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Anopheles gambiae
cluster # 8726 cluster # 8726       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8726#0 length = 1261 sequences # 10  
consensus_8726#1 length = 870 sequences # 1  
consensus_8726#2 length = 628 sequences # 1  

consensusID : consensus_8726#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1261
fasta sequence
                              [GGATTTTGTTTACTTTTATAGTACTATTTCTTTTCTGCTTGCGTTCGTGAAGAGATAACGATTTTCCGAAAGCACCATGCACATATATCTCGTCTTCTTACGCGGCGAAATATTCGTTATTGCTCGAAAAAAGACGATCCGGCCGGTTCTGGCAGCGATTCCCATCGGGAGTGACGGCACGGAATCAACAATACACGCCTCCACCATCATCACCAACGGCAACTTCCGGCGCTTAATCCTTGCTCTCCAGAGCGGAAGCACCGGAAATAATTTCAATCAGCTCACGGGTAATGACCGCCTGTCTGGTACGGTTGAAGGTCAGCGTCAGCTTGTCAATCATCTCGCCGGCGTTCTTGGACGCGTTGTCCATGGCCGTCATACGGGAGGACTGTTCGGAGCAGGCGCCCTCCTTCATCGTGTAGAACAGCAGCGAGGGGAGCGAGAACTCCAGGTAGCTCTGGATCACTTCCGAGTCGAGCGAATCGTACACCGGCAGCGACTTGAGCGAGAAGATCGGAATGTCCGCCACCTGGTACGACACGACCGACTTGAACTTGTTGTAGATGATCTTGCCATCGGTGTACTCGTAGCCG-AGGTTCAGGATGGCATTGCACAGCTTGGCCGCATCCAGGAAGGTCGGCGGCAGACGGCCGATC-TCGTTCGCGACCATCTCGATGTTCTTGCCGTACAGACGCGACAGGATGGCGCGCGACTTGTCGCCGACGCAGATCACCTTGATGTTCGGGTCGGTGGCGAGCTCGCCGCGAATGTAACGGGCAACGCCGGTATGCACCGCACCGCACAGACCACGGTC-CGACGTGATGGCAATGTACAGCTTCTTGGAGTCTTCCTCCTTCGGCGCGACTTCGGCCTTCTCGTAGAACTGCTGCGCACCGACACCGTACGGTCTGGCCTGCTTCAGATCACGCTCAGCACGGGAATACTTGGCGGCGGACACCATCTTCATGGATTGGGTGATCTTCTGGATGTTCTTGACCGACTTCAGACGGATCGAAATGGCCTTCAGCGTGGCCATGCCACGGTTCTGCTGACCAAGGCATAGCTCAGCTGGCACCTGCGACAGCACGGGCACGACGGACTTGAACATG---GCTGCGCTATTGGCGATTTCAACAGGAAAGTCGACGAATAAAGGTGGCCTTTTTCGGTCGTTCGGTGCAAAAGCGGATCAGAATTTTCTTATCCGATTCTACGGGTGTCAAAA-CCCACGCGTCCGCGGACGCGTCCGCCCACGCGTCCGCGG]

