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Anopheles gambiae
cluster # 8788 cluster # 8788       Sequences # 12       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8788#0 length = 1168 sequences # 5  
consensus_8788#1 length = 964 sequences # 4  
consensus_8788#2 length = 587 sequences # 1  
consensus_8788#3 length = 333 sequences # 1  
consensus_8788#4 length = 287 sequences # 1  

consensusID : consensus_8788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1168
fasta sequence
                              [CGCTGCGCTCGAACTGCACCGACACGCCGTCGGTCACGCCGAGCCGCTGCTCGACCGACCGCAGCTTCTCCTCGAACTTGTTCACGTCCGCCACCGCCATGTGGAAGATGTTCGACTGCACCCGGCGCCCCTTCACGATCGCCCCGTCGTGCAGGATGATCGTCACCATCTCCATGTCCGGGTGGACCACCACCTCCTTCACCTCGCCGACCGCCAGCATGTGGTGGACGAACTCGTGCCAGCTGACGTAGCGCGTGGCCGACTCGGGCCGGTTGCGGGACGGCAGCACCATCGACAGGAAGCCGACCAGCAGGTAGATCGTGATCATCCAGATGAGCGTCTTCGTCACCACCGACATCATCTTCTCCTTGTCGTCCTCATCCTCATCTTTCTTGCGGTTTGGGTCGGACCCGTCNCGGTCCGGCGGCTTCTGGTTCGGGCCGCTCGGCTGCGCT-CCCTGC-GGCG-CCCGGTTGCCGCACGCCGTGTGCAGGTGGCGCGCGAACACGTACGCTGGGGATCGAGCCCGCATCGCACAGCATGCGCAGCAGGGCCCGCTGGTCGGCCTGCAGCTGCCGGAGCTGGCGCCGGGTCGGGGCGGGCTGTGTACCGCGCGGCACCCCGCTGCAAGCTCGCGCCAGAGCGCGTCCCGGTGCGGCGACTCGCTGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCATCGATGTGTTCCAAAAGGATCTAGAGTCCTACAGAAAGCAGCACAGTCCAGGCCAGGTTTACATAACACGTCGGTGTGCGCGGAGGGAAAAGCCTGTATCAGTCGGGCACCTACTTCGGTATAGCATTACAGGAATTACTTTTTGGCAGGCGGAAAATCACTTCACCGAGCGCATCTCGCAATGGGGCGGCAGACTTGTTGTTCCAGAACGTATGACGATTTCGTACGCGCCTGTCGGTGTATTTCACAATCTTGGCTCGTTGTTTACCAACGCACGAAAATTTCACAAAATGTTACACCACCTTTTCTTTGCTTCTGTGCTTTGTTCGCAGTTGTTTTGGCTTGCGATTACTTCTTC--TTTTTTTTGGCGAATAACAATAAAAATAGAGTACCGCTCGGACGTCGAAAGCAATACTTGCCGGACGTGAATGTTTTTATTTCGCCGGTCCGTATTGTGCGG]

