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Anopheles gambiae
cluster # 8738 cluster # 8738       Sequences # 12       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8738#0 length = 1027 sequences # 4  
consensus_8738#1 length = 731 sequences # 4  
consensus_8738#2 length = 701 sequences # 1  
consensus_8738#3 length = 670 sequences # 1  
consensus_8738#4 length = 604 sequences # 1  
consensus_8738#5 length = 441 sequences # 1  

consensusID : consensus_8738#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1027
fasta sequence
                              [CCGCAAGTACCTGTACATGCTGATGGAAAGCTGCCTGGGCGGGGAGCTGTGGACGATCTTGCGCGATCGTGGCCACTTTGATGATGGCACTACGCGCTTTTACACGGCTTGCGTGGTGGAGGCGTTTGATTATCTGCACTCGCGCAACATAATCTATCGCGATCTGAAGCCGGAGAATCTGCTGCTGGATGTGTCGGGGTACGTGAAGCTGGTGGACTTTGGATTCGCTAAGAAGCTGCAATCAGGTCGCAAAACATGGACGTTCTGCGGTACGCCGGAGTACGTAGCGCCGGAAGTTATTCTTAACCGTGGCCATGACATCAGTGCCGACTATTGGTCGCTTGGAGTGCTCATGTTTGAGCTGCTGACCGGTACGCCACCGTTCACTGGAGCCGATCCGATGCGCACGTACAACATCATCCTGAAGGGTATCGATGCGATCGAGTTCCCGCGCAACATCACCCGCAATGCCAGTGCGCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGGCATCAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAATCGTTCACTGCCGCCGCCAATCCTGCCCAAGGTACAGAGCGTCGTCGATACGGTCAACTTTGATGACTATCCGGCCGATCCGGATGGTCCTCCGCCNGATGATCTGTCCGGATGGGACGATGATNTCTAAGCGAAACGTCGTGTCCCCTCTTGNCTGCTGTGCGCTCTTTGATGAAAGATC-NTTTCGCGCT-AACACTTCCTATAAGAAAGTTTTGCTTCTTCTCTCCCCCGTGCGTCCCGTGCAATAAGGGTACATTTTCGGGCGTTTTTGTTTTCGTTTTTGCTTCATTTTGATGAATGAGAGAGAGAGAGAAAGAGAGCCAGCGATTGAAGTGATTGAACGTTAATACCGTCGGTCGTCTAGCGCTTGGTTGAACGTTTGGTTGTTCCTTTTGGAGTGAATGAGGTGTTTGTGGCGGTGTGACCTTGT]

[+] EMBL BM610214             [CCGCAAGTACCTGTACATGCTGATGGAAAGCTGCCTGGGCGGGGAGCTGTGGACGATCTTGCGCGATCGTGGCCACTTTGATGATGGCACTACGCGCTTTTACACGGCTTGCGTGGTGGAGGCGTTTGATTATCTGCACTCGCGCAACATAATCTATCGCGATCTGAAGCCGGAGAATCTGCTGCTGGATGTGTCGGGGTACGTGAAGCTGGTGGACTTTGGATTCGCTAAGAAGCTGCAATCAGGTCGCAAAACATGGACGTTCTGCGGTACGCCGGAGTACGTAGCGCCGGAAGTTATTCTTAACCGTGGCCATGACATCAGTGCCGACTATTGGTCGCTTGGAGTGCTCATGTTTGAGCTGCTGACCGGTACGCCACCGTTCACTGGAGCCGATCCGATGCGCACGTACAACATCATCCTGAAGGGTATCGATGCGATCGAGTTCCCGCGCAACATCACCCGCAATGCCAGTGCGCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGGCATCAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAATCGTTCACTGCCGCCGCCAATCCTGCCCAAGGTACAGAGCGTCGTCGATA                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX625790             [                                                                                            CGCGCTTTTACNCGGNTTGCGTGGTGGAGGCGTTCGATTATCTGCACTCGCGCAACATTATCTATCGCGATCTGAAGCCGGAGAATCTGCTGCTGGATGTGTCGGGGTACGTGAAGCTGGTGGACTTTGGATTCGCTAANAAGCTGCAATCAGGTCGCAAAACATGGACGTTCTGCGGTACGCCGGANTACGTAGCGCCGGAAGTTATTCTTAACCGTGGCCATGACATCANTGCCGACTATTGGTCGCTTGGAGTGCTCATGTTTGAGCTGCTGACCGGTACGCCACCGTTCACTGGAGCCGATCCGATGCGCACGTACAACATCATCCTGAAGGGTATCGATGCGATCGAGTTCCCGCGCANCATCACCCGCAATGCCAGTGCGCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGGCATCAGTGAAATCCAANAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAATCGTTCACTGCCGCCGCCGATCCTACCGAAAGTACAGAGCGTCNTCGATACGGTCAACTTTGATGACTATCCGGCCGATCCGGATGGTCCTCCGCCNGATGATCTGTCCGGATGGGACGATGATNTCTAAGCGAAACGTCGTGTCCCCTCTTGNCTGCTGTGCGCTCTTTGATGAAAGATC NTTTCGCGCT AACACTTCCTATAAGAAAGTTTTGCTT                                                                                                                                                                                                                    ]
[+] EMBL BM623124             [                                                                                                       cCGGCTTGCGTGGTGGAGGCGTTTGATTATCTGCACTCGCGCAACATAATCTATCGCGATCTGAAGCCGGAGAATCTGCTGCTGGATGTGTCGGGGTACGTGATGCTGGTGGACTTTGGATTCGCTAAGAAGCTGCAATCAGGTCGCAAAACATGGACGTTCTGCGGTACGCCGGAGTACGTAGCGCCGGAAGTTATTCTTAACCGTGGCCATGACATCAGTGCCGACTATTGGTCGCTTGGAGTGCTCATGTTTGAGCTGCTGACCGGTACGCCACCGTTCACTGGAGCCGATCCGATGCGCACGTACAACATCATCCTGAAGGGTATCGATGCGATCGAGTTCCCGCGCAACATCACCCGCAATGCCAGTGCGCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGGCATCAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAATCGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX605325             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTGCTGTGCGCTCTTTGATGAAAGATCTTTTTCGCGCTAAACACTTCCTATAAGAAAGTTTTGCTTCTTCTCTCCCCCGTGCGTCCCGTGCAATAAGGGTACATTTTCGGGCGTTTTTGTTTTCGTTTTTGCTTCATTTTGATGAATGAGAGAGAGAGAGAAAGAGAGCCAGCGATTGAAGTGATTGAACGTTAATACCGTCGGTCGTCTAGCGCTTGGTTGAACGTTTGGTTGTTCCTTTTGGAGTGAATGAGGTGTTTGTGGCGGTGTGACCTTGT]


