGTGTCCGCTTACAATGAACAGAACACGGGGGGTGGTGGTTGAGGGTGGATGAGAATATTTGAGAATTCAGTTCCGAACACAACAGACACACCACACACTCACACACATAACATGAACACGCACACAAACAGTACCGCGTTTTTGGGGTGGCCGCTGTTGGGATGGGAT]
[+] EMBL CNS08EGD             [        tCTGAGGCTACATTTTATTACATTCTTACCGTTTAATTACATATTTAAAAAAGAAAACATTTCATCGCTAAACCGTACATGAGAACAGAAAGTCGTTAACGTTCTAACACAAAAGCGAACGTGGTGCTGTTGCTGTCTAGTAAAAGGAGGGTAGTGTTGTGAGCTGTTTCTAATCTCTCTCTCTCGGTGTTTCACGGTTTTCTATATTCTAACCATGCATACTCCGTCTATGGGAACTTGAAGGATAACATCCAGCACGCATTTCCCGCCCTACCGCATCGATGTTCGCATGGACGACTATGATCAACTTCAACATT                                                                                                                                                                                                                                                                                                                                            ]


>consensus_8718#2 GCAGGTAAACTGAGGCTACATTTTATTACATTCTTACCGTTTAATTACATATTTAAAAAA GAAAACATTTCATCGCTAAACCGTACATGAGAACAGAAAGTCGTTAACGTTCTAACACAA AAGCGAACGTGGTGCTGTTGCTGTCTAGTAAAAGGAGGGTAGTGTTGTGAGCTGTTTCTA ATCTCTCTCTCTCGGTGTTTCACGGTTTTCTATATTCTAACCATGCATACTCCGTCTATG GGAACTTGAAGGATAACATCCAGCACGCATTTCCCGCCCTACCGCATCGATGTTCGCATG GACGACTATAATCAACTTCAACATTATTCCAACATCGACGGGATGTTACACACACGAGAT GAGGGATGAGTAGCAGTAATACGGATGTGTGTTACTCTATACAGGAAGATGTGGAGCCTG TATCAGGATTGGTCACGTTTTTCGTCACAAACTAAAATACACACTTTCAATTTTCTACTA AACCATCGCGTGTCCGCTTACAATGAACAGAACACGGGGGGTGGTGGTTGAGGGTGGATG AGAATATTTGAGAATTCAGTTCCGAACACAACAGACACACCACACACTCACACACATAAC ATGAACACGCACACAAACAGTACCGCGTTTTTGGGGTGGCCGCTGTTGGGATGGGAT



consensusID : consensus_8718#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 632
fasta sequence
                              [ATCCCCGNGGTTNGACATAACGCGTTCGTGCTGGATAATGGTGCATTCTACGCCAAGCTTGGTTTATCCGATGACCCCGAACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCATCGGCAACCAGATCGAAGAGTGCCGCGACGCGTCAGGCCTGTTCTATATCCTTTGCTTTCAGCGCGGCTACCTGGTGAACTGGGATGTGCAGAAAACGGTCTGGGACTACCTTTTCAGCCCGGACTGCTGTCCGGTGCAGTTTGCCGACACGCCGCTCCTCATCACCGAGCCGCTGTTCAACTTCGGCTCGATCCAGGAAGCGATGCTGGAGATCCTGTACGAAGAGTACGACTGCGATGCGGTATGCAAATCGAGGCATCGATTTGGCCGGCGTTCAACTACACGCACAGCGAGCAACACGGAACAGCCGTGAGTGGCAAACGGCACTCGCCTGCGTGGTGGTGGCAGATGGGCTTCAGCTTCACGCACGTGGTGCCGTTCGTGAAGGGCTGCCAGGTGCGGGAAGCGATTCGGCGCATCGACGTCGGCGGGAAGGTGCTGACGAACCATCTGAAGGAAATCATCTCCTACGGCAGCTGAACCGTGATGGAC]