[+] EMBL AGA284493            [CGCTGCGCTCGAACTGCACCGACACGCCGTCGGTCACGCCGAGCCGCTGCTCGACCGACCGCAGCTTCTCCTCGAACTTGTTCACGTCCGCCACCGCCATGTGGAAGATGTTCGACTGCACCCGGCGCCCCTTCACGATCGCCCCGTCGTGCAGGATGATCGTCACCATCTCCATGTCCGGGTGGACCACCACCTCCTTCACCTCGCCGACCGCCAGCATGTGGTGGACGAACTCGTGCCAGCTGACGTAGCGCGTGGCCGACTCGGGCCGGTTGCGGGACGGCAGCACCATCGACAGGAAGCCGACCAGCAGGTAGATCGTGATCATCCAGATGAGCGTCTTCGTCACCACCGACATCATCTTCTCCTTGTCGTCCTCATCCTCATCTTTCTTGCGGTTTGGGTCGGACCCGTCNCGGTCCGGCGGCTTCTGGTTCGGGCCGCTCGGCTGCGCT CCCTGC GGCG CCCGGTTGCCGCACGCCGTGTGCAGGTGGCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AGA283395            [CGCTGCGCTCGAACTGCACCGACACGCCGTCGGTCACGCCGAGCCGCTGCTCGACCGACCGCAGCTTCTCCTCGAACTTGTTCACGTCCGCCACCGCCATGTGGAAGATGTTCGACTGCACCCGGCGCCCCTTCACGATCGCCCCGTCGTGCAGGATGATCGTCACCATCTCCATGTCCGGGTGGACCACCACCTCCTTCACCTCGCCGACCGCCAGCATGTGGTGGACGAACTCGTGCCAGCTGACGTAGCGCGTGGCCGACTCGGGCCGGTTGCGGGACGGCAGCACCATCGACAGGAAGCCGACCAGCAGGTAGATCGTGATCATCCAGATGAGCGTCTTCGTCACCACCGACATCATCTTCTCCTTGTCGTCCTCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AGA280226            [CGCTGCGCTCGAACTGCACCGACACGCCGTCGGTCACGCCGAGCCGCTGCTCGACCGACCGCAGCTTCTCCTCGAACTTGTTCACGTCCGCCACCGCCATGTGGAAGATGTTCGACTGCACCCGGCGCCCCTTCACGATCGCCCCGTCGTGCAGGATGATCGTCACCATCTCCATGTCCGGGTGGACCACCACCTCCTTCACCTCGCCGACCGCCAGCATGTGGTGGACGAACTCGTGCCAGCTGACGTAGCGCGTGGCCGACTCGGGCCGGTTGCGGGACGGCAGCACCATCGACAGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL BM603249             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTGCGCTCCCCTGCGGGCGCCCCGGTTGCCGCACGCCGTGTGCAGGTGGCGCGCGAACACGTACGCTGGGGATCGAGCCCGCATCGCACAGCATGCGCAGCAGGGCCCGCTGGTCGGCCTGCAGCTGCCGGAGCTGGCGCCGGGTCGGGGCGGGCTGTGTACCGCGCGGCACCCCGCTGCAAGCTCGCGCCAGAGCGCGTCCCGGTGCGGCGACTCGCTGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCATCGATGTGTTCCAAAAGGATCTAGAGTCCTACAGAAAGCAGCACAGTCCAGGCCAGGTTTACATAACACGTCGGTGTGCGCGGAGGGAAAAGCCTGTATCAGTCGGGCACCTACTTCGGTATAGCATTACAGGAATTACTTTTTGGCAGGCGGAAAATCACTTCACCGAGCGCATCTCGCAATGGGGCGGCAGACTTGTTGTTCCAGAACGTATGACGATTTCGTACGCGCCTGTCGGTGTATTTCACAATCTTGGCTCGTTGTTTACCAACGCACGAAAATTTCACAAAATGTTACACCACCTTTTCTTTGCTTCTGTGCTTTGTTCGCAGTTGTTTTGGCTTGCGATTACTTCTTC  TTTTTTTTGGCGAATAACAATAAAAATAGAGTACCGCTCGGACGTCGAAAGCAATACTTGCCGGACGTGAATGTTTTTATTTCGCCGG              ]
[-] EMBL BM599023             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AATGGGTCTAGAGTCCTACAGAAAGCAGCACAGTCCAGGCCAGGTTTACATAACACGTCGGTGTGCGCGGAGGGAAAAGCCTGTCCCAGTCGGGCACCTCCTTCGGTATAGCATTACAGGA   ACTTTTTGGCAGGCGGAAAATCACTTCTCCGAGCGCATCTCGCAATGGGGCGGCAGACTTATTGTTCCAGAACGTATGACGATTTCGTACGCGCCTGTCGGTGTATTTCACAATCTTGGCTCGTTGTTTACCAACGCACGAAAATTTCACAAAATGTTACACCACCTTTTCTTTGCTTCTGTGCTTTGTTCGCAGTTGTTTTGGCTTGCGATTACTTCTTCTTTTTTTTTTTGCGAATAGCAATAAAAATAGAGTTCCGCTCGGTCGTCGAAAGCAATACTTGCCGGACGTGAATGTTTTTATTCCGCTGCTCCGTATTGTGCGG]


>consensus_8788#0 CGCTGCGCTCGAACTGCACCGACACGCCGTCGGTCACGCCGAGCCGCTGCTCGACCGACC GCAGCTTCTCCTCGAACTTGTTCACGTCCGCCACCGCCATGTGGAAGATGTTCGACTGCA CCCGGCGCCCCTTCACGATCGCCCCGTCGTGCAGGATGATCGTCACCATCTCCATGTCCG GGTGGACCACCACCTCCTTCACCTCGCCGACCGCCAGCATGTGGTGGACGAACTCGTGCC AGCTGACGTAGCGCGTGGCCGACTCGGGCCGGTTGCGGGACGGCAGCACCATCGACAGGA AGCCGACCAGCAGGTAGATCGTGATCATCCAGATGAGCGTCTTCGTCACCACCGACATCA TCTTCTCCTTGTCGTCCTCATCCTCATCTTTCTTGCGGTTTGGGTCGGACCCGTCNCGGT CCGGCGGCTTCTGGTTCGGGCCGCTCGGCTGCGCTCCCTGCGGCGCCCGGTTGCCGCACG CCGTGTGCAGGTGGCGCGCGAACACGTACGCTGGGGATCGAGCCCGCATCGCACAGCATG CGCAGCAGGGCCCGCTGGTCGGCCTGCAGCTGCCGGAGCTGGCGCCGGGTCGGGGCGGGC TGTGTACCGCGCGGCACCCCGCTGCAAGCTCGCGCCAGAGCGCGTCCCGGTGCGGCGACT CGCTGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCATCGATGTGTTCC AAAAGGATCTAGAGTCCTACAGAAAGCAGCACAGTCCAGGCCAGGTTTACATAACACGTC GGTGTGCGCGGAGGGAAAAGCCTGTATCAGTCGGGCACCTACTTCGGTATAGCATTACAG GAATTACTTTTTGGCAGGCGGAAAATCACTTCACCGAGCGCATCTCGCAATGGGGCGGCA GACTTGTTGTTCCAGAACGTATGACGATTTCGTACGCGCCTGTCGGTGTATTTCACAATC TTGGCTCGTTGTTTACCAACGCACGAAAATTTCACAAAATGTTACACCACCTTTTCTTTG CTTCTGTGCTTTGTTCGCAGTTGTTTTGGCTTGCGATTACTTCTTCTTTTTTTTGGCGAA TAACAATAAAAATAGAGTACCGCTCGGACGTCGAAAGCAATACTTGCCGGACGTGAATGT TTTTATTTCGCCGGTCCGTATTGTGCGG