>consensus_8738#0 CCGCAAGTACCTGTACATGCTGATGGAAAGCTGCCTGGGCGGGGAGCTGTGGACGATCTT GCGCGATCGTGGCCACTTTGATGATGGCACTACGCGCTTTTACACGGCTTGCGTGGTGGA GGCGTTTGATTATCTGCACTCGCGCAACATAATCTATCGCGATCTGAAGCCGGAGAATCT GCTGCTGGATGTGTCGGGGTACGTGAAGCTGGTGGACTTTGGATTCGCTAAGAAGCTGCA ATCAGGTCGCAAAACATGGACGTTCTGCGGTACGCCGGAGTACGTAGCGCCGGAAGTTAT TCTTAACCGTGGCCATGACATCAGTGCCGACTATTGGTCGCTTGGAGTGCTCATGTTTGA GCTGCTGACCGGTACGCCACCGTTCACTGGAGCCGATCCGATGCGCACGTACAACATCAT CCTGAAGGGTATCGATGCGATCGAGTTCCCGCGCAACATCACCCGCAATGCCAGTGCGCT GATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGGCAT CAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAATCG TTCACTGCCGCCGCCAATCCTGCCCAAGGTACAGAGCGTCGTCGATACGGTCAACTTTGA TGACTATCCGGCCGATCCGGATGGTCCTCCGCCNGATGATCTGTCCGGATGGGACGATGA TNTCTAAGCGAAACGTCGTGTCCCCTCTTGNCTGCTGTGCGCTCTTTGATGAAAGATCNT TTCGCGCTAACACTTCCTATAAGAAAGTTTTGCTTCTTCTCTCCCCCGTGCGTCCCGTGC AATAAGGGTACATTTTCGGGCGTTTTTGTTTTCGTTTTTGCTTCATTTTGATGAATGAGA GAGAGAGAGAAAGAGAGCCAGCGATTGAAGTGATTGAACGTTAATACCGTCGGTCGTCTA GCGCTTGGTTGAACGTTTGGTTGTTCCTTTTGGAGTGAATGAGGTGTTTGTGGCGGTGTG ACCTTGT



consensusID : consensus_8738#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 731
fasta sequence
                              [CGACCCACGCGTCCGGTGTTTGTGGCGGTGTGACCTTGTGCACGGGGACGGTGTAGCGTTTTTATACATATATTTTAAAAAGTTTTATCATTTTTTTTAATCAGAAAACAAGAAAAAAAGGTGCAGACACAGAAAGGCAGT-CAATTGCAGAGTGTACTTTTGT-TTTTAAATGGAAAAG-AAGAGAAAGTGTCCTTAAACAATTAGTTATACGTTTAACAAATAATAGC-----AAAAAAATACAAGAATTAGAGGATTGAGCACAGCATCGTCCATGTCATATGTGTGAGGTGAGAGGGTCGGAAAAGCAGAGAA-AAAATGTTGATTATGATTGTGTACTGCTTTTGTACTTCCC-------TCTTCTTTGATAT-CTGTTTTCCATCCTGAATGATCCTTTCTCGTTAGAGATCACGTGCAACGACCATCGTACCACGTGGTATGCCTTAGCTAACAAAAAAGCCCCAATTTTTAATGCTAACAC----CTCTCTCTCTACACCCCGTTACTTCAGCTAATTGTTGGTCAGAATTTAAACACCCCGATAATAACCCCGATAATAGTTGTTGGACGCTAATTGATAATGATAACGTTTGGTTAG-CGAGAACAGGAGAGAGAGAAAGAGAAACGAATGTATGTTTGTATGTGTGTGTGTTGCGTGCGTGCGTGTATGTTGTTCAATTTGTGCAATCGAGATTCTGTAAAATATACGTGCTCAAAAAAGCGAAGTCTGTACATAACAAAAA]