[+] EMBL CNS08SCU             [GGATTTTGTTTACTTTTATAGTACTATTTCTTTTCTGCTTGCGTTCGTGAAGAGATAACGATTTTCCGAAAGCACCATGCACATATATCTCGTCTTCTTACGCGGCGAAATATTCGTTATTGCTCGAAAAAAGACGATCCGGCCGGTTCTGGCAGCGATTCCCATCGGGAGTGACGGCACGGAATCAACAATACACGCCTCCACCATCATCACCAACGGCAACTTCCGGCGCTTAATCCTTGCTCTCCAGAGCGGAAGCACCGGAAATAATTTCAATCAGCTCACGGGTAATGACCGCCTGTCTGGTACGGTTGAAGGTCAGCGTCA CTTGTCAATCATCTCGCCGGCGTTCTTGGACGCGTTGTCCATGGCCGTCATACGGGAGGACTGTTCGGAGCAGGCGCCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CNS08SEQ             [  ATTTTGTTTACTTTTATAGTACTATTTCTTTTCTGCTTGCGTTCGTGAAGAGATAACGATTTTCCGAAAGCACCATGCACATATATCTCGTCTTCTTACGCGGCGAAATATTCGTTATTGCTCGAAAAAAGACGATCCGGCCGGTTCTGGCAGCGATTCCCATCGGGAGTTACGGCACGGAATCAACAATACACGCCTCCACCATCATCACCAACGGCAACTTCCGGCGCTTAATCCTTGCTCTCCAGAGCGGAAGCACCGGAAATAATTTCAATCAGCTCACGGGTAATGACCGCCTGTCTGGTACGGTTGAAGGTCAGCGTCAGCTTGTCAATCATCTCGCCGGCGTTCTTGGACGCGTTGTCCATGGCCGTCATACTGGAGGACTGTTCGGAGCAGGCGCCCTCCTTCATCGTGTAGAACAGCAGCGAGGGGAGCGAGAACTCCAGGTAGCTCTGGATCACTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BX607857             [                                                                                                                                                                                                                                                    CTCCAGAGCGGAAGCACCGGAAATAATTTCAATCAGCTCACGGGTAATGACCGCCTGTCTGGTACGGTTGAAGGTCAGCGTCAGCTTGTCAATCATCTCGCCGGCGTTCTTGGACGCGTTGTCCATGGCCGTCATACGGGAGGACTGTTCGGAGCAGGCGCCCTCCTTCATCGTGTAGAACAGCAGCGAGGCGAGCGAGAACTCCAGGTAGCTCTGGATCACTTCCGAGTCGAGCGAATCGTACACCGGCAGCGACTTGAGCGAGAAGATCGGAATGTCCGCCACCTGGTACGACACGACCGACTTGAACTTGTTGTAGATGATCTTGCCATCGGTGTACTCGTAGCCG AGGTTCAGGATGGCATTGCACAGCTTGGCCGCATCCAGGAAGGTCGGCGGCAGACGGCCGATC TCGTTCGCGACCATCTCGATGTTCTTGCCGTACAGACGCGACAGGATGGCGCGCGACTTGTCGCCGACGCAGATCACCTTGATGTTCGGGTCGGTGGCGAGCTCGCCGCGAATGTAACGGGCAACGCCGGTATGCACCGCACCGCACAGACCAAGGTC CGACGTGATGGCAATGTACAGCTTCTTGGAGTCTTCCTCCTTCGGCGCGACTTCGGCCTTCTCGTAGAACTGCTGCGCACCGACACCGTACGGTCTGGCCTGCTTCAGATCACGCTCAGCACGGGAATACTTGGCGGCGGACACCATCTTCATGGATTGGGTGATCTTCTGGATGTTCTTGACCGACTTCAGACGGATCGAAATGGCCTTCAG                                                                                                                                                                                                                                              ]
[-] EMBL BM577209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CCTGGTACGACACGACCGACTTGAACTTGTTGTAGATGATCTTGCCATCGGTGTACTCGTAGCCG AGGTTCAGGATGGCATTGCACAGCTTGGCCGCATCCAGGAAGGTCGGCGGCAGACGGCCGATC TCGTTCGCGACCATCTCGATGTTCTTGCCGTACAGACGCGACAGGATGGCGCGCGACTTGTCGCCGACGCAGATCACCTTGATGTTCGGGTCGGTGGCGAGCTCGCCGCGAATGTAACGGGCAACGCCGGTATGCACCGCACCGCACAGACCACGGTC CGACGTGATGGCAATGTACAGCTTCTTGGAGTCTTCCTCCTTCGGCGCGACTTCGGCCTTCTCGTAGAACTGCTGCGCACCGACACCGTACGGTCTGGCCTGCTTCAGATCACGCTCAGCACGGGAATACTTGGCGGCGGACACCATCTTCATGGATTGGGTGATCTTCTGGATGTTCTTGACCGACTTCAGACGGATCGAAATGGCCTTCAGCGTGGCCATGCCACGGTTCTGCTGACCAAGGCATAGCTCAGCTGGCACCTGCGACAGCACGGGCACGACGGACTTGAACATG   GCTGCGCTATTGGCGATTTCAACAGGAAAGTCGACGAATAAAGGTGGCCTTTTTCGGTCGTTCGGTGCAAAAGCGGATCAGAATTTTCTTATCCGATTCTACGGGTGTCAAAAGCGGACGCGTGGGCGG                        ]
[-] EMBL BM655946             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATGATCTTGCCATCGGTGTACTCGTAGCCG AGGTTCAGGATGGCATTGCACAGCTTGGCCGCATCCAGGAAGGTCGGCGGCAGACGGCCGATC TCGTTCGCGACCATCTCGATGTTCTTGCCGTACAGACGCGACAGGATGGCGCGCGACTTGTCGCCGACGCAGATCACCTTGATGTTCGGGTCGGTGGCGAGCTCGCCGCGAATGTAACGGGCAACGCCGGTATGCACCGCACCGCACAGACCACGGTC CGACGTGATGGCAATGTACAGCTTCTTGGAGTCTTCCTCCTTCGGCGCGACTTCGGCCTTCTCGTAGAACTGCTGCGCACCGACACCGTACGGTCTGGCCTGCTTCAGATCACGCTCAGCACGGGAATACTTGGCGGCGGACACCATCTTCATGGATTGGGTGATCTTCTGGATGTTCTTGACCGACTTCAGACGGATCGAAATGGCCTTCAGCGTGGCCATGCCACGGTTCTGCTGACCAAGGCATAGCTCAGCTGGCACCTGCGACAGCACGGGCACGACGGACTTGAACATGGCTGCTGCGCTATTGGCGATTTCAACAGGAAAGTCGACGAATAAAGGTGGCCTTTTTCGGTCGTTCGGTGCAAAAGCGGATCAGAATTTTCTTATCCGATTCTACGGGTGTCAAAA CCCACGCGTCCGCGG                        ]
[-] EMBL BM645979             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCGGTGTACTCGTAGCCGAAGGTTCAGGATGGCATTGCACAGCTTGGCCGCATCCAGGAAGGTCGGCGGCAGACGGCCGATCTTCGTTCGCGACCATCTCGATGTTCTTGCCGTACAGACGCGACAGGATGGCGCGCGACTTGTCGCCGACGCAGATCACCTTGATGTTCGGGTCGGTGGCGAGCTCGCCGCGAATGTAACGGGCAACGCCGGTATGCACCGCACCGCACAGACCACGGTC CGACGTGATGGCAATGTACAGCTTCTTGGAGTCTTCCTCCTTCGGCGCGACTTCGGCCTTCTCGTAGAACTGCTGCGCACCGACACCGTACGGTCTGGCCTGCTTCAGATCACGCTCAGCACGGGAATACTTGGCGGCGGACACCATCTTCATGGATTGGGTGATCTTCTGGATGTTCTTGACCGACTTCAGACGGATCGAAATGGCCTTCAGCGTGGCCATGCCACGGTTCTGCTGACCAAGGCATAGCTCAGCTGGCACCTGCGACAGCACGGGCACGACGGACTTGAACATGGCTGCTGCGCTATTGGCGATTTCAACAGGAAAGTCGACGAATAAAGGTGGCCTTTTTCGGTCGTTCGGTGCAAAAGCGGATCAGAATTTTCTTATCCGATTCTACGGGTGTC  AA CCCACGCGTCCGCGG                        ]
[-] EMBL BM620704             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGTACTCGTAGCCG AGGTTCAGGATGGCATTGCACAGCTTGGCCGCATCCAGGAAGGTCGGCGGCAGACGGCCGATC TCGTTCGCGACCATCTCGATGTTCTTGCCGTACAGACGCGACAGGATGGCGCGCGACTTGTCGCCGACGCAGATCACCTTGATGTTCGGGTCGGTGGCGAGCTCGCCGCGAATGTAACGGGCAACGCCGGTATGCACCGCACCGCACAGACCACGGTC CGACGTGATGGCAATGTACAGCTTCTTGGAGTCTTCCTCCTTCGGCGCGACTTCGGCCTTCTCGTAGAACTGCTGCGCACCGACACCGTACGGTCTGGCCTGCTTCAGATCACGCTCAGCACGGGAATACTTGGCGGCGGACACCATCTTCATGGATTGGGTGATCTTCTGGATGTTCTTGACCGACTTCAGACGGATCGAAATGGCCTTCAGCGTGGCCATGCCACGGTTCTGCTGACCAAGGCATAGCTCAGCTGGCACCTGCGACAGCACGGGCACGACGGACTTGAACATGGCTGCTGCGCTATTGGCGATTTCAACAGGAAAGTCGACGAATAAAGGTGGCCTTTTTCGGTCGTTCGGTGCAAAAGCGGATCAGAATTTTCTTATCCGATTCTACGGGTGTCAAAA CCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGG]
[-] EMBL BM615099             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCCAGGAAGGTCGGCGGCAGACGGCCGATCTTCGTTCGCGACCATCTCGATGTTCTTGCCGTACAGACGCGACAGGATGGCGCGCGACTTGTCGCCGACGCAGATCACCTTGATGTTCGGGTCGGTGGCGAGCTCGCCGCGAATGTAACGGGCAACGCCGGTATGCACCGCACCGCACAGACCACGGTC CGACGTGATGGCAATGTACAGCTTCTTGGAGTCTTCCTCCTTCGGCGCGACTTCGGCCTTCTCGTAGAACTGCTGCGCACCGACACCGTACGGTCTGGCCTGCTTCAGATCACGCTCAGCACGGGAATACTTGGCGGCGGACACCATCTTCATGGATTGGGTGATCTTCTGGATGTTCTTGACCGACTTCAGACGGATCGAAATGGCCTTCAGCGTGGCCATGCCACGGTTCTGCTGACCAAGGCATAGCTCAGCTGGCACCTGCGACAGCACGGGCACGACGGACTTGAACATGGCTGCTGCGCTATTGGCGATTTCAACAGGAAAGTCGACGAATAAAGGTGGCCTTTTTCGGTCGTTCGGTGCAAAAGCGGATCAGAATTTTCTTATCCGATTCTACGGGTGTCAAAAGCCCACGCGTCCGCCCACGCGTCCGCgg            ]
[-] EMBL BM628190             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGATC TCGTTCGCGACCATCTCGATGTTCTTGCCGTACAGACGCGACAGGATGGCGCGCGACTTGTCGCCGACGCAGATCACCTTGATGTTCGGGTCGGTGGCGAGCTCACCGCGAATGTAACGGGCAACGCCGGTATGCACCGCACCGCACAGACCACGGTCTCGACGTGATGGCAATGTACAGCTTCTTGGAGTCTTACTCCTTCGGCGCGACTTCGGCCTTCTCGTAGAACTGCTGCGCACCGACACCGTACGGTCTGGCCTGCTTCAGATCACGCTCAGCACGGGAATACTTGGCGGCGGACACCATCTTCATGGATTGGGTGATCTTCTGGATGTTCTTGACCGACTTCAGACGGATCGAAATGGCCTTCAGCGTGGCCATGCCACGGTTCTGCTGACCAAGGCATAGCTCAGCTGGCACCTGCGACAGCACGGGCACGACGGACTTGAACATG   GCTGCGCTATTGGCGATTTCAACAGGAAAGTCGACGAATAAAGGTGGCCTTTTTCGGTCGTTCGGTGCAAAAGCGGATCAGAATTTTCTCATCCGATTCTACGGGTGTC   A CGGACGCGTGGGCGG                        ]
[-] EMBL BM625252             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGATCACCTTGATGTTCGGGTCGGTGGCGAGCTCGCCGCGAATGTAACGGGCAACGCCGGTATGCACCGCACCGCACAGACCACGGTC CGACGTGATGGCAATGTACAGCTTCTTGGAGTCTTCCTCCTTCGGCGCGACTTCGGCCTTCTCGTAGAACTGCTGCGCACCGACACCGTACGGTCTGGCCTGCTTCAGATCACGCTCAGCACGGGAATACTTGGCGGCGGACACCATCTTCATGGATTGGGTGATCTTCTGGATGTTCTTGACCGACTTCAGACGGATCGAAATGGCCTTCAGCGTGGCCATGCCACGGTTCTGCTGACCAAGGCATAGCTCAGCTGGCACCTGCGACAGCACGGGCACGACGGACTTGAACATG   GCTGCGCTATTGGCGATTTCAACAGGAAAGTCGACGAATAAAGGTGGCCTTTTTCGGTCGTTCGGTGCAAAAGCGGATCAGAATTTTCTTATCCGATTCTACGGGTGTC AAA CCCACGCGTCCGCGG                        ]