[+] EMBL AL694939             [ATCCCCGNGGTTNGACATAACGCGTTCGTGCTGGATAATGGTGCATTCTACGCCAAGCTTGGTTTATCCGATGACCCCGAACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCATCGGCAACCAGATCGAAGAGTGCCGCGACGCGTCAGGCCTGTTCTATATCCTTTGCTTTCAGCGCGGCTACCTGGTGAACTGGGATGTGCAGAAAACGGTCTGGGACTACCTTTTCAGCCCGGACTGCTGTCCGGTGCAGTTTGCCGACACGCCGCTCCTCATCACCGAGCCGCTGTTCAACTTCGGCTCGATCCAGGAAGCGATGCTGGAGATCCTGTACGAAGAGTACGACTGCGATGCGGTATGCAAATCGAGGCATCGATTTGGCCGGCGTTCAACTACACGCACAGCGAGCAACACGGAACAGCCGTGAGTGGCAAACGGCACTCGCCTGCGTGGTGGTGGCAGATGGGCTTCAGCTTCACGCACGTGGTGCCGTTCGTGAAGGGCTGCCAGGTGCGGGAAGCGATTCGGCGCATCGACGTCGGCGGGAAGGTGCTGACGAACCATCTGAAGGAAATCATCTCCTACGGCAGCTGAACCGTGATGGAC]
[+] EMBL AGA285096            [                                                        GCTTGGTTTATCCGATGACCCCGAACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCATCGGCAACCAGATCGAAGAGTGCCGCGACGCGTCAGGCCTGTTCTATATCCTTTGCTTTCAGCGCGGCTACCTGGTGAACTGGGATGTGCAGAAAACGGTCTGGGACTACCTTTTCAGCCCGGACTGCTGTCCGGTGCAGTTTGCCGACACGCCGCTCCTCATCACCGAGCCGC                                                                                                                                                                                                                                                                                                                               ]


>consensus_8718#3 ATCCCCGNGGTTNGACATAACGCGTTCGTGCTGGATAATGGTGCATTCTACGCCAAGCTT GGTTTATCCGATGACCCCGAACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCC GAACGGAGGCGACCGTTCATCGGCAACCAGATCGAAGAGTGCCGCGACGCGTCAGGCCTG TTCTATATCCTTTGCTTTCAGCGCGGCTACCTGGTGAACTGGGATGTGCAGAAAACGGTC TGGGACTACCTTTTCAGCCCGGACTGCTGTCCGGTGCAGTTTGCCGACACGCCGCTCCTC ATCACCGAGCCGCTGTTCAACTTCGGCTCGATCCAGGAAGCGATGCTGGAGATCCTGTAC GAAGAGTACGACTGCGATGCGGTATGCAAATCGAGGCATCGATTTGGCCGGCGTTCAACT ACACGCACAGCGAGCAACACGGAACAGCCGTGAGTGGCAAACGGCACTCGCCTGCGTGGT GGTGGCAGATGGGCTTCAGCTTCACGCACGTGGTGCCGTTCGTGAAGGGCTGCCAGGTGC GGGAAGCGATTCGGCGCATCGACGTCGGCGGGAAGGTGCTGACGAACCATCTGAAGGAAA TCATCTCCTACGGCAGCTGAACCGTGATGGAC



consensusID : consensus_8718#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 568
fasta sequence
                              [AGTCGCTCAGCTTCATGAAATCGTGCATGAGCCGCAACGAGTACGAAGAGTACGGCACTCGGCATCTGGTGGAGAAGTACGAGAGCTAGCAGCGGTGTAGAAAGGCGAAATGCCGCAGGCAGGACGATATTTCAGGATAACATCCAGCACGCATTTCCCGCCCTACCGCATCGATGTTCGCATGGACGACTATGATCAACTTCAACATTATTCCAACATCGACGGGATGTTACACACACGAGATGAGGGATGAGTAGCAGTAATACGGATGTGTGTTACTCTATACAGGAAGATGTGGAGCCTGTATCAGGATTGGTCACGTTTTTCGTCACAAACTAAAATACACACTTTCAATTTTCTACTAAAAAAAAGCGTGTCCGCTTACAATGAACAGAACACGGGGGGTGGGGGTTGAGGGGGGATGAGAAAATTTGAGAATTCAGTTCCGAACACAACAGACACACCACACACTCACACACATAACATGAACACGCACACAAACAGTACCGCGTTTTTGGGGGGGCCGCGGTGGGGAGGGGATTTTTGCCGCCCTAGAGATTAGTAACAC]