consensusID : consensus_8788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 964
fasta sequence
                              [AGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTAAATAGGCATCATTAATTTATTTACAACGCAACATACCCGCGCGCGTTCGGCTTCCAACCATACACAGTGTTGTTTTTTTTTTTAGTTTGCTATCCCGCATAGACTACACCCCTGCCCCGCTCCCTCCCTTCCGTCTACTTTACTTTTCCTCCGTGCCGTTCTGGGCGAGCCGCTTCAGGCTGTCCTCGAACTCGACCGGTTCGATCTTGCGCTGGGCATCGTCGTACTGGGGCGGGCCGATCAGCTCCACCACCTGGTCGTAGTTGAGCGTTTCCTGCTCGAGCAGCGCCTCGGGGCGGGCTGTGTACCGCGCGGCACCCGCTGCAGCTCGCGCCAGAGCGCGT-CCCGGTGCGGTGACTCGCTGGTGACGGTGCGGTGCGCGAGCGCCAGGACGGGCTCGAGCCGGCGCACCGCCAGCCTCACCACGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCTTCGATGTGTTCCAAATGGGTCTAGAGTCCTACAGAAAGCAGCACAGTCCAGGCCAGGTTTACATAACACGTCGGTGTGCGCGGAGGGAAAAGCCTGTACCAGTCGGGCACCTACTTCGGTATAGCATTACAGGA---ACTTTTTGGCAGGCGGAAAATCACTTCACCGAGCGCATCTCGCAATGGGGCGGCAGACTTATTGTTCCAGAACGTATGACGATTTCGTACGCGCCTGTCGGTGTATTTCACAATCTTGGCTCGTTGTTTACCAACGCACGAAAATTTCACAAAATGTTACACCACCTTTTCTTTGCTTCTGTGCTTTGTTCGCAGTTGTTTTGGCTTGCGATTACTTCTTC-TTTTTTTTTTGCGAATAACAATAAAAATAGAGTACCGCTCGGTCGTCGAAAGCAATACTTGCCGGAGGAGGATGTTTTAGGTAGGCCAACAGTTCTCGAGGAA]

