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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1044 fasta sequence
[GATNGCCGAGGTTATCTCTGGGTCAGCAATATAGCAGAAACAAAAGTTATAAAACAAAAGGGTAAACGCAACATACAATAATGGACAAACGGGAAAAGTTTGTAACANAAAACAACATCAGTGAAACAAAGATGGTTAAGATAGTTGAGCAAAGCGAAACAGTGTATTAAACGAGGAAAAAAAACACATAAACACACACACACTACTCACCGAAAGTCGAAGAACTGGANGCNCACATTTGAAGGAAACATTTGTAAGTAACCGTTNCAGGGATCGTCCNGTAGCTTAAGCAGAGACGAGAGAGCNGAGAGAGAGACGACGAACAGAGGCAANTNTGTTCTNGGAACATATNCCCTACTGGCGACAGACTATACCCAGGAACATNACACGCACGTANATATNCATACTAACCCGNATAGCCCACAGCGAAAAGTTACGAGCTACCGNCGGTTGTTAAACTATGCGAACAAACCGNATAGAACGCGGGCAATCCTGACTCCGGACACGGTCAACAGAAGGACCACNCCACGACCACCGGGCACACGAGGGAANACGCATGCCCGCAACACGCNGCACGCCANGGCAACAGCNACCGNCNCCCCAANCCNCCACCGGNGCCAGGCAAAAACACAGGCAGGCCNCCGACANGAGAACACGACACAGCGCCANCGCACGGCACCCACAACGGGCCAGAGACNACCGAACAAACAAAAANCAGAGAGTAAANGNNAAGATAAATGGGGCTAGGCCGCACCCACCAGANACATNAACNNNGGNATAAGANATGNAGCGCCCAGAATTGCACAACNACNNNACCANTNAAAACATGGGCATNAAACGCAGGNANAACCNAANACCGCGAAAANANAANCCAAACAACCCANNNNACCCCCCNACCACAGGCGACACACNCNAAGGACACCACAACACCAACANACCACACNAGCCGNCNGACCACCGACCCCCCNCAACCNANACATCCNCGANCCCNCGCTCCGCACACCCANACACNGCCCCCGAGCCCNGGCGACAACCACACGCGGC]
[+] EMBL AL695831 [GATNGCCGAGGTTATCTCTGGGTCAGCAATATAGCAGAAACAAAAGTTATAAAACAAAAGGGTAAACGCAACATACAATAATGGACAAACGGGAAAAGTTTGTAACANAAAACAACATCAGTGAAACAAAGATGGTTAAGATAGTTGAGCAAAGCGAAACAGTGTATTAAACGAGGAAAAAAAACACATAAACACACACACACTACTCACCGAAAGTCGAAGAACTGGANGCNCACATTTGAAGGAAACATTTGTAAGTAACCGTTNCAGGGATCGTCCNGTAGCTTAAGCAGAGACGAGAGAGCNGAGAGAGAGACGACGAACAGAGGCAANTNTGTTCTNGGAACATATNCCCTACTGGCGACAGACTATACCCAGGAACATNACACGCACGTANATATNCATACTAACCCGNATAGCCCACAGCGAAAAGTTACGAGCTACCGNCGGTTGTTAAACTATGCGAACAAACCGNATAGAACGCGGGCAATCCTGACTCCGGACACGGTCAACAGAAGGACCACNCCACGACCACCGGGCACACGAGGGAANACGCATGCCCGCAACACGCNGCACGCCANGGCAACAGCNACCGNCNCCCCAANCCNCCACCGGNGCCAGGCAAAAACACAGGCAGGCCNCCGACANGAGAACACGACACAGCGCCANCGCACGGCACCCACAACGGGCCAGAGACNACCGAACAAACAAAAANCAGAGAGTAAANGNNAAGATAAATGGGGCTAGGCCGCACCCACCAGANACATNAACNNNGGNATAAGANATGNAGCGCCCAGAATTGCACAACNACNNNACCANTNAAAACATGGGCATNAAACGCAGGNANAACCNAANACCGCGAAAANANAANCCAAACAACCCANNNNACCCCCCNACCACAGGCGACACACNCNAAGGACACCACAACACCAACANACCACACNAGCCGNCNGACCACCGACCCCCCNCAACCNANACATCCNCGANCCCNCGCTCCGCACACCCANACACNGCCCCCGAGCCCNGGCGACAACCACACGCGGC]