[-] EMBL AGA283805            [AGTCGCTCAGCTTCATGAAATCGTGCATGAGCCGCAACGAGTACGAAGAGTACGGCACTCGGCATCTGGTGGAGAAGTACGAGAGCTAGCAGCGGTGTAGAAAGGCGAAATGCCGCAGGCAGGACGATATTTCAGGATAACATCCAGCACGCATTTCCCGCCCTACCGCATCGATGTTCGCATGGACGACTATGATCAACTTCAACATTATTCCAACATCGACGGGATGTTACACACACGAGATGAGGGATGAGTAGCAGTAATACGGATGTGTGTTACTCTATACAGGAAGATGTGGAGCCTGTATCAGGATTGGTCACGTTTTTCGTCACAAACTAAAATACACACTTTCAATTTTCTACTAAAAAAAA                                                                                                                                                                                                     ]
[+] EMBL CNS08JA5             [                                                                                                                                                                                                                                                                                         TAAACAGGAAGATGTGGAGCCCGTATCAGGATTGGTCACGTTTTTCGTCACAAACAAAAAAACACACTTTCAATTTTCTACTAAACCATCGCGTGTCCGCTTACAATGAACAGAACACGGGGGGTGGGGGTTGAGGGGGGATGAGAAAATTTGAGAATTCAGTTCCGAACACAACAGACACACCACACACTCACACACATAACATGAACACGCACACAAACAGTACCGCGTTTTTGGGGGGGCCGCGGTGGGGAGGGGATTTTTGCCGCCCTAGAGATTAGTAACAC]


>consensus_8718#4 AGTCGCTCAGCTTCATGAAATCGTGCATGAGCCGCAACGAGTACGAAGAGTACGGCACTC GGCATCTGGTGGAGAAGTACGAGAGCTAGCAGCGGTGTAGAAAGGCGAAATGCCGCAGGC AGGACGATATTTCAGGATAACATCCAGCACGCATTTCCCGCCCTACCGCATCGATGTTCG CATGGACGACTATGATCAACTTCAACATTATTCCAACATCGACGGGATGTTACACACACG AGATGAGGGATGAGTAGCAGTAATACGGATGTGTGTTACTCTATACAGGAAGATGTGGAG CCTGTATCAGGATTGGTCACGTTTTTCGTCACAAACTAAAATACACACTTTCAATTTTCT ACTAAAAAAAAGCGTGTCCGCTTACAATGAACAGAACACGGGGGGTGGGGGTTGAGGGGG GATGAGAAAATTTGAGAATTCAGTTCCGAACACAACAGACACACCACACACTCACACACA TAACATGAACACGCACACAAACAGTACCGCGTTTTTGGGGGGGCCGCGGTGGGGAGGGGA TTTTTGCCGCCCTAGAGATTAGTAACAC



consensusID : consensus_8718#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence
                              [AGAAAGGCGAAATGCCGCAGGCAGGACGATATTTCAGGATAACATCCAGCACGCATTTCCCCCCCTACCGCATCGATGTTCGCATGGACGACTATGATCAACTTCATCATTATTCCAACATCGACGGGGTTTACACACATACGAGTTGAGGGATGAGTAGCAGTAATACGGATGTGTGCTACTCTATACAGGAAGATGTGGAGCCTGTTTCAGGATTGGTTACGATTTTGCGTCACAAACTAAAATAAACACACTTCTTTCGAAGACTC]

[-] EMBL CNS09LR1             [AGAAAGGCGAAATGCCGCAGGCAGGACGATATTTCAGGATAACATCCAGCACGCATTTCCCCCCCTACCGCATCGATGTTCGCATGGACGACTATGATCAACTTCATCATTATTCCAACATCGACGGGGTTTACACACATACGAGTTGAGGGATGAGTAGCAGTAATACGGATGTGTGCTACTCTATACAGGAAGATGTGGAGCCTGTTTCAGGATTGGTTACGATTTTGCGTCACAAACTAAAATAAACACACTTCTTTCGAAGACTC]