[-] EMBL CNS08XW5             [AGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTAAATAGGCATCATTAATTTATTTACAACGCAACATACCCGCGCGCGTTCGGCTTCCAACCATACACAGTGTTGTTTTTTTTTTTAGTTTGCTATCCCGCATAGACTACACCCCTGCCCCGCTCCCTCCCTTCCGTCTACTTTACTTTTCCTCCGTGCCGTTCTGGGCGAGCCGCTTCAGGCTGTCCTCGAACTCGACCGGTTCGATCTTGCGCTGGGCATCGTCGTACTGGGGCGGGCCGATCAGCTCCACCACCTGGTCGTAGTTGAGCGTTTCCTGCTCGAGCAGCGCCTCGGGGCGGGCTGTGTACCGCGCGGCACCCGCTGCAGCTCGCGCCAGAGCGCGT CCCGGTGCGGTGACTCGCTGGTGACGGTGCGGTGCGCGAGCGCCAGGACGGGCTCGAGCCGGCGCACCGCCAGCCTCACCACGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCTTCGATGTGTTCCAAATGGGTCTAGAGTCCTACAGAAAGCAGCACAGTCCAGGCCAGGTTTACATAACACGTCGGTGTGCGCGGAGGGAAAAGCCTGTACCAGTCGGGCACCTACTTCGGTATAGCATTACAGGA   ACTTTTTGGCAGGCGGAAAATCACTTCACCGAGCGCATCTCGCAATGGGGCGGCAGACTTATTGTTCCAGAACGTATGACGATTTCGTACGCGCCTGTCGGTGTATTTCACAATCTTGGCTCGTTGTTTACCAACGCACGAAAATTTCACAAAATGTTACACCACCTTTTCTTTGCTTCTGTGCTTTGTTCGCAGTTGTTTTGGCTTGCGATTACTTCTTC TTTTTTTTTTGCGAATAACAATAAAAATAGAGTACCGCTCGGTCGTCGAAAGCAATACTTGCCGGAGGAGGATGTTTTAG                       ]
[+] EMBL CNS08XW6             [                      TTTTTTTTTTTTTAAATAACTCTCATTAATTTATTTACAACGCAACATACCCGCGCGCGTTCGGCTTCCAACCATACACAGTGTTGTTTTTTTTTTTAGTTTGCTATCCCGCATAGACTACACCCCTGCCCCGCTCCCTCCCTTCCGTCTACTTTACTTTTCCTCCGTGCCGTTCTGGGCGAGCCGCTTCAGGCTGTCCTCGAACTCGACCGGTTCGATCTTGCGCTGGGCATCGTCGTACTGGGGCGGGCCGATCAGCTCCACCACCTGGTCGTAGTTGAGCGTTTCCTGCTCGAGCAGCGCCTCGGGGCGGGCTGTGTACCGCGCGGCACCCGCTGCAGCTCGCGCCAAAACGCGT CCCGGTGCGGTGACTCGCTGGTGACGGTGCGGTGCGCGAGCGCCAGGACGGGCTCGAGCCGGCGCACCGCCAGCCTCACCACGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCTTCGATGTGTTCCAAATGGGTCTAGAGTCCTACAGAAAGCAGCACAGTCCAGGCCAGGTTTACATAACACGTCGGTGTGCGCGGAGGGAAAAGCCTGTACCAGTCGGGCACCTACTTCGGTATAGCATTACAGGA   ACTTTTTGGCAGGCGGAAAATCACTTCACCGAGCGCATCTCGCAATGGGGCGGCAGACTTATTGTTCCAGAACGTATGACGATTTCGTACGCGCCTTTCGGTGTATTTCACAATCTTGGCTCGTTGTTTACCAACGCACGAAAATTTCACAAAATGTTACACCACCTTTTCTTTGCTTCTGTGCTTTGTTCGCAGTTGTTTTGGCTTGCGATTACTTCTTCTTTTTTTTTTTGCGAATAACAATAAAAATAGAGTACCGCTCGGTCGTCGAAAGCAATACTTGCCGGACGTGAATTTTTTAGGTAGGCCAACAGTTCTCGAGGAA]
[-] EMBL AGA284688            [                                                                                                                                                                                                                                                                                                                                                                                GCCAGAGCG GTCCCCGGTGCGGCGACTCGCTGGTGACGGTGCGGTGCGCGAGCGCCAGGACGGGCTCGAGCCGGCGCACCGCCAGCCTCACCACGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCATCGATGTGTTCCAAAAGGATCTAGAGTCCTACAGAAAGCAGCACAGTCCAGGCCAGGTTTACATAACACGTCGGTGTGCGCGGAGGGAAAAGCCTGTATCAGTCGGGCACCTACTTCGGTATAGCATTACAGGAATTACTTTTTGGCAGGCGGAAAATCACTTCACCGAGCGCATCTCGCAATGGGGCGGCAGACTTGTTGTTCCAGAACGTATGACGATTTCGTACGCGCCTGTCGGTGTATTTCACAATCTTGGCTCGTTGTTTACCAACGCACGAAAATTTCACAAAATGTTACACCACCTTTTCTTTGCTTCTGTGC                                                                                                                                             ]
[-] EMBL AGA281922            [                                                                                                                                                                                                                                                                                                                                                                                                                                 CGAGCGCCAGGACGGGCTCGAGCCGGCGCACCGCCAGCCTCACCACGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCATCGATGTGTTCCAAAAGGATCTAGAGTCCTACAGAAAGCAGCACAGTCCAGGCCAGGTTTACATAACACGTCGGTGTGCGCGGAGGGAAAAGCCTGTATCAGTCGGGCACCTACTTCGGTATAGCATTACAGGAATTACTTTTTGGCAGGCGGAAAATCACTTCACCGAGCGCATCTCGCAATGGGGCGGCAG                                                                                                                                                                                                                                                                             ]


>consensus_8788#1 AGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTAAATAGGCATCATTAATTTATTTAC AACGCAACATACCCGCGCGCGTTCGGCTTCCAACCATACACAGTGTTGTTTTTTTTTTTA GTTTGCTATCCCGCATAGACTACACCCCTGCCCCGCTCCCTCCCTTCCGTCTACTTTACT TTTCCTCCGTGCCGTTCTGGGCGAGCCGCTTCAGGCTGTCCTCGAACTCGACCGGTTCGA TCTTGCGCTGGGCATCGTCGTACTGGGGCGGGCCGATCAGCTCCACCACCTGGTCGTAGT TGAGCGTTTCCTGCTCGAGCAGCGCCTCGGGGCGGGCTGTGTACCGCGCGGCACCCGCTG CAGCTCGCGCCAGAGCGCGTCCCGGTGCGGTGACTCGCTGGTGACGGTGCGGTGCGCGAG CGCCAGGACGGGCTCGAGCCGGCGCACCGCCAGCCTCACCACGGTGCCATTGATCAGCTG TCTACACCGCTCCAGATGATGCATCTTCGATGTGTTCCAAATGGGTCTAGAGTCCTACAG AAAGCAGCACAGTCCAGGCCAGGTTTACATAACACGTCGGTGTGCGCGGAGGGAAAAGCC TGTACCAGTCGGGCACCTACTTCGGTATAGCATTACAGGAACTTTTTGGCAGGCGGAAAA TCACTTCACCGAGCGCATCTCGCAATGGGGCGGCAGACTTATTGTTCCAGAACGTATGAC GATTTCGTACGCGCCTGTCGGTGTATTTCACAATCTTGGCTCGTTGTTTACCAACGCACG AAAATTTCACAAAATGTTACACCACCTTTTCTTTGCTTCTGTGCTTTGTTCGCAGTTGTT TTGGCTTGCGATTACTTCTTCTTTTTTTTTTGCGAATAACAATAAAAATAGAGTACCGCT CGGTCGTCGAAAGCAATACTTGCCGGAGGAGGATGTTTTAGGTAGGCCAACAGTTCTCGA GGAA