[+] EMBL BM638456             [CGACCCACGCGTCCGGTGTTTGTGGCGGTGTGACCTTGTGCACGGGGACGGTGTAGCGTTTTTATACATATATTTTAAAAAGTTTTATCATTTTTTTTAATCAGAAAACAAGAAAAAAAGGTGCAGACACAGAAAGGCAGT CTATTGCAGAGTGTACTT   T TTTT AATGGAAAAG AAGAGAAAGTGTCCTTAAACAATTAGTTATACGTTTAACAAATAATAGCAAAAAAAAAAAATACAAGAATTAGAGGATTGAGCACAGCATCGTCCATGTCATATGTGTGAGGTGAGAGGGTCGGAAAAGGAGAGAAGAAACTGTTGATTATGATTGTGTACTGC TTTATACTTCCCTGTTTTTTCTTCTTTGATATCCTTTTTTCCATCCTGAATGATCCTTTCTCGTTAGAGATCACGTGCAACGACCATCGTACCACGTGGTATGCCTTAGCTAACAAAAAAGCCCCAATTTTTAATGCTAACACCTCTCTCTCTCTCTACACCCCGTTACTTCAGCTAATTGTTGGTCAGAATTTAAACACCCCGATAATAACCCCGATAATAGTTGTTGGACGCTAATTGATAATGATAACGTTTGGTTAG CGAGAACAGGAGAGAGAGA                                                                                                                              ]
[+] EMBL BX619606             [                                                                                                                        GTGCACACACAGAAAGGCAGTNCAATTGCAGAGTGTACTTTTGTNTTTTAAATGGAAAAGTAAGAGAAAGTGTCCTTAAACAATTAGTTATACGTATAACAAATAATAGC     AAAAAAATACAAGAATTAGAGGATTGAGCACAGCATCGTCCATGTCATATGTGTGAGGTGAGAGGGTCGGAAAAGCAGAGAA AAAATGTTGATTATGATTGTGTACTGCTTTTGTACTTCCC       TCTTCTTTGATAT CTGTTTACCATCCTGAATGATCCTTTCTCGTTAGAGATCACGTGCAACGACCATCGTACCACGTGGTATGCCTTAGCTAACAAAAAAGCCCCAATTTTTAATGCTAACAC    CTCTCTCTCTACACCCCGTCACTTCAGCTAATTGTTGGTCAGAATTTAAACACCCCGATAATAACCCCGATAATAGTTGTTGGACGCTAATTGATAATGATAACGTTTGGTTAGCCGAGAACAGGA                                                                                                                                      ]
[+] EMBL AGA282036            [                                                                                                                                ACAGAAAGGCAGT CAATTGCAGAGTGTACTTTTGT TTTTAAATGGAAAAG AAGAGAAAGTGTCCTTAAACAATTAGTTATACGTTTAACAAATAATAGC     AAAAAAATACAAGAATTAGAGGATTGAGCACAGCATCGTCCATGTCATATGTGTGAGGTGAGAGGGTCGGAAAAGCAGAGAA AAAATGTTGATTATGATTGTGTACTGCTTTTGTACTTCCC       TCTTCTTTGATAT CTGTTTTCCATCCTGAATGATCCTTTCTCGTTAGAGATCACGTGCAACGACCATCGTACCACGTGGTATGCCTTAGCTAACAAAAAAGCCCCAATTTTTAATGCTAACAC    CTCTCTCTCTACACCCCGTTACTTCAGCTAATTGTTGGTCAGAATTTAAACACCCCGATAATAACCCCGAT                                                                                                                                                                                             ]
[-] EMBL AGA280337            [                                                                                                                                                                                                                                                                                                                                  TGTTGATTATGATTGTGTACTGCTTTTGTACTTCCC       TCTTCTTTGATAT CTGTTTACCATCCTGAATGATCCTTTCTCGTTAGAGATCACGTGCAACGACCATCGTACCACGTGGTATGCCTTAGCTAACAAAAAAGCCCCAATTTTTAATGCTAACAC    CTCTCTCTCTACACCCCGTTACTTCAGCTAATTGTTGGTCAGAATTTAAACACCCCGATAATAACCCCGATAATAGTTGTTGGACGCTAATTGATAATGATAACGTTTGGTTAG CGAGAACAGGAGAGAGAGAAAGAGAAACGAATGTATGTTTGTATGTGTGTGTGTTGCGTGCGTGCGTGTATGTTGTTCAATTTGTGCAATCGAGATTCTGTAAAATATACGTGCTCAAAAAAGCGAAGTCTGTACATAACAAAAA]


>consensus_8738#1 CGACCCACGCGTCCGGTGTTTGTGGCGGTGTGACCTTGTGCACGGGGACGGTGTAGCGTT TTTATACATATATTTTAAAAAGTTTTATCATTTTTTTTAATCAGAAAACAAGAAAAAAAG GTGCAGACACAGAAAGGCAGTCAATTGCAGAGTGTACTTTTGTTTTTAAATGGAAAAGAA GAGAAAGTGTCCTTAAACAATTAGTTATACGTTTAACAAATAATAGCAAAAAAATACAAG AATTAGAGGATTGAGCACAGCATCGTCCATGTCATATGTGTGAGGTGAGAGGGTCGGAAA AGCAGAGAAAAAATGTTGATTATGATTGTGTACTGCTTTTGTACTTCCCTCTTCTTTGAT ATCTGTTTTCCATCCTGAATGATCCTTTCTCGTTAGAGATCACGTGCAACGACCATCGTA CCACGTGGTATGCCTTAGCTAACAAAAAAGCCCCAATTTTTAATGCTAACACCTCTCTCT CTACACCCCGTTACTTCAGCTAATTGTTGGTCAGAATTTAAACACCCCGATAATAACCCC GATAATAGTTGTTGGACGCTAATTGATAATGATAACGTTTGGTTAGCGAGAACAGGAGAG AGAGAAAGAGAAACGAATGTATGTTTGTATGTGTGTGTGTTGCGTGCGTGCGTGTATGTT GTTCAATTTGTGCAATCGAGATTCTGTAAAATATACGTGCTCAAAAAAGCGAAGTCTGTA CATAACAAAAA



consensusID : consensus_8738#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 701
fasta sequence
                              [GAATCGCCCCGTATNATCATCCTGAAGGGTATCTGATGCGATCGAGTTCCCGCGCAACATCACCCGCAATGCCAGTGCGCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGGCATCAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAATCGTTCACTGCCGCCGCCGATCCTACCTGAAAGTACAGAGCGTCGTCGATACTGGCCAACTTTGATGACTATCCGGCCGATCCGGATGGTCCTCCGCCGGATGATCTGTCCGGATGGGACGATGATTTCTAAGCGAAACGTCGTGTCCCCTCTTGCCTGCTGTGCGCTCTTTGATGAAAGATCTTTTCGCGCTAAACACTTCCTATAAGAAAGTTTTGCTTCTTCTCTCCCCCGGTGCCTCCCGTGCAATAAGGTTACATTTTCGTGCGTTATTATTGTTTCATTTTGATGAATGAAAGAGAGAGAGAGAGANGAGAGAGAGTGAGAAAGAGAGCCAGCGATTGAAGTTTTGANACGTTAATACCGTCTGTCGATCTGGCGCTTGGTTGAACGTAATGGTATTGTACCCTCTTCNTGGAGGTGAATTGACGCGTNGTAACTTGTAGTGCANGTNGATGGCCCCTTGCTGGCCACCGGGANNNAACAGGTGTTAAACCGTCTCT]