>consensus_8726#0 GGATTTTGTTTACTTTTATAGTACTATTTCTTTTCTGCTTGCGTTCGTGAAGAGATAACG ATTTTCCGAAAGCACCATGCACATATATCTCGTCTTCTTACGCGGCGAAATATTCGTTAT TGCTCGAAAAAAGACGATCCGGCCGGTTCTGGCAGCGATTCCCATCGGGAGTGACGGCAC GGAATCAACAATACACGCCTCCACCATCATCACCAACGGCAACTTCCGGCGCTTAATCCT TGCTCTCCAGAGCGGAAGCACCGGAAATAATTTCAATCAGCTCACGGGTAATGACCGCCT GTCTGGTACGGTTGAAGGTCAGCGTCAGCTTGTCAATCATCTCGCCGGCGTTCTTGGACG CGTTGTCCATGGCCGTCATACGGGAGGACTGTTCGGAGCAGGCGCCCTCCTTCATCGTGT AGAACAGCAGCGAGGGGAGCGAGAACTCCAGGTAGCTCTGGATCACTTCCGAGTCGAGCG AATCGTACACCGGCAGCGACTTGAGCGAGAAGATCGGAATGTCCGCCACCTGGTACGACA CGACCGACTTGAACTTGTTGTAGATGATCTTGCCATCGGTGTACTCGTAGCCGAGGTTCA GGATGGCATTGCACAGCTTGGCCGCATCCAGGAAGGTCGGCGGCAGACGGCCGATCTCGT TCGCGACCATCTCGATGTTCTTGCCGTACAGACGCGACAGGATGGCGCGCGACTTGTCGC CGACGCAGATCACCTTGATGTTCGGGTCGGTGGCGAGCTCGCCGCGAATGTAACGGGCAA CGCCGGTATGCACCGCACCGCACAGACCACGGTCCGACGTGATGGCAATGTACAGCTTCT TGGAGTCTTCCTCCTTCGGCGCGACTTCGGCCTTCTCGTAGAACTGCTGCGCACCGACAC CGTACGGTCTGGCCTGCTTCAGATCACGCTCAGCACGGGAATACTTGGCGGCGGACACCA TCTTCATGGATTGGGTGATCTTCTGGATGTTCTTGACCGACTTCAGACGGATCGAAATGG CCTTCAGCGTGGCCATGCCACGGTTCTGCTGACCAAGGCATAGCTCAGCTGGCACCTGCG ACAGCACGGGCACGACGGACTTGAACATGGCTGCGCTATTGGCGATTTCAACAGGAAAGT CGACGAATAAAGGTGGCCTTTTTCGGTCGTTCGGTGCAAAAGCGGATCAGAATTTTCTTA TCCGATTCTACGGGTGTCAAAACCCACGCGTCCGCGGACGCGTCCGCCCACGCGTCCGCG G