>consensus_8718#5 AGAAAGGCGAAATGCCGCAGGCAGGACGATATTTCAGGATAACATCCAGCACGCATTTCC CCCCCTACCGCATCGATGTTCGCATGGACGACTATGATCAACTTCATCATTATTCCAACA TCGACGGGGTTTACACACATACGAGTTGAGGGATGAGTAGCAGTAATACGGATGTGTGCT ACTCTATACAGGAAGATGTGGAGCCTGTTTCAGGATTGGTTACGATTTTGCGTCACAAAC TAAAATAAACACACTTCTTTCGAAGACTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8718#0      AATTGCCCGAGGTCATCACACAACAACGATGCGGTCGTCCTGGCTTGAGGAACGCAGAGT 60
consensus_8718#3      ------------------------------------------------------------
consensus_8718#4      ------------------------------------------------------------
consensus_8718#5      ------------------------------------------------------------
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      -----------------------------------------GGCTTGAGGAACGCAGAGT 19
                                                                                  

consensus_8718#0      GAATCGAAAACGGAAGCAATAAGCTTCCCAAAAACCTTTCCCTCATCATGGGCGACAATA 120
consensus_8718#3      -----------------------------------------ATCCCCGNGGTTNGACATA 19
consensus_8718#4      ------------------------------------------------------------
consensus_8718#5      ------------------------------------------------------------
consensus_8718#2      -----------------------------------GCAGGTAAACTGAGGCTACATTTTA 25
consensus_8718#1      GAATCGAAAACGGAAGCAATAAGCTTCCCAAAAACCTTTCCCTCATCATGGGCGACAATA 79
                                                                                  

consensus_8718#0      ACGCGTTCGTGCTGGATAATGGTGCATTCTACGCCAAGCTTGGTTTATCCGATGACCCCG 180
consensus_8718#3      ACGCGTTCGTGCTGGATAATGGTGCATTCTACGCCAAGCTTGGTTTATCCGATGACCCCG 79
consensus_8718#4      ------------------------------------------------------------
consensus_8718#5      ------------------------------------------------------------
consensus_8718#2      TTACATTCTTACCGTTTAATTACATATTTAAAAAAGAAAACATTTCATCGCTAAACCGTA 85
consensus_8718#1      ACGCGTTCGTGCTGGATAATGGTGCATTTTATGCCAAGCTTGGTTTGTCCGATGACTCCG 139
                                                                                  

consensus_8718#0      AACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCA 240
consensus_8718#3      AACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCA 139
consensus_8718#4      ---------------------------------AGTCGCTCAGCTTCATGAAATCGTGCA 27
consensus_8718#5      ------------------------------------------------------------
consensus_8718#2      CATGAGAA------CAGAAAGTCGTTAACGTTCTAACACAAAAGCGAACGTGGTGCTGTT 139
consensus_8718#1      AACCGAAAACCATCCTGAACTGCATCACAAAAGCCAAATCCGAACGGAGGCGACCGTTCA 199
                                                                                  

consensus_8718#0      TCGGCAACCAGATCGAAGAGTGCCGCGACGCGTCAGGCCTGTTCTATATCCTTTGCTTTC 300
consensus_8718#3      TCGGCAACCAGATCGAAGAGTGCCGCGACGCGTCAGGCCTGTTCTATATCCTTTGCTTTC 199
consensus_8718#4      TGAGCCGCAACGAGTACGAAGAGTACGGCACTCGGCATCTGGTGGAGAAGTACGAGAGCT 87
consensus_8718#5      ------------------------------------------------------------
consensus_8718#2      GCTGTCTAGTAAAAGGAGGGTAGTGTTGTGAGCTGTTTCTAATCTCTCTCTCTCGGTGTT 199
consensus_8718#1      TCGGCAACCAGATCGAAGAGTGCCGCGACGCGTCGGGCCTGTTCTACATCCTCTGCTTTC 259
                                                                                  

consensus_8718#0      AGCGCGGCTACCTG-------GTGAACTGGGATGT---------------GCAGAAAACG 338
consensus_8718#3      AGCGCGGCTACCTG-------GTGAACTGGGATGT---------------GCAGAAAACG 237
consensus_8718#4      A--GCAGCGGTGTA-------GAAAGGCGAAATGC----------CGCAGGCAGGACGAT 128
consensus_8718#5      -------------A-------GAAAGGCGAAATGC----------CGCAGGCAGGACGAT 30
consensus_8718#2      T-CACGGTTTTCTA-------TATTCTAACCATGCA-------TACTCCGTCTATGGGAA 244
consensus_8718#1      AGCGCGGCCACTCGCCTGCGTGGTGGTGGAGATGGGCTTCAGCTTCACGCACGTGGTGCC 319
                                                     ***                 *        