consensusID : consensus_8788#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence
                              [GCTTGCCAATGTAACTGTCCGCCGAACGTAAATAGGCATCATTAATTTATTTACAACGCAACATACCCGCGCGCGTTCGGCTTCCAACCATACACAGTGTTGTTTGTTTTTTTTTGTTTGCTATCCCGCATAGACTACACCCCTGCCCCGCTCCCTCCCTTCCGTCTACCTTACTTTTCCTCCGTGCCGTTCTGGGCGAGCCGCTTCAGGCTGTCCTCGAACTCGACCGGTTCGATCTTGCGCCGGGCATCGTCGTACTGGGGCGGGCCGATCAGCTCCACCACCTGGTCGTAGTTGAGCGTTTCCTGCTCGAGCAGCGCCTCGGCCAGCCGGTTCAGCTTGTCCGCGTTGTCGCGCAGTATCTGCTCGGTCCGCTCGTACGCCTCGGTGATCATCTTGCGCGCCTCAAAGTCGATCAGATTACCAAGCCCCTGCGAGTACGGTTTCTCCGCGTACGGGCTGTTGTCGCTGTCCTCGGCGAACGCGATCGGCCCGACCGTGCTGTTCATGCCGAAGTATTTAATCTGTGCGTACGCCATTTTGGTCACCTTCTCGAGAATCGTTCTGGGCGCCGGTGGTGAATCCGG]

[+] EMBL AGA285878            [GCTTGCCAATGTAACTGTCCGCCGAACGTAAATAGGCATCATTAATTTATTTACAACGCAACATACCCGCGCGCGTTCGGCTTCCAACCATACACAGTGTTGTTTGTTTTTTTTTGTTTGCTATCCCGCATAGACTACACCCCTGCCCCGCTCCCTCCCTTCCGTCTACCTTACTTTTCCTCCGTGCCGTTCTGGGCGAGCCGCTTCAGGCTGTCCTCGAACTCGACCGGTTCGATCTTGCGCCGGGCATCGTCGTACTGGGGCGGGCCGATCAGCTCCACCACCTGGTCGTAGTTGAGCGTTTCCTGCTCGAGCAGCGCCTCGGCCAGCCGGTTCAGCTTGTCCGCGTTGTCGCGCAGTATCTGCTCGGTCCGCTCGTACGCCTCGGTGATCATCTTGCGCGCCTCAAAGTCGATCAGATTACCAAGCCCCTGCGAGTACGGTTTCTCCGCGTACGGGCTGTTGTCGCTGTCCTCGGCGAACGCGATCGGCCCGACCGTGCTGTTCATGCCGAAGTATTTAATCTGTGCGTACGCCATTTTGGTCACCTTCTCGAGAATCGTTCTGGGCGCCGGTGGTGAATCCGG]


>consensus_8788#2 GCTTGCCAATGTAACTGTCCGCCGAACGTAAATAGGCATCATTAATTTATTTACAACGCA ACATACCCGCGCGCGTTCGGCTTCCAACCATACACAGTGTTGTTTGTTTTTTTTTGTTTG CTATCCCGCATAGACTACACCCCTGCCCCGCTCCCTCCCTTCCGTCTACCTTACTTTTCC TCCGTGCCGTTCTGGGCGAGCCGCTTCAGGCTGTCCTCGAACTCGACCGGTTCGATCTTG CGCCGGGCATCGTCGTACTGGGGCGGGCCGATCAGCTCCACCACCTGGTCGTAGTTGAGC GTTTCCTGCTCGAGCAGCGCCTCGGCCAGCCGGTTCAGCTTGTCCGCGTTGTCGCGCAGT ATCTGCTCGGTCCGCTCGTACGCCTCGGTGATCATCTTGCGCGCCTCAAAGTCGATCAGA TTACCAAGCCCCTGCGAGTACGGTTTCTCCGCGTACGGGCTGTTGTCGCTGTCCTCGGCG AACGCGATCGGCCCGACCGTGCTGTTCATGCCGAAGTATTTAATCTGTGCGTACGCCATT TTGGTCACCTTCTCGAGAATCGTTCTGGGCGCCGGTGGTGAATCCGG