consensusID : consensus_874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CAAACTTTTCCCGTTTTCCATTATTGTATGTTGCGTTTACCCTTTTGTTTTATAACTTTTGTTTTCTGCTATATTGCTGGACCCAGAGATGAATGTGTGTGTATGTGTGTTCTATAGCTGATTTTCCTTGTAAATGTGTGTGTGTTCCACGGATGTACATCATACTATAATGCCAATCTAAGGTCCCATCCGCACATTTATTTGATCCCTTGTACGGCGGGGGGACATTGGCGGCATGAAGAGTACAGACGGATCGTGGTTTTGTGTTCTTGCAGACTGCAGATGGGAATCATACATTAAACAACAAACAAGACACTTTCCTCTTCATAATTAAACATAGATAAAAATGCCAAAAAGGTAGAATGTTTAATGTAGCAACAAATACATCAGAGTTTGCAGTTTGCTCTCTCCCTGCCGCCGTGCGTTTTTGAAACGAGTATGACGACCGTACAGGGTGGAGACGTTCCCACTGCGATCAACTGCACTTTTTGTATCACGGTAGCGTATAGTATTCAGTTTTTAAAAAATATATGTATGTAAAGAATTCCATCACATAGTGAAAAAAGATAAAGTGTCACGAGCACCCGTGTACATCATTAATTAACTAATACAATCTTGCGACCGCATAAAATC]
[+] EMBL AGA281556 [CAAACTTTTCCCGTTTTCCATTATTGTATGTTGCGTTTACCCTTTTGTTTTATAACTTTTGTTTTCTGCTATATTGCTGGACCCAGAGATGAATGTGTGTGTATGTGTGTTCTATAGCTGATTTTCCTTGTAAATGTGTGTGTGTTCCACGGATGTACATCATACTATAATGCCAATCTAAGGTCCCATCCGCACATTTATTTGATCCCTTGTACGGCGGGGGGACATTGGCGGCATGAAGAGTACAGACGGATCGTGGTTTTGTGTTCTTGCAGACTGCAGATGGGAATCATACATTAAACAACAAACAAGACACTTTCCTCTTCATAATTAAACATAGATAAAAATGCCAAAAAGGTAGAATGTTTAATGTAGCAACAAATACATCAGAGTTTGCAGTTTGCTCTCTCCCTGCCGCCGTGCGTTTTTGAAACGAGTATGACGACCGTACAGGGTGGAGACGTTCCCACTGCGATCAACTGCACTTTTTGTATCACGGTAGCGTATAGTATTCAGTTTTTAAAAAATATATGTATGTAAAGAATTCCATCACATAGTGAAAAAAGATAAAGTGTCACGAGCACCCGTGTACATCATTAATTAACTAATACAATCTTGCGACCGCATAAAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_874#0 GATNGCCGAGGTTATCTCTGGGTCAGCAATATAGCAGAAACAAAAGTTATAAAACAAAAG 60
consensus_874#1 ------------------------------------------------------------
consensus_874#0 GGTAAACGCAACATACAATAATGGACAAACGGGAAAAGTTTGTAACANAAAACAACATCA 120
consensus_874#1 ------------------------------------------------------------
consensus_874#0 GTGAAACAAAGATGGTTAAGATAGTTGAGCAAAGCGAAACAGTGTATTAAACGAGGAAAA 180
consensus_874#1 ------------------------------------------------------------
consensus_874#0 AAAACACATAAACACACACACACTACTCACCGAAAGTCGAAGAACTGGANGCNCACATTT 240
consensus_874#1 ------------------------------------------------------------
consensus_874#0 GAAGGAAACATTTGTAAGTAACCGTTNCAGGGATCGTCCNGTAGCTTAAGCAGAGACGAG 300
consensus_874#1 ------------------------------------------------------------
consensus_874#0 AGAGCNGAGAGAGAGACGACGAACAGAGGCAANTNTGTTCTNGGAACATATNCCCTACTG 360
consensus_874#1 -----------------------------CAAACTTTTCCCGT-----TTTCCATTATTG 26