consensus_8718#0      GTCTGGGACTACCTTTTCAGCCCGGACTGCTGTCC--GGTGCA-----GTTTGCCGACA- 390
consensus_8718#3      GTCTGGGACTACCTTTTCAGCCCGGACTGCTGTCC--GGTGCA-----GTTTGCCGACA- 289
consensus_8718#4      ATTTCAGGATAACATC-CAGCACGCATTTCCCGCCCTACCGCATCGATGTTCGCATGGA- 186
consensus_8718#5      ATTTCAGGATAACATC-CAGCACGCATTTCCCCCCCTACCGCATCGATGTTCGCATGGA- 88
consensus_8718#2      CTTGAAGGATAACATC-CAGCACGCATTTCCCGCCCTACCGCATCGATGTTCGCATGGA- 302
consensus_8718#1      GTTCGTGAAGGGCTGCAAGGTGCGGGAAGCGATCC--GACGCATCGACGTCGGCGGGAAG 377
                       *    *     *      *  **     *   **     ***     **  **    * 

consensus_8718#0      -CGCCGCTCCTCATCACCGAGC-CGCTGTTC---AACTTCGGCTCGATCC-----AGGAA 440
consensus_8718#3      -CGCCGCTCCTCATCACCGAGC-CGCTGTTC---AACTTCGGCTCGATCC-----AGGAA 339
consensus_8718#4      -CGACTATGATCAACTTCAA---CATTATTCC--AACATCGACGGGATGT----TACACA 236
consensus_8718#5      -CGACTATGATCAACTTCAT---CATTATTCC--AACATCGACGGGGTTTA---CACACA 139
consensus_8718#2      -CGACTATAATCAACTTCAA---CATTATTCC--AACATCGACGGGATGT----TACACA 352
consensus_8718#1      GTGCTGACGAACCATTTGAAGGAAATCATTTCCTACCGGCAGCTGAACGTGATGGACGAA 437
                        *        *                **    * *  *  *            *   *

consensus_8718#0      GCGATGCTGGAGATCCTGTACGAAGAGTACGACTGCG--ATGCGGTA----TGCAA-ATC 493
consensus_8718#3      GCGATGCTGGAGATCCTGTACGAAGAGTACGACTGCG--ATGCGGTA----TGCAA-ATC 392
consensus_8718#4      CACGAGATGAGGGATGAGTAGCAGTAATACGGATGTGTGTTACTCTA----TACAG-GAA 291
consensus_8718#5      TACGAGTTGAGGGATGAGTAGCAGTAATACGGATGTGTGCTACTCTA----TACAG-GAA 194
consensus_8718#2      CACGAGATGAGGGATGAGTAGCAGTAATACGGATGTGTGTTACTCTA----TACAG-GAA 407
consensus_8718#1      TCGTACGTGATCAATCAGGTGAAGGAGGACAGCTGCTTCGTGTCGCAGAACTTCAACGAG 497
                             **        *    *  *  **   **     *     *    * **     

consensus_8718#0      GACGGCCA-TCGATTTGGC-GGCGTTCAACTACACGCACAGCGAGCAA-ACGGAACAGCC 550
consensus_8718#3      GAGG--CA-TCGATTTGGCCGGCGTTCAACTACACGCACAGCGAGCAACACGGAACAGCC 449
consensus_8718#4      GATGTGGAGCCTGTATCAGGATTGGTCACG-TTTTTCGTCACAAACTAAAATACACACTT 350
consensus_8718#5      GATGTGGAGCCTGTTTCAGGATTGGTTACGATTTTGCGTCACAAACTAAAATAAACAC-- 252
consensus_8718#2      GATGTGGAGCCTGTATCAGGATTGGTCACG-TTTTTCGTCACAAACTAAAATACACACTT 466
consensus_8718#1      GACATGCGGATAGCGCGCAAACGCATCCCGGACAATACGATCCTGCGGGAGTACGTGCTG 557
                      **                       *               *   *   *          

consensus_8718#0      G-GAG-GGCAAACGGCCACTCGCCTGCGTGGTGGTGG-AGATGGGCTT-CAGCTTCACGC 606
consensus_8718#3      GTGAGTGGCAAACGGC-ACTCGCCTGCGTGGTGGTGGCAGATGGGCTT-CAGCTTCACGC 507
consensus_8718#4      TCAATTTTCTACTAAAAAAAAGCGTGTCCGCTTACAATGAACAGAACA-CGGGGGGTGGG 409
consensus_8718#5      ---ACTTCTTTCGAAGACTC---------------------------------------- 269
consensus_8718#2      TCAATTTTCTACTAAACCATCGCGTGTCCGCTTACAATGAACAGAACA-CGGGGGGTGGT 525
consensus_8718#1      CCGGACTACACGCAGA-TACGGCGCGGATTTTTACGCAAACCGAACGAATCGGGTGGGGC 616
                                                                                  