consensusID : consensus_8726#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 870
fasta sequence
                              [CGCAGAGTCTAGTGAACACACATTTTGTGTATCATTACATTAACTTTTAAGCCCCTTTAAGGCGTCGAAATGGGACGCGTCATTCGCGCGCAGTACAGAGGTGCCGGATCCGTGTTCCGGGCCCACACCAAGAAGCGTGGTGCCCCGTTGGCGGTCGTCAACTTCCGCGACCCGTACCGCTTCCGCCTGAGCAAGCAGCTGTTCATCGCGGCCGAGGGCATGTACACCGGCCAGTTCGTGTACTGTGGACGGCGCGCCCAGCTGCAGATCGGTAACGTGCTGCCGATCGGTCTGATGCCGGAAGGTACGATTGTGTGCAATCTGGAGGAGAAGACCGGCGACCGTGGCAAGCTGGCCCGCACGTCGGGCAACTACGCCTCGGTCATTGCGCACAACCCGGACACCAAGCGTACGCGCGTGAAGCTGCCGTCCGGTGCGAAGAAGGTGCTGCCGTCGGCGAACCGTGCCATGATCGGTATCGTGGCCGGCGGTGGCCGTATCGACAAGCCCATCCTGAAGGCGGGCCGTGCGTACCACAAGTACAAGGTGAAGCGCAACTGCTGGCCGAAGTGCGCGGTGTGGCGATGAACCCCGTCGAGCATCCGCACGGTGGTGGTAACCATCAGCACATCGGTAAGGCGTCGACCGTCAAGCGCGGCACGCCCCCGGGTCGCAAGGTCGGTCTCATCGCTGCCCGTCGTACCGGTCGTATCCGTGGTGGCAAGGGCGACGAGAAGTTCAAGGAGAAGGAGAAGAAGTAAGCAGCCGAGTGTCGTCGCTGTGCTGTTTATGTTCTGTGGTGGTGTTTATACTTTTTCTTCCGGCACCCGACGTCCATCTGTACGGTGTGTGGAAGAGAGGAGGGAGGAA]