consensusID : consensus_8788#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence
                              [AACACGTACGCTGGGATCGAGCCCGCATCGCACAGCATGCGCAGCAGGGCCCGCTGGTCGGCCTGCAGCTGCCGGAGCTGGCGCCGGGTCGGGGCGGGCTGTGTACCGCGCGGCACCCGCTGCAGCTCGCGCCAGAGCGCGTCCCGGTGCGGCGACTCGCTGGTGACGGTGCGGTGCGCGAGCGCCAGGACGGGCTCGAGCCGGCGCACCGCCAGCCTCACCACGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCATCGATGTGTTCCAAAAGGATCTAGAGTCCTACAGAAAGCAGCACAGTCCAGGCCAGGTTTACATA]

[-] EMBL AGA285796            [AACACGTACGCTGGGATCGAGCCCGCATCGCACAGCATGCGCAGCAGGGCCCGCTGGTCGGCCTGCAGCTGCCGGAGCTGGCGCCGGGTCGGGGCGGGCTGTGTACCGCGCGGCACCCGCTGCAGCTCGCGCCAGAGCGCGTCCCGGTGCGGCGACTCGCTGGTGACGGTGCGGTGCGCGAGCGCCAGGACGGGCTCGAGCCGGCGCACCGCCAGCCTCACCACGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCATCGATGTGTTCCAAAAGGATCTAGAGTCCTACAGAAAGCAGCACAGTCCAGGCCAGGTTTACATA]


>consensus_8788#3 AACACGTACGCTGGGATCGAGCCCGCATCGCACAGCATGCGCAGCAGGGCCCGCTGGTCG GCCTGCAGCTGCCGGAGCTGGCGCCGGGTCGGGGCGGGCTGTGTACCGCGCGGCACCCGC TGCAGCTCGCGCCAGAGCGCGTCCCGGTGCGGCGACTCGCTGGTGACGGTGCGGTGCGCG AGCGCCAGGACGGGCTCGAGCCGGCGCACCGCCAGCCTCACCACGGTGCCATTGATCAGC TGTCTACACCGCTCCAGATGATGCATCATCGATGTGTTCCAAAAGGATCTAGAGTCCTAC AGAAAGCAGCACAGTCCAGGCCAGGTTTACATA



consensusID : consensus_8788#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence
                              [CCGCCCACGCGTCCGCGCTCAACTACGACCAGGTGGTGGAGCTGATCGGCCCGCCCCAGTACGACGATGCCCGGCGCAAGATCGAACCGGTCGAGTTCGAGGACAGCCTGAAGCGGCTCGCCCAGAACGGCACGGAGGAAAAGTAAAGTAGACGGAAGGGAGGGAGCGGGGCAGGGGTGTAGTCTATGCGGGATAGCAAACTAAAAAAAAAAAACAACACTGTGTATGGTTGGAAGCCGAACGCGCGCGGGTATGTTGCGTTGTAAATAAATTAATGATGCCTATTT]

[+] EMBL BM593835             [CCGCCCACGCGTCCGCGCTCAACTACGACCAGGTGGTGGAGCTGATCGGCCCGCCCCAGTACGACGATGCCCGGCGCAAGATCGAACCGGTCGAGTTCGAGGACAGCCTGAAGCGGCTCGCCCAGAACGGCACGGAGGAAAAGTAAAGTAGACGGAAGGGAGGGAGCGGGGCAGGGGTGTAGTCTATGCGGGATAGCAAACTAAAAAAAAAAAACAACACTGTGTATGGTTGGAAGCCGAACGCGCGCGGGTATGTTGCGTTGTAAATAAATTAATGATGCCTATTT]