consensus_8718#0      ACGTGGTGCCGTTCGTGAAGGGCTGCAAGGTGCGG---GAAGCGA---TTCGGCGCATCG 660
consensus_8718#3      ACGTGGTGCCGTTCGTGAAGGGCTGCCAGGTGCGG---GAAGCGA---TTCGGCGCATCG 561
consensus_8718#4      GGTTGAGGGGGGATGAGAAAATTTGAGAATTCAGTTCCGAACACA---ACAGACACACCA 466
consensus_8718#5      ------------------------------------------------------------
consensus_8718#2      GGTTGAGGGTGGATGAGAATATTTGAGAATTCAGTTCCGAACACA---ACAGACACACCA 582
consensus_8718#1      GGGCGATGGTGGAGAGGAGCTACAGACGGTGCGGCTCGGTAACGACGGTTCGTTATACCG 676
                                                                                  

consensus_8718#0      -ACGTCGGCGGGAAGGTGCTGACGAACCATCTG-GTGGAGAAGTACGAGAGCTAGCAGCG 718
consensus_8718#3      -ACGTCGGCGGGAAGGTGCTGACGAACCATCTG-AAGGA-AATCATCTCCTACGGCAGCT 618
consensus_8718#4      CACACTCACACACATAACATGAACACGCACACA-AACAGTACCGCGTTTTTGGGGGGGCC 525
consensus_8718#5      ------------------------------------------------------------
consensus_8718#2      CACACTCACACACATAACATGAACACGCACACA-AACAGTACCGCGTTTTTGGGGTGGCC 641
consensus_8718#1      GAGATACTGTTCCACCCGTCGGACGTCGGGATACAGCAGATGGGCGTACCGGAAGCGATC 736
                                                                                  

consensus_8718#0      G-TGTAGAAAGGCGAAATGCCGCAGAGGGACCGATATTTCAGGATAACATCCAGCACGCA 777
consensus_8718#3      G-AACCGTGATGGAC--------------------------------------------- 632
consensus_8718#4      GCGGTGGGGAGGGGATTTTTGCCGCCCTAGAGATTAGTAACAC----------------- 568
consensus_8718#5      ------------------------------------------------------------
consensus_8718#2      GCTGTTGGGATGGGAT-------------------------------------------- 657
consensus_8718#1      GTGGATGCGATTAATCTGTGCCCGGAGGAGACACGGCCGCATCTGTTCGCGAACATTGTC 796
                                                                                  

consensus_8718#0      TTTCCCGCCCTACCGCATCGATGTTCGCATGGACGACTATGATCAACTTCAACATTATTC 837
consensus_8718#3      ------------------------------------------------------------
consensus_8718#4      ------------------------------------------------------------
consensus_8718#5      ------------------------------------------------------------
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      GTGTGTTGTGGATGTGCCCTGTTTCCCGGCATGCAGTCGCGCGTGGAACGGGACGTCCGA 856
                                                                                  

consensus_8718#0      CAACATCGACGGGATGTTACACACACGAGATGAGGGATGAGTAGCAGTTATACGGATGTG 897
consensus_8718#3      ------------------------------------------------------------
consensus_8718#4      ------------------------------------------------------------
consensus_8718#5      ------------------------------------------------------------
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      G----------------------------------------------------------- 857
                                                                                  

consensus_8718#0      TGTTACTCTATACAGGAAGATGTGGAGCCTGTATCAGGATTGGTCACGTTTTTCGTCACA 957
consensus_8718#3      ------------------------------------------------------------
consensus_8718#4      ------------------------------------------------------------
consensus_8718#5      ------------------------------------------------------------
consensus_8718#2      ------------------------------------------------------------
consensus_8718#1      ------------------------------------------------------------
                                                                                  

consensus_8718#0      AACTAAAATACACACTTTCAGCCCTTCTTA 987
consensus_8718#3      ------------------------------
consensus_8718#4      ------------------------------
consensus_8718#5      ------------------------------
consensus_8718#2      ------------------------------
consensus_8718#1      ------------------------------
                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)