[+] EMBL CNS08PEW             [CGCAGAGTCTAGTGAACACACATTTTGTGTATCATTACATTAACTTTTAAGCCCCTTTAAGGCGTCGAAATGGGACGCGTCATTCGCGCGCAGTACAGAGGTGCCGGATCCGTGTTCCGGGCCCACACCAAGAAGCGTGGTGCCCCGTTGGCGGTCGTCAACTTCCGCGACCCGTACCGCTTCCGCCTGAGCAAGCAGCTGTTCATCGCGGCCGAGGGCATGTACACCGGCCAGTTCGTGTACTGTGGACGGCGCGCCCAGCTGCAGATCGGTAACGTGCTGCCGATCGGTCTGATGCCGGAAGGTACGATTGTGTGCAATCTGGAGGAGAAGACCGGCGACCGTGGCAAGCTGGCCCGCACGTCGGGCAACTACGCCTCGGTCATTGCGCACAACCCGGACACCAAGCGTACGCGCGTGAAGCTGCCGTCCGGTGCGAAGAAGGTGCTGCCGTCGGCGAACCGTGCCATGATCGGTATCGTGGCCGGCGGTGGCCGTATCGACAAGCCCATCCTGAAGGCGGGCCGTGCGTACCACAAGTACAAGGTGAAGCGCAACTGCTGGCCGAAGTGCGCGGTGTGGCGATGAACCCCGTCGAGCATCCGCACGGTGGTGGTAACCATCAGCACATCGGTAAGGCGTCGACCGTCAAGCGCGGCACGCCCCCGGGTCGCAAGGTCGGTCTCATCGCTGCCCGTCGTACCGGTCGTATCCGTGGTGGCAAGGGCGACGAGAAGTTCAAGGAGAAGGAGAAGAAGTAAGCAGCCGAGTGTCGTCGCTGTGCTGTTTATGTTCTGTGGTGGTGTTTATACTTTTTCTTCCGGCACCCGACGTCCATCTGTACGGTGTGTGGAAGAGAGGAGGGAGGAA]


