These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1044 fasta sequence [GATNGCCGAGGTTATCTCTGGGTCAGCAATATAGCAGAAACAAAAGTTATAAAACAAAAGGGTAAACGCAACATACAATAATGGACAAACGGGAAAAGTTTGTAACANAAAACAACATCAGTGAAACAAAGATGGTTAAGATAGTTGAGCAAAGCGAAACAGTGTATTAAACGAGGAAAAAAAACACATAAACACACACACACTACTCACCGAAAGTCGAAGAACTGGANGCNCACATTTGAAGGAAACATTTGTAAGTAACCGTTNCAGGGATCGTCCNGTAGCTTAAGCAGAGACGAGAGAGCNGAGAGAGAGACGACGAACAGAGGCAANTNTGTTCTNGGAACATATNCCCTACTGGCGACAGACTATACCCAGGAACATNACACGCACGTANATATNCATACTAACCCGNATAGCCCACAGCGAAAAGTTACGAGCTACCGNCGGTTGTTAAACTATGCGAACAAACCGNATAGAACGCGGGCAATCCTGACTCCGGACACGGTCAACAGAAGGACCACNCCACGACCACCGGGCACACGAGGGAANACGCATGCCCGCAACACGCNGCACGCCANGGCAACAGCNACCGNCNCCCCAANCCNCCACCGGNGCCAGGCAAAAACACAGGCAGGCCNCCGACANGAGAACACGACACAGCGCCANCGCACGGCACCCACAACGGGCCAGAGACNACCGAACAAACAAAAANCAGAGAGTAAANGNNAAGATAAATGGGGCTAGGCCGCACCCACCAGANACATNAACNNNGGNATAAGANATGNAGCGCCCAGAATTGCACAACNACNNNACCANTNAAAACATGGGCATNAAACGCAGGNANAACCNAANACCGCGAAAANANAANCCAAACAACCCANNNNACCCCCCNACCACAGGCGACACACNCNAAGGACACCACAACACCAACANACCACACNAGCCGNCNGACCACCGACCCCCCNCAACCNANACATCCNCGANCCCNCGCTCCGCACACCCANACACNGCCCCCGAGCCCNGGCGACAACCACACGCGGC] [+] EMBL AL695831 [GATNGCCGAGGTTATCTCTGGGTCAGCAATATAGCAGAAACAAAAGTTATAAAACAAAAGGGTAAACGCAACATACAATAATGGACAAACGGGAAAAGTTTGTAACANAAAACAACATCAGTGAAACAAAGATGGTTAAGATAGTTGAGCAAAGCGAAACAGTGTATTAAACGAGGAAAAAAAACACATAAACACACACACACTACTCACCGAAAGTCGAAGAACTGGANGCNCACATTTGAAGGAAACATTTGTAAGTAACCGTTNCAGGGATCGTCCNGTAGCTTAAGCAGAGACGAGAGAGCNGAGAGAGAGACGACGAACAGAGGCAANTNTGTTCTNGGAACATATNCCCTACTGGCGACAGACTATACCCAGGAACATNACACGCACGTANATATNCATACTAACCCGNATAGCCCACAGCGAAAAGTTACGAGCTACCGNCGGTTGTTAAACTATGCGAACAAACCGNATAGAACGCGGGCAATCCTGACTCCGGACACGGTCAACAGAAGGACCACNCCACGACCACCGGGCACACGAGGGAANACGCATGCCCGCAACACGCNGCACGCCANGGCAACAGCNACCGNCNCCCCAANCCNCCACCGGNGCCAGGCAAAAACACAGGCAGGCCNCCGACANGAGAACACGACACAGCGCCANCGCACGGCACCCACAACGGGCCAGAGACNACCGAACAAACAAAAANCAGAGAGTAAANGNNAAGATAAATGGGGCTAGGCCGCACCCACCAGANACATNAACNNNGGNATAAGANATGNAGCGCCCAGAATTGCACAACNACNNNACCANTNAAAACATGGGCATNAAACGCAGGNANAACCNAANACCGCGAAAANANAANCCAAACAACCCANNNNACCCCCCNACCACAGGCGACACACNCNAAGGACACCACAACACCAACANACCACACNAGCCGNCNGACCACCGACCCCCCNCAACCNANACATCCNCGANCCCNCGCTCCGCACACCCANACACNGCCCCCGAGCCCNGGCGACAACCACACGCGGC] consensusID : consensus_874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CAAACTTTTCCCGTTTTCCATTATTGTATGTTGCGTTTACCCTTTTGTTTTATAACTTTTGTTTTCTGCTATATTGCTGGACCCAGAGATGAATGTGTGTGTATGTGTGTTCTATAGCTGATTTTCCTTGTAAATGTGTGTGTGTTCCACGGATGTACATCATACTATAATGCCAATCTAAGGTCCCATCCGCACATTTATTTGATCCCTTGTACGGCGGGGGGACATTGGCGGCATGAAGAGTACAGACGGATCGTGGTTTTGTGTTCTTGCAGACTGCAGATGGGAATCATACATTAAACAACAAACAAGACACTTTCCTCTTCATAATTAAACATAGATAAAAATGCCAAAAAGGTAGAATGTTTAATGTAGCAACAAATACATCAGAGTTTGCAGTTTGCTCTCTCCCTGCCGCCGTGCGTTTTTGAAACGAGTATGACGACCGTACAGGGTGGAGACGTTCCCACTGCGATCAACTGCACTTTTTGTATCACGGTAGCGTATAGTATTCAGTTTTTAAAAAATATATGTATGTAAAGAATTCCATCACATAGTGAAAAAAGATAAAGTGTCACGAGCACCCGTGTACATCATTAATTAACTAATACAATCTTGCGACCGCATAAAATC] [+] EMBL AGA281556 [CAAACTTTTCCCGTTTTCCATTATTGTATGTTGCGTTTACCCTTTTGTTTTATAACTTTTGTTTTCTGCTATATTGCTGGACCCAGAGATGAATGTGTGTGTATGTGTGTTCTATAGCTGATTTTCCTTGTAAATGTGTGTGTGTTCCACGGATGTACATCATACTATAATGCCAATCTAAGGTCCCATCCGCACATTTATTTGATCCCTTGTACGGCGGGGGGACATTGGCGGCATGAAGAGTACAGACGGATCGTGGTTTTGTGTTCTTGCAGACTGCAGATGGGAATCATACATTAAACAACAAACAAGACACTTTCCTCTTCATAATTAAACATAGATAAAAATGCCAAAAAGGTAGAATGTTTAATGTAGCAACAAATACATCAGAGTTTGCAGTTTGCTCTCTCCCTGCCGCCGTGCGTTTTTGAAACGAGTATGACGACCGTACAGGGTGGAGACGTTCCCACTGCGATCAACTGCACTTTTTGTATCACGGTAGCGTATAGTATTCAGTTTTTAAAAAATATATGTATGTAAAGAATTCCATCACATAGTGAAAAAAGATAAAGTGTCACGAGCACCCGTGTACATCATTAATTAACTAATACAATCTTGCGACCGCATAAAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_874#0 GATNGCCGAGGTTATCTCTGGGTCAGCAATATAGCAGAAACAAAAGTTATAAAACAAAAG 60 consensus_874#1 ------------------------------------------------------------ consensus_874#0 GGTAAACGCAACATACAATAATGGACAAACGGGAAAAGTTTGTAACANAAAACAACATCA 120 consensus_874#1 ------------------------------------------------------------ consensus_874#0 GTGAAACAAAGATGGTTAAGATAGTTGAGCAAAGCGAAACAGTGTATTAAACGAGGAAAA 180 consensus_874#1 ------------------------------------------------------------ consensus_874#0 AAAACACATAAACACACACACACTACTCACCGAAAGTCGAAGAACTGGANGCNCACATTT 240 consensus_874#1 ------------------------------------------------------------ consensus_874#0 GAAGGAAACATTTGTAAGTAACCGTTNCAGGGATCGTCCNGTAGCTTAAGCAGAGACGAG 300 consensus_874#1 ------------------------------------------------------------ consensus_874#0 AGAGCNGAGAGAGAGACGACGAACAGAGGCAANTNTGTTCTNGGAACATATNCCCTACTG 360 consensus_874#1 -----------------------------CAAACTTTTCCCGT-----TTTCCATTATTG 26 *** * * * * * * ** ** consensus_874#0 GCGACAGACTATACCCAGGAACATNACACGCACGTANATATNCATACTAACCCGNATAGC 420 consensus_874#1 TATGTTGCGTTTACCCTTTTGTTTTATA---ACTTTTGTTTTC-TGCTATATTGCTGGAC 82 * * ***** * * * ** * * * * * *** * * consensus_874#0 CCACAGCGAAAAGT-----TACGAGCTACCGNCGGTTGTTAAACTATGCGAACAAACCGN 475 consensus_874#1 CCAGAGATGAATGTGTGTGTATGTGTGTTCTATAGCTGATTTTCCTTGTAAATGTGT-GT 141 *** ** ** ** ** * * * * ** * * ** ** * consensus_874#0 ATAGAACGCGGGCAATCCTGACTCCGGACACGGTCAACAGAAGGACCACNCCACGACCAC 535 consensus_874#1 GTGTTCCACGGATGTACATCATACT--ATAATGCCAATCTAAGGTCCCATCCGCACATTT 199 * * *** * * * * * * * *** **** ** ** * consensus_874#0 CGGGCACACGAGGGAANACGCATGCCCGCAACACGCNGCACGCCANGGCAACAGCNACCG 595 consensus_874#1 ATTTGATCCCTTGTACGGCGGGGGGACATTG---GCGGCATGAAGAGTACAGACGGATCG 256 * * * * ** * * ** *** * * * * * ** consensus_874#0 NCNCCCCAANCCNCCACCGGNGCCAGGCAAAAACACAGGCAGGCCNCCGACANGAGAACA 655 consensus_874#1 TGGTTTTGTGTTCTTGCAGACTGCAGATGGGAAT-----CATACATTAAACAACA-AACA 310 * * *** ** ** * *** * **** consensus_874#0 CGACACAGCGCCANCGCACGGCACCCACAACGGGCCAGAGACNACCGAACAAACAAAAAN 715 consensus_874#1 AGACAC----TTTCCTCTTCATAATTA-AACATAGATAAAAATGCCAAAAAGGTAGAATG 365 ***** * * * * *** * * ** ** * * ** consensus_874#0 CAGAGAGTAAANGNNAAGATAAATGGGGCT--AGGCCGCACCCACCAGANACATNAACNN 773 consensus_874#1 TTTAATGTAGCAACAAATACATCAGAGTTTGCAGTTTGCTCTCTCCCTGCCGCCGTGCGT 425 * *** ** * * * * * ** ** * * ** * consensus_874#0 NGGNATAAGANATGNAGCGCCCAGAATTGCACAACNACNNNACCANTNAAAACATGGGCA 833 consensus_874#1 TTTTGAAACGAGTATGACGACC-GTACAGGGTGGAGACGTTCCCACTGCGATCAACTGCA 484 ** * ** ** * * * ** *** * * ** *** consensus_874#0 TNAAACGCA----GGNANAACCNAANACCGCGAAAANANAANCCAAACA-ACCCANNNNA 888 consensus_874#1 CTTTTTGTATCACGGTAGCGTATAGTATTCAGTTTTTAAAAAATATATGTATGTAAAGAA 544 * * ** * * * * * ** * * * * * consensus_874#0 CCCCCCNACCACAGGCGACACACNCNAAGGACACCACAACACCAACANACCACACNAGCC 948 consensus_874#1 TTCCATCAC-ATAGTGAAAAAAGATAAAGTGTCACG-AGCACCCGTGTACATCATTAATT 602 ** ** * ** * * * *** * * **** ** ** * consensus_874#0 GNCNGACCACCGACCCCCCNCAACCNANACATCCNCGANCCCNCGCTCCGCACACCCANA 1008 consensus_874#1 AACTAAT-ACAATCTTGCGACCGCATAAA-ATC--------------------------- 633 * * ** * * * * * * *** consensus_874#0 CACNGCCCCCGAGCCCNGGCGACAACCACACGCGGC 1044 consensus_874#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||