[+] EMBL AL931617             [GAATCGCCCCGTATNATCATCCTGAAGGGTATCTGATGCGATCGAGTTCCCGCGCAACATCACCCGCAATGCCAGTGCGCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGGCATCAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAATCGTTCACTGCCGCCGCCGATCCTACCTGAAAGTACAGAGCGTCGTCGATACTGGCCAACTTTGATGACTATCCGGCCGATCCGGATGGTCCTCCGCCGGATGATCTGTCCGGATGGGACGATGATTTCTAAGCGAAACGTCGTGTCCCCTCTTGCCTGCTGTGCGCTCTTTGATGAAAGATCTTTTCGCGCTAAACACTTCCTATAAGAAAGTTTTGCTTCTTCTCTCCCCCGGTGCCTCCCGTGCAATAAGGTTACATTTTCGTGCGTTATTATTGTTTCATTTTGATGAATGAAAGAGAGAGAGAGAGANGAGAGAGAGTGAGAAAGAGAGCCAGCGATTGAAGTTTTGANACGTTAATACCGTCTGTCGATCTGGCGCTTGGTTGAACGTAATGGTATTGTACCCTCTTCNTGGAGGTGAATTGACGCGTNGTAACTTGTAGTGCANGTNGATGGCCCCTTGCTGGCCACCGGGANNNAACAGGTGTTAAACCGTCTCT]


>consensus_8738#2 GAATCGCCCCGTATNATCATCCTGAAGGGTATCTGATGCGATCGAGTTCCCGCGCAACAT CACCCGCAATGCCAGTGCGCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCT CGGCTACCAGCGAGGCGGCATCAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTA CTGGGAAGGATTGCGGAATCGTTCACTGCCGCCGCCGATCCTACCTGAAAGTACAGAGCG TCGTCGATACTGGCCAACTTTGATGACTATCCGGCCGATCCGGATGGTCCTCCGCCGGAT GATCTGTCCGGATGGGACGATGATTTCTAAGCGAAACGTCGTGTCCCCTCTTGCCTGCTG TGCGCTCTTTGATGAAAGATCTTTTCGCGCTAAACACTTCCTATAAGAAAGTTTTGCTTC TTCTCTCCCCCGGTGCCTCCCGTGCAATAAGGTTACATTTTCGTGCGTTATTATTGTTTC ATTTTGATGAATGAAAGAGAGAGAGAGAGANGAGAGAGAGTGAGAAAGAGAGCCAGCGAT TGAAGTTTTGANACGTTAATACCGTCTGTCGATCTGGCGCTTGGTTGAACGTAATGGTAT TGTACCCTCTTCNTGGAGGTGAATTGACGCGTNGTAACTTGTAGTGCANGTNGATGGCCC CTTGCTGGCCACCGGGANNNAACAGGTGTTAAACCGTCTCT



consensusID : consensus_8738#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence
                              [AGGCAAGAATCGGCACGNNGGAAGCTGGTGGACTTTGGATTCGCTAAGAAGCTGCAATCAGGTCGCAAAACATGGACGTTCTGCGGTACGCCGGAGTACGTAGCGCCGGAAGTTATTCTTAACCGTGGCCATGACATCAGTGCCGACTATTGGTCGCTTGGAGTGCTCATGTTTGAGCTGCTGACCGGTACGCCACCGTTCACTGGAGCCGATCCGATGCGCACGTACAACATCATCCTGAAGGGTATCGATGCGATCGAGTTCTCGCGCAACATCACCCGCAATGCCAGTGCGCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGGCATCAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAATCGTTCACTGCCGCCGCCGATCCTACCGAAAGTACAGAGCGTCGTCGATACGGGCAACTTTGATGACTATCCGGCCGATCCGGATGGTCCTCCGGCGGATGATCTGTGCCGGATGGGACGATGATTTCTAAGCGAAACGTCGTGTCCCCGTCTTGCCTGGCTGTGCGCTCTTTGATGAAAGATCTTTTTCGCGCTAAACACTTCCTATAAGAAAGTTTGNTTCTTCGTCTCCCCCGTGGCTCCCGTGCAATAAGGGT]

[+] EMBL BX468402             [AGGCAAGAATCGGCACGNNGGAAGCTGGTGGACTTTGGATTCGCTAAGAAGCTGCAATCAGGTCGCAAAACATGGACGTTCTGCGGTACGCCGGAGTACGTAGCGCCGGAAGTTATTCTTAACCGTGGCCATGACATCAGTGCCGACTATTGGTCGCTTGGAGTGCTCATGTTTGAGCTGCTGACCGGTACGCCACCGTTCACTGGAGCCGATCCGATGCGCACGTACAACATCATCCTGAAGGGTATCGATGCGATCGAGTTCTCGCGCAACATCACCCGCAATGCCAGTGCGCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGGCATCAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAATCGTTCACTGCCGCCGCCGATCCTACCGAAAGTACAGAGCGTCGTCGATACGGGCAACTTTGATGACTATCCGGCCGATCCGGATGGTCCTCCGGCGGATGATCTGTGCCGGATGGGACGATGATTTCTAAGCGAAACGTCGTGTCCCCGTCTTGCCTGGCTGTGCGCTCTTTGATGAAAGATCTTTTTCGCGCTAAACACTTCCTATAAGAAAGTTTGNTTCTTCGTCTCCCCCGTGGCTCCCGTGCAATAAGGGT]