>consensus_8726#1 CGCAGAGTCTAGTGAACACACATTTTGTGTATCATTACATTAACTTTTAAGCCCCTTTAA GGCGTCGAAATGGGACGCGTCATTCGCGCGCAGTACAGAGGTGCCGGATCCGTGTTCCGG GCCCACACCAAGAAGCGTGGTGCCCCGTTGGCGGTCGTCAACTTCCGCGACCCGTACCGC TTCCGCCTGAGCAAGCAGCTGTTCATCGCGGCCGAGGGCATGTACACCGGCCAGTTCGTG TACTGTGGACGGCGCGCCCAGCTGCAGATCGGTAACGTGCTGCCGATCGGTCTGATGCCG GAAGGTACGATTGTGTGCAATCTGGAGGAGAAGACCGGCGACCGTGGCAAGCTGGCCCGC ACGTCGGGCAACTACGCCTCGGTCATTGCGCACAACCCGGACACCAAGCGTACGCGCGTG AAGCTGCCGTCCGGTGCGAAGAAGGTGCTGCCGTCGGCGAACCGTGCCATGATCGGTATC GTGGCCGGCGGTGGCCGTATCGACAAGCCCATCCTGAAGGCGGGCCGTGCGTACCACAAG TACAAGGTGAAGCGCAACTGCTGGCCGAAGTGCGCGGTGTGGCGATGAACCCCGTCGAGC ATCCGCACGGTGGTGGTAACCATCAGCACATCGGTAAGGCGTCGACCGTCAAGCGCGGCA CGCCCCCGGGTCGCAAGGTCGGTCTCATCGCTGCCCGTCGTACCGGTCGTATCCGTGGTG GCAAGGGCGACGAGAAGTTCAAGGAGAAGGAGAAGAAGTAAGCAGCCGAGTGTCGTCGCT GTGCTGTTTATGTTCTGTGGTGGTGTTTATACTTTTTCTTCCGGCACCCGACGTCCATCT GTACGGTGTGTGGAAGAGAGGAGGGAGGAA



consensusID : consensus_8726#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence
                              [CCGCCCACGCGTCCGATTTTTATACGCAAATCTTTACTGTACATTTTCGTGTGTTGTAAATTTCCCGACAAAAATTTGCGAAAGGAAATCGGACGCGTAATCCCTTTGTCGCGTTGTTTTTAAAGAAGCAAAATAGCGTACGGAAAGTGAAAAATAATTACAGTGATACCTATTTTACCTTCCTCCTGCTATCCAAGTATCAATAGTTCGTGATTGTGTGCGCGCGCGAGTGCTATGTGTTTGTGTGTGGTGTATAGGTTAAGCTGAACATAATTTATCTAATTGAAGGTTCGACAGGATAAAAAAGAAAATATCTCGAGGTTGAAAGAATACTTAACAGCGAATCACAGGATAGCTACTTCCTACGAGTTTTCCCGGAAGTAGATGCAGGAAACATCATCTACCAGTACACCAGAAGCTACAGCCGGAGAAGAAGAAGCGGACAGGGCGACAGGATGTCACGCAATAAAGACAAGTACGAAAGCAACAACCCCCGGAGACAGCAAACGTTTCTGACCGCCGAGGATATTGCTGCCGGGAAGAAGACGTGCTGGCATGGCATTGAGATAACGGGCAGTGTGCGGAATCTTAGTCCGACGCTCTGGAAGTTTGAGCATCTAACGGCACT]

[+] EMBL BM604845             [CCGCCCACGCGTCCGATTTTTATACGCAAATCTTTACTGTACATTTTCGTGTGTTGTAAATTTCCCGACAAAAATTTGCGAAAGGAAATCGGACGCGTAATCCCTTTGTCGCGTTGTTTTTAAAGAAGCAAAATAGCGTACGGAAAGTGAAAAATAATTACAGTGATACCTATTTTACCTTCCTCCTGCTATCCAAGTATCAATAGTTCGTGATTGTGTGCGCGCGCGAGTGCTATGTGTTTGTGTGTGGTGTATAGGTTAAGCTGAACATAATTTATCTAATTGAAGGTTCGACAGGATAAAAAAGAAAATATCTCGAGGTTGAAAGAATACTTAACAGCGAATCACAGGATAGCTACTTCCTACGAGTTTTCCCGGAAGTAGATGCAGGAAACATCATCTACCAGTACACCAGAAGCTACAGCCGGAGAAGAAGAAGCGGACAGGGCGACAGGATGTCACGCAATAAAGACAAGTACGAAAGCAACAACCCCCGGAGACAGCAAACGTTTCTGACCGCCGAGGATATTGCTGCCGGGAAGAAGACGTGCTGGCATGGCATTGAGATAACGGGCAGTGTGCGGAATCTTAGTCCGACGCTCTGGAAGTTTGAGCATCTAACGGCACT]


>consensus_8726#2 CCGCCCACGCGTCCGATTTTTATACGCAAATCTTTACTGTACATTTTCGTGTGTTGTAAA TTTCCCGACAAAAATTTGCGAAAGGAAATCGGACGCGTAATCCCTTTGTCGCGTTGTTTT TAAAGAAGCAAAATAGCGTACGGAAAGTGAAAAATAATTACAGTGATACCTATTTTACCT TCCTCCTGCTATCCAAGTATCAATAGTTCGTGATTGTGTGCGCGCGCGAGTGCTATGTGT TTGTGTGTGGTGTATAGGTTAAGCTGAACATAATTTATCTAATTGAAGGTTCGACAGGAT AAAAAAGAAAATATCTCGAGGTTGAAAGAATACTTAACAGCGAATCACAGGATAGCTACT TCCTACGAGTTTTCCCGGAAGTAGATGCAGGAAACATCATCTACCAGTACACCAGAAGCT ACAGCCGGAGAAGAAGAAGCGGACAGGGCGACAGGATGTCACGCAATAAAGACAAGTACG AAAGCAACAACCCCCGGAGACAGCAAACGTTTCTGACCGCCGAGGATATTGCTGCCGGGA AGAAGACGTGCTGGCATGGCATTGAGATAACGGGCAGTGTGCGGAATCTTAGTCCGACGC TCTGGAAGTTTGAGCATCTAACGGCACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8726#1      ------------------------------------------------------------
consensus_8726#0      GGATTTTGTTTACTTTTATAGTACTATTTCTTTTCTGCTTGCGTTCGTGAAGAGATAACG 60
consensus_8726#2      ------------------------------------------------------------
                                                                                  

