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Anopheles gambiae
cluster # 874 cluster # 874       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_874#0 length = 1044 sequences # 1  
consensus_874#1 length = 633 sequences # 1  

consensusID : consensus_874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1044
fasta sequence
                              [GATNGCCGAGGTTATCTCTGGGTCAGCAATATAGCAGAAACAAAAGTTATAAAACAAAAGGGTAAACGCAACATACAATAATGGACAAACGGGAAAAGTTTGTAACANAAAACAACATCAGTGAAACAAAGATGGTTAAGATAGTTGAGCAAAGCGAAACAGTGTATTAAACGAGGAAAAAAAACACATAAACACACACACACTACTCACCGAAAGTCGAAGAACTGGANGCNCACATTTGAAGGAAACATTTGTAAGTAACCGTTNCAGGGATCGTCCNGTAGCTTAAGCAGAGACGAGAGAGCNGAGAGAGAGACGACGAACAGAGGCAANTNTGTTCTNGGAACATATNCCCTACTGGCGACAGACTATACCCAGGAACATNACACGCACGTANATATNCATACTAACCCGNATAGCCCACAGCGAAAAGTTACGAGCTACCGNCGGTTGTTAAACTATGCGAACAAACCGNATAGAACGCGGGCAATCCTGACTCCGGACACGGTCAACAGAAGGACCACNCCACGACCACCGGGCACACGAGGGAANACGCATGCCCGCAACACGCNGCACGCCANGGCAACAGCNACCGNCNCCCCAANCCNCCACCGGNGCCAGGCAAAAACACAGGCAGGCCNCCGACANGAGAACACGACACAGCGCCANCGCACGGCACCCACAACGGGCCAGAGACNACCGAACAAACAAAAANCAGAGAGTAAANGNNAAGATAAATGGGGCTAGGCCGCACCCACCAGANACATNAACNNNGGNATAAGANATGNAGCGCCCAGAATTGCACAACNACNNNACCANTNAAAACATGGGCATNAAACGCAGGNANAACCNAANACCGCGAAAANANAANCCAAACAACCCANNNNACCCCCCNACCACAGGCGACACACNCNAAGGACACCACAACACCAACANACCACACNAGCCGNCNGACCACCGACCCCCCNCAACCNANACATCCNCGANCCCNCGCTCCGCACACCCANACACNGCCCCCGAGCCCNGGCGACAACCACACGCGGC]

[+] EMBL AL695831             [GATNGCCGAGGTTATCTCTGGGTCAGCAATATAGCAGAAACAAAAGTTATAAAACAAAAGGGTAAACGCAACATACAATAATGGACAAACGGGAAAAGTTTGTAACANAAAACAACATCAGTGAAACAAAGATGGTTAAGATAGTTGAGCAAAGCGAAACAGTGTATTAAACGAGGAAAAAAAACACATAAACACACACACACTACTCACCGAAAGTCGAAGAACTGGANGCNCACATTTGAAGGAAACATTTGTAAGTAACCGTTNCAGGGATCGTCCNGTAGCTTAAGCAGAGACGAGAGAGCNGAGAGAGAGACGACGAACAGAGGCAANTNTGTTCTNGGAACATATNCCCTACTGGCGACAGACTATACCCAGGAACATNACACGCACGTANATATNCATACTAACCCGNATAGCCCACAGCGAAAAGTTACGAGCTACCGNCGGTTGTTAAACTATGCGAACAAACCGNATAGAACGCGGGCAATCCTGACTCCGGACACGGTCAACAGAAGGACCACNCCACGACCACCGGGCACACGAGGGAANACGCATGCCCGCAACACGCNGCACGCCANGGCAACAGCNACCGNCNCCCCAANCCNCCACCGGNGCCAGGCAAAAACACAGGCAGGCCNCCGACANGAGAACACGACACAGCGCCANCGCACGGCACCCACAACGGGCCAGAGACNACCGAACAAACAAAAANCAGAGAGTAAANGNNAAGATAAATGGGGCTAGGCCGCACCCACCAGANACATNAACNNNGGNATAAGANATGNAGCGCCCAGAATTGCACAACNACNNNACCANTNAAAACATGGGCATNAAACGCAGGNANAACCNAANACCGCGAAAANANAANCCAAACAACCCANNNNACCCCCCNACCACAGGCGACACACNCNAAGGACACCACAACACCAACANACCACACNAGCCGNCNGACCACCGACCCCCCNCAACCNANACATCCNCGANCCCNCGCTCCGCACACCCANACACNGCCCCCGAGCCCNGGCGACAACCACACGCGGC]