>consensus_8788#4 CCGCCCACGCGTCCGCGCTCAACTACGACCAGGTGGTGGAGCTGATCGGCCCGCCCCAGT ACGACGATGCCCGGCGCAAGATCGAACCGGTCGAGTTCGAGGACAGCCTGAAGCGGCTCG CCCAGAACGGCACGGAGGAAAAGTAAAGTAGACGGAAGGGAGGGAGCGGGGCAGGGGTGT AGTCTATGCGGGATAGCAAACTAAAAAAAAAAAACAACACTGTGTATGGTTGGAAGCCGA ACGCGCGCGGGTATGTTGCGTTGTAAATAAATTAATGATGCCTATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8788#0      CGCTGCGCTCGAACTGCACCGACACGCCGTCGGTCACGCCGAGCCGCTGCTCGACCGACC 60
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      ------------------------------------------------------------
consensus_8788#2      ------------------------------------------------------------
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      GCAGCTTCTCCTCGAACTTGTTCACGTCCGCCACCGCCATGTGGAAGATGTTCGACTGCA 120
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      ------------------------------------------------------------
consensus_8788#2      ------------------------------------------------------------
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      CCCGGCGCCCCTTCACGATCGCCCCGTCGTGCAGGATGATCGTCACCATCTCCATGTCCG 180
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      ------------------------------------------------------------
consensus_8788#2      ------------------------------------------------------------
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      GGTGGACCACCACCTCCTTCACCTCGCCGACCGCCAGCATGTGGTGGACGAACTCGTGCC 240
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      ------------------------------------------------------------
consensus_8788#2      ------------------------------------------------------------
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      AGCTGACGTAGCGCGTGGCCGACTCGGGCCGGTTGCGGGACGGCAGCACCATCGACAGGA 300
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      -----------------AGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTAAATAGGC 43
consensus_8788#2      -----------------------GCTTGCCAATGTAACTGTCCGCCGAACGTAAATAGGC 37
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      AGCCGACCAGCAGGTAGATCGTGATCATCCAGATGAGCGTCTTCGTCACCACCGACATCA 360
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      ATCATTAATTTATTTACAACGCAA-CATACCCGCGCGCGTTCGGCTTCCAACCATACACA 102
consensus_8788#2      ATCATTAATTTATTTACAACGCAA-CATACCCGCGCGCGTTCGGCTTCCAACCATACACA 96
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      TCTTCTCCT-TGTCGTCCTCATCCTCATCTTTCTTGCGGTTTGGGTCGGACCCGTCNCGG 419
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      GTGTTGTTT-TTTTTTTTAGTTTGCTATCCCGCATAGACTACACCCCTGCCCCGCTCCCT 161
consensus_8788#2      GTGTTGTTTGTTTTTTTTTGTTTGCTATCCCGCATAGACTACACCCCTGCCCCGCTCCCT 156
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      TCCGGCGGCTTCTGGTTCGGGCCGCTCGGCTGCGCTCCCTGCGGCGCCCGGTTGCCGCAC 479
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      CCCTTCCG--TCTACTTTA--CTTTTCCTCCGTGCCGTTCTGGGCGAGCCGCTTCAGGCT 217
consensus_8788#2      CCCTTCCG--TCTACCTTA--CTTTTCCTCCGTGCCGTTCTGGGCGAGCCGCTTCAGGCT 212
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      GCCGTGTGCAGGTGGCGCGCGAACACGTACGCTGGGGATCGAGCCCGCATCGCA-CAGCA 538
consensus_8788#3      ---------------------AACACGTACGCTGGG-ATCGAGCCCGCATCGCA-CAGCA 37
consensus_8788#1      GTCCT-CGAACTCGACCGGTTCGATCTTGCGCTGGGCATCG---TCGTACTGGGGCGGGC 273
consensus_8788#2      GTCCT-CGAACTCGACCGGTTCGATCTTGCGCCGGGCATCG---TCGTACTGGGGCGGGC 268
consensus_8788#4      --------------------------------------------CCGC-CCACGCGTCCG 15
                                                                   **             

consensus_8788#0      TGCGCAGCAGGGCCCGCTGGTCGGCCTGCAGC--TGCCGGAGCTGGCGCCGGGTCGGGGC 596
consensus_8788#3      TGCGCAGCAGGGCCCGCTGGTCGGCCTGCAGC--TGCCGGAGCTGGCGCCGGGTCGGGGC 95
consensus_8788#1      CGATCAGCTCCACCACCTGGTCGTAGTTGAGCGTTTCCTGCTCGAGCAGCGCCTCGGGGC 333
consensus_8788#2      CGATCAGCTCCACCACCTGGTCGTAGTTGAGCGTTTCCTGCTCGAGCAGCGCCTCGGC-C 327
consensus_8788#4      CGCTCAACT--ACGACCAGGT---GGTGGAGC------TGATCGGCC--CGCCCCAGTAC 62
                       *  ** *    *   * ***     *  ***       *  *   *  **   * *  *

consensus_8788#0      GGGCTGTGTACCGCGCGGCACCCCGCTGCAAGCTCGCGCCAGAGCGCGTCCCGGTGCGGC 656
consensus_8788#3      GGGCTGTGTACCGCGCGGCACCC-GCTGCA-GCTCGCGCCAGAGCGCGTCCCGGTGCGGC 153
consensus_8788#1      GGGCTGTGTACCGCGCGGCACCC-GCTGCA-GCTCGCGCCAGAGCGCGTCCCGGTGCGGT 391
consensus_8788#2      AGCCGGTTCAGCTTGTC-CGCGTTGTCGCG---CAGTATCT--GCTCGGTCCGCTCGTAC 381
consensus_8788#4      GA-CGATGCCCGGCGCAAGATCGAACCGG----TCGAGTTCGAGGACAGCCTGA---AGC 114
                         *  *       *            *       *       *  *   * *       