consensus_8726#1      ------------------------------------------------------------
consensus_8726#0      ATTTTCCGAAAGCACCATGCACATATATCTCGTCTTCTTACGCGGCGAAATATTCGTTAT 120
consensus_8726#2      ------------------------------------------------------------
                                                                                  

consensus_8726#1      ---------------------------------------------------------CGC 3
consensus_8726#0      TGCTCGAAAAAAGACGATCCGGCCGGTTCTGGCAGCGATTCCCATCGGGAGTGACGGCAC 180
consensus_8726#2      ------------------------------------------------------------
                                                                                  

consensus_8726#1      AGAGTCTAGTGAACACACATTTTGTGT-ATCATTA-CATTAACTT-------TTAAGCCC 54
consensus_8726#0      GGAATCAACAATACACGCCTCCACCATCATCACCAACGGCAACTTCCGGCGCTTAATCCT 240
consensus_8726#2      --------CCGCCCACGCGTCCGATTT--TTAT--ACGCAAATCT-------TTA--CTG 39
                                   *** * *      *  * *    *   **  *       ***  *  

consensus_8726#1      ----CTTTAAGGCG-------TCGAAATGGGACG-CGTCA-TTCGCGCGCAGTACAGAGG 101
consensus_8726#0      TGCTCTCCAGAGCGGAAGCACCGGAAATAATTTC-AATCAGCTCACGGGTAATGACCGCC 299
consensus_8726#2      TACATTTTCGTGTG------TTGTAAATTTCCCGACAAAAATTTGCGAAAGGAAATCGGA 93
                           *     * *          ****           *  *  **             

consensus_8726#1      TGCCGGATCCGTGTTCCGGGCCCACACCAA-GAAGCGTGGTGCCCCGTTGGCGGTCGTCA 160
consensus_8726#0      TGTCTGGTACG-GTTGAAGGTCAGCGTCAG-CTTGTCAATCATCTCGCCGGCGTTCTTGG 357
consensus_8726#2      CGCGTAATCCCTTTGTCGCGTTGTTTTTAAAGAAGCAAAATAGCGTACGGAAAGTGAAAA 153
                       *     * *   *     *        *     *        *     *    *     

consensus_8726#1      ACT------TCCGCGACCCGTACCGCTTCCGCCTG--AGCA-AGCAGCTGTTCATCGCGG 211
consensus_8726#0      ACGCGT-TGTCCATGGCCGTCATACGGGAGGACTG--TTCGGAGCAGGCGCCCTCCTTCA 414
consensus_8726#2      ATAATTACAGTGATACCTATTTTACCTTCCTCCTGCTATCCAAGTATCAATAGTTCGTGA 213
                      *               *               ***    *  ** *         *    

consensus_8726#1      CCGAGGGCATGTACACCGGCCAGTTCGTGTACTGTGGACGGCGC--GCCCAGCTGCAGAT 269
consensus_8726#0      TCGTGTAGAACAGCAGCGAGGGGAGCGAGAACTCCAGGTAGCTCTGGATCACTTCCGAGT 474
consensus_8726#2      TTGTGTGCGCGCGC---GAGTGCTATGTGT-TTGTGTGTGGTGT---ATAGGTT--AAGC 264
                        * *        *   *        * *   *       *            *      

consensus_8726#1      CG---GTAACGTGCTGCCG-ATCGGTCTGATGCCGGAAGGTACGAT-TGTGTGCAATCTG 324
consensus_8726#0      CGAGCGAATCGTACACCGGCAGCGACTTGA-GCGAGAAGATCGGAA-TGTCCGCCACCTG 532
consensus_8726#2      TGAACATAATTTATCTAATTGAAGGTTCGACAGGATAAAAAAGAAAATATCTCGAGGTTG 324
                       *     *   *           *    **      **      *  * *        **

consensus_8726#1      G-AGGAGAAG-ACCGGC--GACCGTGGCA-AGCTGGCCCGCACGTCGG-------GCAAC 372
consensus_8726#0      GTACGACACG-ACCGACTTGAACTTGTTGTAGATGATCTTGCCATCGGTGTACTCGTAGC 591
consensus_8726#2      AAAGAATACTTAACAGCG-AATCACAGGATAGCTACTTCCTACG--AGTTTTCCCGGAAG 381
                        *  * *   * *  *   * *       ** *        *    *       * *  