>consensus_874#0 GATNGCCGAGGTTATCTCTGGGTCAGCAATATAGCAGAAACAAAAGTTATAAAACAAAAG GGTAAACGCAACATACAATAATGGACAAACGGGAAAAGTTTGTAACANAAAACAACATCA GTGAAACAAAGATGGTTAAGATAGTTGAGCAAAGCGAAACAGTGTATTAAACGAGGAAAA AAAACACATAAACACACACACACTACTCACCGAAAGTCGAAGAACTGGANGCNCACATTT GAAGGAAACATTTGTAAGTAACCGTTNCAGGGATCGTCCNGTAGCTTAAGCAGAGACGAG AGAGCNGAGAGAGAGACGACGAACAGAGGCAANTNTGTTCTNGGAACATATNCCCTACTG GCGACAGACTATACCCAGGAACATNACACGCACGTANATATNCATACTAACCCGNATAGC CCACAGCGAAAAGTTACGAGCTACCGNCGGTTGTTAAACTATGCGAACAAACCGNATAGA ACGCGGGCAATCCTGACTCCGGACACGGTCAACAGAAGGACCACNCCACGACCACCGGGC ACACGAGGGAANACGCATGCCCGCAACACGCNGCACGCCANGGCAACAGCNACCGNCNCC CCAANCCNCCACCGGNGCCAGGCAAAAACACAGGCAGGCCNCCGACANGAGAACACGACA CAGCGCCANCGCACGGCACCCACAACGGGCCAGAGACNACCGAACAAACAAAAANCAGAG AGTAAANGNNAAGATAAATGGGGCTAGGCCGCACCCACCAGANACATNAACNNNGGNATA AGANATGNAGCGCCCAGAATTGCACAACNACNNNACCANTNAAAACATGGGCATNAAACG CAGGNANAACCNAANACCGCGAAAANANAANCCAAACAACCCANNNNACCCCCCNACCAC AGGCGACACACNCNAAGGACACCACAACACCAACANACCACACNAGCCGNCNGACCACCG ACCCCCCNCAACCNANACATCCNCGANCCCNCGCTCCGCACACCCANACACNGCCCCCGA GCCCNGGCGACAACCACACGCGGC



consensusID : consensus_874#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence
                              [CAAACTTTTCCCGTTTTCCATTATTGTATGTTGCGTTTACCCTTTTGTTTTATAACTTTTGTTTTCTGCTATATTGCTGGACCCAGAGATGAATGTGTGTGTATGTGTGTTCTATAGCTGATTTTCCTTGTAAATGTGTGTGTGTTCCACGGATGTACATCATACTATAATGCCAATCTAAGGTCCCATCCGCACATTTATTTGATCCCTTGTACGGCGGGGGGACATTGGCGGCATGAAGAGTACAGACGGATCGTGGTTTTGTGTTCTTGCAGACTGCAGATGGGAATCATACATTAAACAACAAACAAGACACTTTCCTCTTCATAATTAAACATAGATAAAAATGCCAAAAAGGTAGAATGTTTAATGTAGCAACAAATACATCAGAGTTTGCAGTTTGCTCTCTCCCTGCCGCCGTGCGTTTTTGAAACGAGTATGACGACCGTACAGGGTGGAGACGTTCCCACTGCGATCAACTGCACTTTTTGTATCACGGTAGCGTATAGTATTCAGTTTTTAAAAAATATATGTATGTAAAGAATTCCATCACATAGTGAAAAAAGATAAAGTGTCACGAGCACCCGTGTACATCATTAATTAACTAATACAATCTTGCGACCGCATAAAATC]