*** * * * * * * ** **
consensus_874#0 GCGACAGACTATACCCAGGAACATNACACGCACGTANATATNCATACTAACCCGNATAGC 420
consensus_874#1 TATGTTGCGTTTACCCTTTTGTTTTATA---ACTTTTGTTTTC-TGCTATATTGCTGGAC 82
* * ***** * * * ** * * * * * *** * *
consensus_874#0 CCACAGCGAAAAGT-----TACGAGCTACCGNCGGTTGTTAAACTATGCGAACAAACCGN 475
consensus_874#1 CCAGAGATGAATGTGTGTGTATGTGTGTTCTATAGCTGATTTTCCTTGTAAATGTGT-GT 141
*** ** ** ** ** * * * * ** * * ** ** *
consensus_874#0 ATAGAACGCGGGCAATCCTGACTCCGGACACGGTCAACAGAAGGACCACNCCACGACCAC 535
consensus_874#1 GTGTTCCACGGATGTACATCATACT--ATAATGCCAATCTAAGGTCCCATCCGCACATTT 199
* * *** * * * * * * * *** **** ** ** *
consensus_874#0 CGGGCACACGAGGGAANACGCATGCCCGCAACACGCNGCACGCCANGGCAACAGCNACCG 595
consensus_874#1 ATTTGATCCCTTGTACGGCGGGGGGACATTG---GCGGCATGAAGAGTACAGACGGATCG 256
* * * * ** * * ** *** * * * * * **
consensus_874#0 NCNCCCCAANCCNCCACCGGNGCCAGGCAAAAACACAGGCAGGCCNCCGACANGAGAACA 655
consensus_874#1 TGGTTTTGTGTTCTTGCAGACTGCAGATGGGAAT-----CATACATTAAACAACA-AACA 310
* * *** ** ** * *** * ****
consensus_874#0 CGACACAGCGCCANCGCACGGCACCCACAACGGGCCAGAGACNACCGAACAAACAAAAAN 715
consensus_874#1 AGACAC----TTTCCTCTTCATAATTA-AACATAGATAAAAATGCCAAAAAGGTAGAATG 365
***** * * * * *** * * ** ** * * **
consensus_874#0 CAGAGAGTAAANGNNAAGATAAATGGGGCT--AGGCCGCACCCACCAGANACATNAACNN 773
consensus_874#1 TTTAATGTAGCAACAAATACATCAGAGTTTGCAGTTTGCTCTCTCCCTGCCGCCGTGCGT 425
* *** ** * * * * * ** ** * * ** *
consensus_874#0 NGGNATAAGANATGNAGCGCCCAGAATTGCACAACNACNNNACCANTNAAAACATGGGCA 833
consensus_874#1 TTTTGAAACGAGTATGACGACC-GTACAGGGTGGAGACGTTCCCACTGCGATCAACTGCA 484
** * ** ** * * * ** *** * * ** ***
consensus_874#0 TNAAACGCA----GGNANAACCNAANACCGCGAAAANANAANCCAAACA-ACCCANNNNA 888
consensus_874#1 CTTTTTGTATCACGGTAGCGTATAGTATTCAGTTTTTAAAAAATATATGTATGTAAAGAA 544
* * ** * * * * * ** * * * * *
consensus_874#0 CCCCCCNACCACAGGCGACACACNCNAAGGACACCACAACACCAACANACCACACNAGCC 948
consensus_874#1 TTCCATCAC-ATAGTGAAAAAAGATAAAGTGTCACG-AGCACCCGTGTACATCATTAATT 602
** ** * ** * * * *** * * **** ** ** *
consensus_874#0 GNCNGACCACCGACCCCCCNCAACCNANACATCCNCGANCCCNCGCTCCGCACACCCANA 1008
consensus_874#1 AACTAAT-ACAATCTTGCGACCGCATAAA-ATC--------------------------- 633
* * ** * * * * * * ***
consensus_874#0 CACNGCCCCCGAGCCCNGGCGACAACCACACGCGGC 1044
consensus_874#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||