>consensus_8738#3 AGGCAAGAATCGGCACGNNGGAAGCTGGTGGACTTTGGATTCGCTAAGAAGCTGCAATCA GGTCGCAAAACATGGACGTTCTGCGGTACGCCGGAGTACGTAGCGCCGGAAGTTATTCTT AACCGTGGCCATGACATCAGTGCCGACTATTGGTCGCTTGGAGTGCTCATGTTTGAGCTG CTGACCGGTACGCCACCGTTCACTGGAGCCGATCCGATGCGCACGTACAACATCATCCTG AAGGGTATCGATGCGATCGAGTTCTCGCGCAACATCACCCGCAATGCCAGTGCGCTGATC AAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGGCATCAGT GAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAATCGTTCA CTGCCGCCGCCGATCCTACCGAAAGTACAGAGCGTCGTCGATACGGGCAACTTTGATGAC TATCCGGCCGATCCGGATGGTCCTCCGGCGGATGATCTGTGCCGGATGGGACGATGATTT CTAAGCGAAACGTCGTGTCCCCGTCTTGCCTGGCTGTGCGCTCTTTGATGAAAGATCTTT TTCGCGCTAAACACTTCCTATAAGAAAGTTTGNTTCTTCGTCTCCCCCGTGGCTCCCGTG CAATAAGGGT



consensusID : consensus_8738#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence
                              [CGAGCAGAATCGCACGAGGCTTAGATTGAAGTTGAACGTTAATACCGTCTGTCGGTCTAGCGCTTGGTTGAACGTTTGGTTGTTCCTTTTGGAGTGAATGAGGTGTTTGTGGCGGTGTGACCTTGTGCACGGGGACGGGTGTACGTTTTTATACATATATTTTAAAAAGTTTTATCATTTTTTTTAATCAGAAAACAAGAAAAAAAGGTGCAGACACAGAAAGGCAGTCTATTGCAGAGTGTACTTTTTTTAATGGAAAAGAAGAGAAAGTGTCCTTAAGACAATTAGTTATACGTTTAACAAATAATAGCAAAAAAAAATACAAGAATTAGAGGATTGAGCACAGCATCGTCCATGTCATATGTGTGAGGTGAGAGGGTCGGAAATGGAAGAGAAGAAAATGTTGATTATGAGTTGTGTACTGCTTTTGTATTTCCCTCTTCTTTGATATCCTTTTTTCCATCCTGAATGATCCTTTCTCGTTGAGAGATCACGTGCGAACGACCATCGTACCACGGTGGGTATGCCTTAGGCTAGACAAAAAAGCCCCCNATTTTTAATGCGTAACACCTCTCTCGTCTAAACCCGGTTAACTTCAGNTAAT]

[+] EMBL BX469718             [CGAGCAGAATCGCACGAGGCTTAGATTGAAGTTGAACGTTAATACCGTCTGTCGGTCTAGCGCTTGGTTGAACGTTTGGTTGTTCCTTTTGGAGTGAATGAGGTGTTTGTGGCGGTGTGACCTTGTGCACGGGGACGGGTGTACGTTTTTATACATATATTTTAAAAAGTTTTATCATTTTTTTTAATCAGAAAACAAGAAAAAAAGGTGCAGACACAGAAAGGCAGTCTATTGCAGAGTGTACTTTTTTTAATGGAAAAGAAGAGAAAGTGTCCTTAAGACAATTAGTTATACGTTTAACAAATAATAGCAAAAAAAAATACAAGAATTAGAGGATTGAGCACAGCATCGTCCATGTCATATGTGTGAGGTGAGAGGGTCGGAAATGGAAGAGAAGAAAATGTTGATTATGAGTTGTGTACTGCTTTTGTATTTCCCTCTTCTTTGATATCCTTTTTTCCATCCTGAATGATCCTTTCTCGTTGAGAGATCACGTGCGAACGACCATCGTACCACGGTGGGTATGCCTTAGGCTAGACAAAAAAGCCCCCNATTTTTAATGCGTAACACCTCTCTCGTCTAAACCCGGTTAACTTCAGNTAAT]


>consensus_8738#4 CGAGCAGAATCGCACGAGGCTTAGATTGAAGTTGAACGTTAATACCGTCTGTCGGTCTAG CGCTTGGTTGAACGTTTGGTTGTTCCTTTTGGAGTGAATGAGGTGTTTGTGGCGGTGTGA CCTTGTGCACGGGGACGGGTGTACGTTTTTATACATATATTTTAAAAAGTTTTATCATTT TTTTTAATCAGAAAACAAGAAAAAAAGGTGCAGACACAGAAAGGCAGTCTATTGCAGAGT GTACTTTTTTTAATGGAAAAGAAGAGAAAGTGTCCTTAAGACAATTAGTTATACGTTTAA CAAATAATAGCAAAAAAAAATACAAGAATTAGAGGATTGAGCACAGCATCGTCCATGTCA TATGTGTGAGGTGAGAGGGTCGGAAATGGAAGAGAAGAAAATGTTGATTATGAGTTGTGT ACTGCTTTTGTATTTCCCTCTTCTTTGATATCCTTTTTTCCATCCTGAATGATCCTTTCT CGTTGAGAGATCACGTGCGAACGACCATCGTACCACGGTGGGTATGCCTTAGGCTAGACA AAAAAGCCCCCNATTTTTAATGCGTAACACCTCTCTCGTCTAAACCCGGTTAACTTCAGN TAAT