[+] EMBL AGA281556            [CAAACTTTTCCCGTTTTCCATTATTGTATGTTGCGTTTACCCTTTTGTTTTATAACTTTTGTTTTCTGCTATATTGCTGGACCCAGAGATGAATGTGTGTGTATGTGTGTTCTATAGCTGATTTTCCTTGTAAATGTGTGTGTGTTCCACGGATGTACATCATACTATAATGCCAATCTAAGGTCCCATCCGCACATTTATTTGATCCCTTGTACGGCGGGGGGACATTGGCGGCATGAAGAGTACAGACGGATCGTGGTTTTGTGTTCTTGCAGACTGCAGATGGGAATCATACATTAAACAACAAACAAGACACTTTCCTCTTCATAATTAAACATAGATAAAAATGCCAAAAAGGTAGAATGTTTAATGTAGCAACAAATACATCAGAGTTTGCAGTTTGCTCTCTCCCTGCCGCCGTGCGTTTTTGAAACGAGTATGACGACCGTACAGGGTGGAGACGTTCCCACTGCGATCAACTGCACTTTTTGTATCACGGTAGCGTATAGTATTCAGTTTTTAAAAAATATATGTATGTAAAGAATTCCATCACATAGTGAAAAAAGATAAAGTGTCACGAGCACCCGTGTACATCATTAATTAACTAATACAATCTTGCGACCGCATAAAATC]


>consensus_874#1 CAAACTTTTCCCGTTTTCCATTATTGTATGTTGCGTTTACCCTTTTGTTTTATAACTTTT GTTTTCTGCTATATTGCTGGACCCAGAGATGAATGTGTGTGTATGTGTGTTCTATAGCTG ATTTTCCTTGTAAATGTGTGTGTGTTCCACGGATGTACATCATACTATAATGCCAATCTA AGGTCCCATCCGCACATTTATTTGATCCCTTGTACGGCGGGGGGACATTGGCGGCATGAA GAGTACAGACGGATCGTGGTTTTGTGTTCTTGCAGACTGCAGATGGGAATCATACATTAA ACAACAAACAAGACACTTTCCTCTTCATAATTAAACATAGATAAAAATGCCAAAAAGGTA GAATGTTTAATGTAGCAACAAATACATCAGAGTTTGCAGTTTGCTCTCTCCCTGCCGCCG TGCGTTTTTGAAACGAGTATGACGACCGTACAGGGTGGAGACGTTCCCACTGCGATCAAC TGCACTTTTTGTATCACGGTAGCGTATAGTATTCAGTTTTTAAAAAATATATGTATGTAA AGAATTCCATCACATAGTGAAAAAAGATAAAGTGTCACGAGCACCCGTGTACATCATTAA TTAACTAATACAATCTTGCGACCGCATAAAATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_874#0      GATNGCCGAGGTTATCTCTGGGTCAGCAATATAGCAGAAACAAAAGTTATAAAACAAAAG 60
consensus_874#1      ------------------------------------------------------------
                                                                                 

consensus_874#0      GGTAAACGCAACATACAATAATGGACAAACGGGAAAAGTTTGTAACANAAAACAACATCA 120
consensus_874#1      ------------------------------------------------------------
                                                                                 

consensus_874#0      GTGAAACAAAGATGGTTAAGATAGTTGAGCAAAGCGAAACAGTGTATTAAACGAGGAAAA 180
consensus_874#1      ------------------------------------------------------------
                                                                                 

consensus_874#0      AAAACACATAAACACACACACACTACTCACCGAAAGTCGAAGAACTGGANGCNCACATTT 240
consensus_874#1      ------------------------------------------------------------
                                                                                 

consensus_874#0      GAAGGAAACATTTGTAAGTAACCGTTNCAGGGATCGTCCNGTAGCTTAAGCAGAGACGAG 300
consensus_874#1      ------------------------------------------------------------
                                                                                 

consensus_874#0      AGAGCNGAGAGAGAGACGACGAACAGAGGCAANTNTGTTCTNGGAACATATNCCCTACTG 360
consensus_874#1      -----------------------------CAAACTTTTCCCGT-----TTTCCATTATTG 26
                                                  ***   * * *        * * *  ** **