consensus_8726#1      TACGCCTCGG--TCATTGCGCACAACCCGGACAC---CAAGCGTACGCGCGTGAAGCTGC 427
consensus_8726#0      CGAGGTTCAGGATGGCATTGCACAGCTTGGCCGCATCCAGGAAGGTCGGCGGCAGACGGC 651
consensus_8726#2      TAGATGCAGGAAACATCAT---CTACCAGTACAC---CAGAAGCTACAGCCGGAGAAGAA 435
                               *            *  *  *  * *   **         **   *      

consensus_8726#1      CG-TCCGGT--GCGAAGAAGGTGCTGCCGTCGGCGAAC---CGTGCCATGATCG-----G 476
consensus_8726#0      CGATCTCGTTCGCGACCATCTCGATGTTCTTGCCGTACAGACGCGACAGGATGGCGCGCG 711
consensus_8726#2      GAAGCGGACAGGGCGACAGGATGTCACGCAATAAAGACAAGTACGAAAGCAACA------ 489
                          *      *     *    *             **      *  *  *         

consensus_8726#1      TATCGTGGCCGGCGGTGGCCGTATC-GACAAGCCCATC--CTGAAGGCGGGCCGTGCGTA 533
consensus_8726#0      ACTTGTCGCCGACGCAGATCACCTT-GATGTTCGGGTCGGTGGCGAGCTCGCCGCGAATG 770
consensus_8726#2      -ACCCCCGGAGACAGCAAACGTTTCTGACCGCCGAGGATATTGCTGCCGGGAAGAAGACG 548
                             *  * *      *   *  **    *         *    *  *  *      

consensus_8726#1      CCACAA-GTA----CAAGGTGAAGCGCAAC-TGCTGG-CCGAAGTGCGCGGTG-TGGCGA 585
consensus_8726#0      TAACGG-GCAACGCCGGTATGCACCGCACCGCACAGA-CCACGGTCCGACGTGATGGCAA 828
consensus_8726#2      TGCTGGCATGGCATTGAGATAACGGGCAGTGTGCGGAATCTTAGTCCGACGCTCTGGAAG 608
                                         *     ***     * *   *   ** **  *   ***   

consensus_8726#1      TG---AACCCCGTCGAGCATCCGCACGGTGGTGGTAACCATCAGCACATCGGTAAGGCGT 642
consensus_8726#0      TGTACAGCTTCTTGGAGTCTTCCTCCTTCGGCGCGA--CTTCGGCCTTCTCGTAGAACTG 886
consensus_8726#2      TTTG-AGCATCTAACGGCACT--------------------------------------- 628
                      *    * *  *     *                                           

consensus_8726#1      CGACCGTCAAGCGCGGCACGCCCCCGGGT-CGCAAGGTCGGTCTCATCGCTG---CCCGT 698
consensus_8726#0      CTGCGCACCGACACCGTACGGTCTGGCCTGCTTCAGATCACGCTCAGCACGGGAATACTT 946
consensus_8726#2      ------------------------------------------------------------
                                                                                  

consensus_8726#1      CGTACCGGTCGTATCCGTGGTGGCAAGGGCGA----CGAGAAGTTCAAGGAGAAGG--AG 752
consensus_8726#0      GGCGGCGGACACCATCTTCATGGATTGGGTGATCTTCTGGATGTTCTTGACCGACTTCAG 1006
consensus_8726#2      ------------------------------------------------------------
                                                                                  

consensus_8726#1      AAGAAGTAAGCAGCCGAGTGTCGTCGCTGTGCTGT--TTATGTT--CTGTGGTGGTGTTT 808
consensus_8726#0      ACGGATCGAAATGGCCTTCAGCGTGGCCATGCCACGGTTCTGCTGACCAAGGCATAGCTC 1066
consensus_8726#2      ------------------------------------------------------------
                                                                                  

consensus_8726#1      ATACTTTTTCTTCCGGCACCCGACGTCCATCTGTACGGTGTGTGGAAGAGAGGAGGGAGG 868
consensus_8726#0      A-GCTGGCACCTGCGACAGCACGGGCACGACGGACTTGAACATGGCTGCGCTATTGGCGA 1125
consensus_8726#2      ------------------------------------------------------------
                                                                                  

consensus_8726#1      AA---------------------------------------------------------- 870
consensus_8726#0      TTTCAACAGGAAAGTCGACGAATAAAGGTGGCCTTTTTCGGTCGTTCGGTGCAAAAGCGG 1185
consensus_8726#2      ------------------------------------------------------------
                                                                                  

consensus_8726#1      ------------------------------------------------------------
consensus_8726#0      ATCAGAATTTTCTTATCCGATTCTACGGGTGTCAAAACCCACGCGTCCGCGGACGCGTCC 1245
consensus_8726#2      ------------------------------------------------------------
                                                                                  

consensus_8726#1      ----------------
consensus_8726#0      GCCCACGCGTCCGCGG 1261
consensus_8726#2      ----------------
                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)