consensusID : consensus_8738#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence
                              [GTACCACGTGGTATGCCTTAGCTAACAAAGAAGCCCCAATTTTTAATGCTAACACCTCTCTCTCTACACCCCGTTACTTCAGCTAATTGTTGGTCAAAATTTAAACACCCCGATAATAACCCCGATAATAGTTGTTGGACGCTAATTGATAATGATAACGTTTGGTTAGCGAGAACATGAGAGAGAGAAAGAAGAATGCGTACAGCGGTACAAGATGAACAAAGCCATAAAGAATGAAAGTCACTAACCGAAGCATAGAGTCCAATTGTTGATGAAAATTGGAAGAAAAGGTAACATGTCATGTTTTGATTCAAGCACTCTCAACATTCCGATCGGAATAGAGCATTTGGTTTATGGTTGTTTGATTGATTTGTGTTTGATAGTTTATTTGCATGATCTGTTACTATCATTTCCTTACATGCCATACAGTCTTAATAACTT]

[+] EMBL BX611740             [GTACCACGTGGTATGCCTTAGCTAACAAAGAAGCCCCAATTTTTAATGCTAACACCTCTCTCTCTACACCCCGTTACTTCAGCTAATTGTTGGTCAAAATTTAAACACCCCGATAATAACCCCGATAATAGTTGTTGGACGCTAATTGATAATGATAACGTTTGGTTAGCGAGAACATGAGAGAGAGAAAGAAGAATGCGTACAGCGGTACAAGATGAACAAAGCCATAAAGAATGAAAGTCACTAACCGAAGCATAGAGTCCAATTGTTGATGAAAATTGGAAGAAAAGGTAACATGTCATGTTTTGATTCAAGCACTCTCAACATTCCGATCGGAATAGAGCATTTGGTTTATGGTTGTTTGATTGATTTGTGTTTGATAGTTTATTTGCATGATCTGTTACTATCATTTCCTTACATGCCATACAGTCTTAATAACTT]


>consensus_8738#5 GTACCACGTGGTATGCCTTAGCTAACAAAGAAGCCCCAATTTTTAATGCTAACACCTCTC TCTCTACACCCCGTTACTTCAGCTAATTGTTGGTCAAAATTTAAACACCCCGATAATAAC CCCGATAATAGTTGTTGGACGCTAATTGATAATGATAACGTTTGGTTAGCGAGAACATGA GAGAGAGAAAGAAGAATGCGTACAGCGGTACAAGATGAACAAAGCCATAAAGAATGAAAG TCACTAACCGAAGCATAGAGTCCAATTGTTGATGAAAATTGGAAGAAAAGGTAACATGTC ATGTTTTGATTCAAGCACTCTCAACATTCCGATCGGAATAGAGCATTTGGTTTATGGTTG TTTGATTGATTTGTGTTTGATAGTTTATTTGCATGATCTGTTACTATCATTTCCTTACAT GCCATACAGTCTTAATAACTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8738#0      CCGCAAGTACCTGTACATGCTGATGGAAAGCTGCCTGGGCGGGGAGCTGTGGACGATCTT 60
consensus_8738#3      ------------------------------------------------------------
consensus_8738#2      ------------------------------------------------------------
consensus_8738#1      ------------------------------------------------------------
consensus_8738#4      ------------------------------------------------------------
consensus_8738#5      ------------------------------------------------------------
                                                                                  

consensus_8738#0      GCGCGATCGTGGCCACTTTGATGATGGCACTACGCGCTTTTACACGGCTTGCGTGGTGGA 120
consensus_8738#3      ------------------------------------------------------------
consensus_8738#2      ------------------------------------------------------------
consensus_8738#1      ------------------------------------------------------------
consensus_8738#4      ------------------------------------------------------------
consensus_8738#5      ------------------------------------------------------------
                                                                                  

consensus_8738#0      GGCGTTTGATTATCTGCACTCGCGCAACATAATCTATCGCGATCTGAAGCCGGAGAATCT 180
consensus_8738#3      ------------------------------------------------------------
consensus_8738#2      ------------------------------------------------------------
consensus_8738#1      ------------------------------------------------------------
consensus_8738#4      ------------------------------------------------------------
consensus_8738#5      ------------------------------------------------------------
                                                                                  

consensus_8738#0      GCTGCTGGATGTGTCGGGGTACGTGAAGCTGGTGGACTTTGGATTCGCTAAGAAGCTGCA 240
consensus_8738#3      ----AGGCAAGAATCGGCACGNNGGAAGCTGGTGGACTTTGGATTCGCTAAGAAGCTGCA 56
consensus_8738#2      ------------------------------------------------------------
consensus_8738#1      ------------------------------------------------------------
consensus_8738#4      ------------------------------------------------------------
consensus_8738#5      ------------------------------------------------------------
                                                                                  

consensus_8738#0      ATCAGGTCGCAAAACATGGACGTTCTGCGGTACGCCGGAGTACGTAGCGCCGGAAGTTAT 300
consensus_8738#3      ATCAGGTCGCAAAACATGGACGTTCTGCGGTACGCCGGAGTACGTAGCGCCGGAAGTTAT 116
consensus_8738#2      ------------------------------------------------------------
consensus_8738#1      ------------------------------------------------------------
consensus_8738#4      -----------------------------------------------------CGAGCAG 7
consensus_8738#5      ------------------------------------------------------------
                                                                                  