consensus_874#0      GCGACAGACTATACCCAGGAACATNACACGCACGTANATATNCATACTAACCCGNATAGC 420
consensus_874#1      TATGTTGCGTTTACCCTTTTGTTTTATA---ACTTTTGTTTTC-TGCTATATTGCTGGAC 82
                           *  * *****       * * *   ** *   * * * * ***    *     *

consensus_874#0      CCACAGCGAAAAGT-----TACGAGCTACCGNCGGTTGTTAAACTATGCGAACAAACCGN 475
consensus_874#1      CCAGAGATGAATGTGTGTGTATGTGTGTTCTATAGCTGATTTTCCTTGTAAATGTGT-GT 141
                     *** **   ** **     ** * *    *    * ** *   *  **  **      * 

consensus_874#0      ATAGAACGCGGGCAATCCTGACTCCGGACACGGTCAACAGAAGGACCACNCCACGACCAC 535
consensus_874#1      GTGTTCCACGGATGTACATCATACT--ATAATGCCAATCTAAGGTCCCATCCGCACATTT 199
                      *    * ***     * * *  *   * *  * ***   **** **   ** *      

consensus_874#0      CGGGCACACGAGGGAANACGCATGCCCGCAACACGCNGCACGCCANGGCAACAGCNACCG 595
consensus_874#1      ATTTGATCCCTTGTACGGCGGGGGGACATTG---GCGGCATGAAGAGTACAGACGGATCG 256
                          *  *   * *   **   *  *       ** *** *    *   * *   * **

consensus_874#0      NCNCCCCAANCCNCCACCGGNGCCAGGCAAAAACACAGGCAGGCCNCCGACANGAGAACA 655
consensus_874#1      TGGTTTTGTGTTCTTGCAGACTGCAGATGGGAAT-----CATACATTAAACAACA-AACA 310
                                     * *    ***     **      **  *     ***  * ****

consensus_874#0      CGACACAGCGCCANCGCACGGCACCCACAACGGGCCAGAGACNACCGAACAAACAAAAAN 715
consensus_874#1      AGACAC----TTTCCTCTTCATAATTA-AACATAGATAAAAATGCCAAAAAGGTAGAATG 365
                      *****        * *     *   * ***       * *   ** ** *   * **  

consensus_874#0      CAGAGAGTAAANGNNAAGATAAATGGGGCT--AGGCCGCACCCACCAGANACATNAACNN 773
consensus_874#1      TTTAATGTAGCAACAAATACATCAGAGTTTGCAGTTTGCTCTCTCCCTGCCGCCGTGCGT 425
                        *  ***      ** * *   * *  *  **   ** * * **           *  

consensus_874#0      NGGNATAAGANATGNAGCGCCCAGAATTGCACAACNACNNNACCANTNAAAACATGGGCA 833
consensus_874#1      TTTTGAAACGAGTATGACGACC-GTACAGGGTGGAGACGTTCCCACTGCGATCAACTGCA 484
                           **    *    ** ** * *  *       **    *** *   * **   ***

consensus_874#0      TNAAACGCA----GGNANAACCNAANACCGCGAAAANANAANCCAAACA-ACCCANNNNA 888
consensus_874#1      CTTTTTGTATCACGGTAGCGTATAGTATTCAGTTTTTAAAAAATATATGTATGTAAAGAA 544
                           * *    ** *      *  *    *     * **   * *   *   *    *

consensus_874#0      CCCCCCNACCACAGGCGACACACNCNAAGGACACCACAACACCAACANACCACACNAGCC 948
consensus_874#1      TTCCATCAC-ATAGTGAAAAAAGATAAAGTGTCACG-AGCACCCGTGTACATCATTAATT 602
                       **   ** * **   * * *    ***     *  * ****     **  **  *   

consensus_874#0      GNCNGACCACCGACCCCCCNCAACCNANACATCCNCGANCCCNCGCTCCGCACACCCANA 1008
consensus_874#1      AACTAAT-ACAATCTTGCGACCGCATAAA-ATC--------------------------- 633
                       *  *  **   *   *  *  *  * * ***                           

consensus_874#0      CACNGCCCCCGAGCCCNGGCGACAACCACACGCGGC 1044
consensus_874#1      ------------------------------------
                                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)