consensus_8788#0      GACTCGCTGGTG------------------------------------------------ 668
consensus_8788#3      GACTCGCTGGTGACGGTGCGGTGCGCGAGCGCCAGGACGGGCTCGAGCCGGCGCACCGCC 213
consensus_8788#1      GACTCGCTGGTGACGGTGCGGTGCGCGAGCGCCAGGACGGGCTCGAGCCGGCGCACCGCC 451
consensus_8788#2      GCCTCGGTGATCATCTTGCGCGCCTCAAAGTCGATCAGATTACCAAGCCCCTGCGAGTAC 441
consensus_8788#4      GGCTCGCCCAGAACGGCACGGAGGAAAAG-------------TAAAGTAGACGGAAGGGA 161
                      * ****                                                      

consensus_8788#0      ---------------CCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCATCGAT 713
consensus_8788#3      AGCCTCACCACGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCATCGAT 273
consensus_8788#1      AGCCTCACCACGGTGCCATTGATCAGCTGTCTACACCGCTCCAGATGATGCATCTTCGAT 511
consensus_8788#2      GGTTTCT--------CCGCGTACGGGCTGTTGTCGCTGTCCTCGGCGA-ACGCGATCGGC 492
consensus_8788#4      GG-------------GAGCGGGGCAGGGGTGTAGTCTATGCGGGATAGCAAACTAAAAAA 208
                                               *  **     *    *  *                

consensus_8788#0      GTG----TTCCAAAAGGATCTAGAGTCCTACAGAAAGCA-GCACAGTCCAGGCCAGGTTT 768
consensus_8788#3      GTG----TTCCAAAAGGATCTAGAGTCCTACAGAAAGCA-GCACAGTCCAGGCCAGGTTT 328
consensus_8788#1      GTG----TTCCAAATGGGTCTAGAGTCCTACAGAAAGCA-GCACAGTCCAGGCCAGGTTT 566
consensus_8788#2      CCGACCGTGCTGTTCATGCCGAAGTATTTAATCTGTGCGTACGCCATTTTGGTCACCTTC 552
consensus_8788#4      AAA----AAACAACACTGTGTATGGTTGGAAGCCGAACGCGCGCGGGTATGTTGCGTTGT 264
                                           *       *       *   * *      *      *  

consensus_8788#0      ACATAACACGTCGGTGTGCGCGGAGGGAAAAGCCTGTATCAGTCGGGCACCTACTTCGGT 828
consensus_8788#3      ACATA------------------------------------------------------- 333
consensus_8788#1      ACATAACACGTCGGTGTGCGCGGAGGGAAAAGCCTGTACCAGTCGGGCACCTACTTCGGT 626
consensus_8788#2      TCGAGAATCGTTC-TGGGCGCCGGTGGTGAATCCGG------------------------ 587
consensus_8788#4      AAATAAATTAATGATGCCTATTT------------------------------------- 287
                                                                                  

consensus_8788#0      ATAGCATTACAGGAATTACTTTTTGGCAGGCGGAAAATCACTTCACCGAGCGCATCTCGC 888
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      ATAGCATTACAGGA---ACTTTTTGGCAGGCGGAAAATCACTTCACCGAGCGCATCTCGC 683
consensus_8788#2      ------------------------------------------------------------
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      AATGGGGCGGCAGACTTGTTGTTCCAGAACGTATGACGATTTCGTACGCGCCTGTCGGTG 948
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      AATGGGGCGGCAGACTTATTGTTCCAGAACGTATGACGATTTCGTACGCGCCTGTCGGTG 743
consensus_8788#2      ------------------------------------------------------------
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      TATTTCACAATCTTGGCTCGTTGTTTACCAACGCACGAAAATTTCACAAAATGTTACACC 1008
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      TATTTCACAATCTTGGCTCGTTGTTTACCAACGCACGAAAATTTCACAAAATGTTACACC 803
consensus_8788#2      ------------------------------------------------------------
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      ACCTTTTCTTTGCTTCTGTGCTTTGTTCGCAGTTGTTTTGGCTTGCGATTACTTCTTCTT 1068
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      ACCTTTTCTTTGCTTCTGTGCTTTGTTCGCAGTTGTTTTGGCTTGCGATTACTTCTTCTT 863
consensus_8788#2      ------------------------------------------------------------
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      TTTTTTG-GCGAATAACAATAAAAATAGAGTACCGCTCGGACGTCGAAAGCAATACTTGC 1127
consensus_8788#3      ------------------------------------------------------------
consensus_8788#1      TTTTTTTTGCGAATAACAATAAAAATAGAGTACCGCTCGGTCGTCGAAAGCAATACTTGC 923
consensus_8788#2      ------------------------------------------------------------
consensus_8788#4      ------------------------------------------------------------
                                                                                  

consensus_8788#0      CGGACGTGAATGTTTTTATTTCGCCGGTCCGTATTGTGCGG 1168
consensus_8788#3      -----------------------------------------
consensus_8788#1      CGGAGGAGGATGTTTTAGGTAGGCCAACAGTTCTCGAGGAA 964
consensus_8788#2      -----------------------------------------
consensus_8788#4      -----------------------------------------
                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)