consensus_8738#0      TCTTAACCGTGGCCATGACATCAGTGCCGACTATTGGTCGCTTGGAGTGCTCATGTTTGA 360
consensus_8738#3      TCTTAACCGTGGCCATGACATCAGTGCCGACTATTGGTCGCTTGGAGTGCTCATGTTTGA 176
consensus_8738#2      ------------------------------------------------------------
consensus_8738#1      ------------------------------------------------------------
consensus_8738#4      AATCGCACGAGGCTTAGATTGAAGTTGAACGTTAATACCGTCTGTCGGTCTAGCGCTTGG 67
consensus_8738#5      ------------------------------------------------------------
                                                                                  

consensus_8738#0      GCTGCTGACCGGTACGCCACCGTTCACTGGAGCCGATCCGATGCGCACGTACAACATCAT 420
consensus_8738#3      GCTGCTGACCGGTACGCCACCGTTCACTGGAGCCGATCCGATGCGCACGTACAACATCAT 236
consensus_8738#2      ---------------------------------------GAATCGC-CCCGTATNATCAT 20
consensus_8738#1      --------------------CGACCCACGCGTCCGGTGTTTGTGGC-GGTGTGACCTTGT 39
consensus_8738#4      TTGAACGTTTGGTTGTTCCTTTTGGAGTGAATGAGGTGTTTGTGGC-GGTGTGACCTTGT 126
consensus_8738#5      -------------------------------------GTACCACGT-GGTATGCCTTAGC 22
                                                                  *           *   

consensus_8738#0      CCTGAAGGGTATC--GATGCGATCGAGTTCCCGCGCAACATCACCCGCAATGCCAGTGC- 477
consensus_8738#3      CCTGAAGGGTATC--GATGCGATCGAGTTCTCGCGCAACATCACCCGCAATGCCAGTGC- 293
consensus_8738#2      CCTGAAGGGTATCT-GATGCGATCGAGTTCCCGCGCAACATCACCCGCAATGCCAGTGC- 78
consensus_8738#1      GCACGGGGACGGTGTAGCGTTTTTAT----ACATATATTTTAAAAAGTTTTATCATTTTT 95
consensus_8738#4      GCACGGGGACGGGTGTACGTTTTTAT----ACATATATTTTAAAAAGTTTTATCATTTTT 182
consensus_8738#5      TAACAAAGAAGCCCCAAT-TTTTAATGCTAACACCTCTCTCTCTACACCCCGTTACTTCA 81
                             *              *        *                      * *   

consensus_8738#0      GCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGG 537
consensus_8738#3      GCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGG 353
consensus_8738#2      GCTGATCAAGAAGCTGTGCCGGGACAATCCGACCGAGCGTCTCGGCTACCAGCGAGGCGG 138
consensus_8738#1      TTTAATCAGAAAACAAGAAAAAAAGGTGCAGACACAGAAAGGCAGT--CAATTGCAG-AG 152
consensus_8738#4      TTTAATCAGAAAACAAGAAAAAAAGGTGCAGACACAGAAAGGCAGT--CTATTGCAG-AG 239
consensus_8738#5      GCTAATTGTTGGTCAAAATTTAAACACCCCGATA-ATAACCCCGATAATAGTTGTTG-GA 139
                        * **       *         *    * **   *      *          *  *   

consensus_8738#0      CATCAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAA 597
consensus_8738#3      CATCAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAA 413
consensus_8738#2      CATCAGTGAAATCCAAAAGCACAAATGGTTCGATGGCTTCTACTGGGAAGGATTGCGGAA 198
consensus_8738#1      TG-TACTTTTGTTTTTAAATGGAAAAGAAGAGAAAGTGTC--CTTAA-ACAATTAGTTAT 208
consensus_8738#4      TG-TACTTTTTTT----AATGGAAAAGAAGAGAAAGTGTC--CTTAAGACAATTAGTTAT 292
consensus_8738#5      CGCTAATTGATAATGATAACGTTTGGTTAGCGAGAACATG--AGAGAGAGAAAGAAGAAT 197
                          * *          *             **     *         *  *      * 

consensus_8738#0      TCGTTCA-CTGCCGCCGCCAATCCTGCC-CAAGGTACAGAGCGTCGTCGATAC-GGTCAA 654
consensus_8738#3      TCGTTCA-CTGCCGCCGCCGATCCTACC-GAAAGTACAGAGCGTCGTCGATAC-GGGCAA 470
consensus_8738#2      TCGTTCA-CTGCCGCCGCCGATCCTACCTGAAAGTACAGAGCGTCGTCGATACTGGCCAA 257
consensus_8738#1      ACGTTTAACAAATAATAGCAAAAAAA--TACAAGAATTAGAGG--ATTGA-GCACAGCAT 263
consensus_8738#4      ACGTTTAACAAATAATAGCAAAAAAAAATACAAGAATTAGAGG--ATTGA-GCACAGCAT 349
consensus_8738#5      GCGTACAGCGGTACAAGATGAACAAAGCCATAAAGAATGAAAGTCACTAA-CCGAAGCAT 256
                       ***  * *           *          *   *      *      *  *    ** 

consensus_8738#0      CTTTGATGACTATCCGGCCGATCCGGATGGTCCTCCGCCNGATGATCTGT-CCGGATGGG 713
consensus_8738#3      CTTTGATGACTATCCGGCCGATCCGGATGGTCCTCCGGCGGATGATCTGTGCCGGATGGG 530
consensus_8738#2      CTTTGATGACTATCCGGCCGATCCGGATGGTCCTCCGCCGGATGATCTGT-CCGGATGGG 316
consensus_8738#1      CGTCCATGTCATATGTGTGAGGTGAGAGGGTCGGAAA-AGCAGAGAA-AA--AATGTTG- 318
consensus_8738#4      CGTCCATGTCATATGTGTGAGGTGAGAGGGTCGGAAATGGAAGAGAAGAA--AATGTTG- 406
consensus_8738#5      AGA----GTCCAATTGTTGA----TGAAAATTGGAAG----AAAAGGTAA--CATGTCAT 302
                             * *               **   *          *              *   

consensus_8738#0      ACGATGATNTCTAAGCGAAACGTCGTGTCCCC-TCTTGNCTG-CTGTGCGCTCTTTGA-- 769
consensus_8738#3      ACGATGATTTCTAAGCGAAACGTCGTGTCCCCGTCTTGCCTGGCTGTGCGCTCTTTGA-- 588
consensus_8738#2      ACGATGATTTCTAAGCGAAACGTCGTGTCCCC-TCTTGCCTG-CTGTGCGCTCTTTGA-- 372
consensus_8738#1      ATTATGA-TTGTGTACTGC-TTTTGTACTTCCCTCTTCTTTGATATC-TGTTTTCCATCC 375
consensus_8738#4      ATTATGAGTTGTGTACTGC-TTTTGTATTTCCCTCTTCTTTGATATCCTTTTTTCCATCC 465
consensus_8738#5      GTTTTGATTCAAGCACT---CTCAACATTCCGATCGGAATAGAGCATTTGGTTTATGGT- 358
                          ***        *              *  **      *         * *      

consensus_8738#0      TGAAAGATCNTTT-CGCGCTAA-CACTTCCTATAAGAAAGTTTTGCTTCTTCTCTCCCCC 827
consensus_8738#3      TGAAAGATCTTTTTCGCGCTAAACACTTCCTATAAGAAAGTTTGNTTCTTCGTCTCCCCC 648
consensus_8738#2      TGAAAGATCTTTT-CGCGCTAAACACTTCCTATAAGAAAGTTTTGCTTCTTCTCTCCCCC 431
consensus_8738#1      TGAATGATCCTTT-CTCGTT--AGAGATCACGTGC-AACGACCATCGTACCACGT--GGT 429
consensus_8738#4      TGAATGATCCTTT-CTCGTTG-AGAGATCACGTGCGAACGACCATCGTACCACGGTGGGT 523
consensus_8738#5      TGTTTGATTGATT-TGTGTTTGATAGTTTATTTGC--ATGATC-TGTTACTATCAT---- 410
                      **   ***   **    * *    *  *    *    * *                    

consensus_8738#0      G-TGCGTCC---CGTGCAATAAGGGTACATTTTCGGGCGTTTTTGTTTTCGTTTTTGCTT 883
consensus_8738#3      G-TGGCTCC---CGTGCAATAAGGGT---------------------------------- 670
consensus_8738#2      GGTGCCTCC---CGTGCAATAAGGTTACATTTTCGTGCGTTATTATTGTTTCATTTTGAT 488
consensus_8738#1      A-TGCCTTAG-CTA-ACAAAAAAGCCCC-AATTTTTAATGC-TAACACCTCTCTC-TCTA 483
consensus_8738#4      A-TGCCTTAGGCTAGACAAAAAAGCCCCCNATTTTTAATGCGTAACACCTCTCTCGTCTA 582
consensus_8738#5      --TTCCTTA---CATGCCATACAGTCTTAATAACTT------------------------ 441
                        *   *         * * *  *                                    

consensus_8738#0      CATTTT----------GATGAATGAGAGAGAGAGAGAAAGAGAGCCAGCGATTGAAGTGA 933
consensus_8738#3      ------------------------------------------------------------
consensus_8738#2      GAATGAAAGAGAGAGAGAGAGANGAGAGAGAGTGAGAAAGAGAGCCAGCGATTGAAGTTT 548
consensus_8738#1      CACCCCGTTA-CTTCAGCTAATTGTTGGTCAGAATTTAAACACCCCGATAATAACCCCGA 542
consensus_8738#4      AACCCGGTTAACTTCAGNTAAT-------------------------------------- 604
consensus_8738#5      ------------------------------------------------------------
                                                                                  

consensus_8738#0      TTGAACGTTAATACCGTCGGTCG-TCTAGCGCTTGGTTGAACGTTTGGTTGTTCCTTTTG 992
consensus_8738#3      ------------------------------------------------------------
consensus_8738#2      TGANACGTTAATACCGTCTGTCGATCTGGCGCTTGGTTGAACGTAATGGTATTGTACCCT 608
consensus_8738#1      TAATAGTTGTTGGACGCTAATTGATAATGATAACGTTTGGTTAGCGAGAACAGGAGAGAG 602
consensus_8738#4      ------------------------------------------------------------
consensus_8738#5      ------------------------------------------------------------
                                                                                  

consensus_8738#0      GAGTGAATGAGGTGTTTGTGGCGGTGTGACCTTGT------------------------- 1027
consensus_8738#3      ------------------------------------------------------------
consensus_8738#2      CTTCNTGGAGGTGAATTGACGCGTNGTAACTTGTAGTGCANGTNGATGGCCCCTTGCTGG 668
consensus_8738#1      AGAAAGAGAAACGAATGTATGTTTGTATGTGTGTGTGTTGCGTGCGTGCGTGTATGTTGT 662
consensus_8738#4      ------------------------------------------------------------
consensus_8738#5      ------------------------------------------------------------
                                                                                  

consensus_8738#0      ------------------------------------------------------------
consensus_8738#3      ------------------------------------------------------------
consensus_8738#2      CCACCGGGANNNAACAGGTGTTAAACCGTCTCT--------------------------- 701
consensus_8738#1      TCAATTTGTGCAATCGAGATTCTGTAAAATATACGTGCTCAAAAAAGCGAAGTCTGTACA 722
consensus_8738#4      ------------------------------------------------------------
consensus_8738#5      ------------------------------------------------------------
                                                                                  

consensus_8738#0      ---------
consensus_8738#3      ---------
consensus_8738#2      ---------
consensus_8738#1      TAACAAAAA 731
consensus_8738#4      ---------
consensus_8738#5      ---------
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)