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Anopheles gambiae
cluster # 8789 cluster # 8789       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8789#0 length = 1182 sequences # 7  
consensus_8789#1 length = 922 sequences # 4  
consensus_8789#2 length = 360 sequences # 1  

consensusID : consensus_8789#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1182
fasta sequence
                              [ATGGTGGGGACATTTCTTATGCATAATGTTGACACACGTTTGAGGCGCTTCGGTCAGTCCTCCGGCGGCAAGAAAGGGCCCCCTCGACCCAAGTTGACAATGTCACTGCCAATAGCCAAAGTCACGCAACCAGCGGAGTCCTTCGACCGTACTGGTCAGCGGGCGATACTCACACCCAA-CCCAGCCGTCCGCGTACTGGCCCTCGCTGTCCAGCACTTGTAGCACGTGGCGAAAGTTCAATTCACCATCACTGTCCGGTTCGTTTCGGCCCGGTACCTGTGCCAACTGCACGTGTCCGATGTGGGACGCCAGCTCACGGATGCTGTTCGTGATGTTCCCGCGTATATGCTGGGCGTGGTAGATATCGAACATCAGCTTCAAATTCGGACTGCCGACGGAGGTGATGGTCTGAACAGCCTTATCGTAACAGGAAAGATAGTACCCAGGCACCGCATACTTGTTAATGGGTTCAATAACACCGATAATGTTGTTCCGTTCCAAAATCGGAGCAGCAAGTCGAAGATTGGCAAGATAGGTACGATCGTGTGCTTCCGTTGCCGGACCCTCCAGCTTACCTGCCATTATGTGTATTTTCCCGCAACCGACAGCCTTCGCGTATTCGACGGTGCGTTCGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCCAGCGCAATGTTCAGTAGGATTTGCCTCAATCCTGTCTCCTCCAGGACGGTTTTTAGCGATTCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAATGTGTGTGTTCACACGCTAACGAGAGAAGAACCTTCACTATTTGTCACTCTTATCAGTGGGTTTGAGAAGCACCCCC-AAAAAACCAACGAACCGCAGCTGTTTGTTTTGTTTCGTGTCAATCAAACTACCAACAGTGCGTGTAATTAATTAACCTTTCCGGGTGCGTTTAGAGAACACAAGACCGCCACACCAAACCACAAACAACACTGGGCTGGTGCTGGTTTGATTTCTCCCTTGTGGGTGGTTACGGCGG]

[+] EMBL CNS0934A             [ATGGTGGGGACATTTCTTATGCATAATGTTGACACACGTTTGAGGCGCTTCGGTCAGTCCTCCGGCGGCAAGAAAGGGCCCCCTCGACCCAAGTTGACAATGTCACTGCCAATAGCCAAAGTCACGCAACCAGCGGAGTCCTTCGACCGTACTGGTCAGCGGGCGATACTCACACCCAA CCCAGCCGTCCGCGTACTGGCCCTCGCTGTCCAGCACTTGTAGCACGTGGCGAAAGTTCAATTCACCATCACTGTCCGGTTCGTTTCGGCCCGGTACCTGTGCCAACTGCACGTGTCCGATGTGGGACGCCAGCTCACGGATGCTGTTCGTGATGTTCCCGCGTATATGCTGGGCGTGGTAGATATCGAACATCAGCTTCAAATTCGGACTGCCGACGGAGGTGATGGTCTGAACAGCCTTATCGTAACAGGAAAGATAGTACCCAGGCACCGCATACTTGTTAATGGGTTCAATAACACCGATAATGTTGTTCCGTTCCAAAATCGGAGCAGCAAGTCGAAGATTGGCAAGATAGGTACGATCGTGTGCTTCCGTTGCCGGACCCTCCAGCTTACCTGCCATTATGTGTATTTTCCCGCAACCGACAGCCTTCGCGTATTCGACGGTGCGTTCGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCCAGCGCAATGTTCAGTAGGATTTGCCTCAATCCTGTCTCCTCCAGGACGGTTTTTAGCGATTCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAATGTGTGTGTTCA ACGCTAACGAGAGAAGAA CTTCACTATTTGT                                                                                                                                                                                                                  ]
[+] EMBL CNS08RSD             [                        AATGTTGACACACGTTTGAGGCGCTACGGTCAGTCCTCCGGTGGCAAGAAAGGGTCCCCTCGACCCAAGTTGACAATGTCACTGCCAATAGCCAAAGTCACGCAACCAGCGGAGTCCTTCGACCGTACTGGTCAGCGGGCGATACTCACACCCAA CCCAGCCGTCCGCGTACTGGCCCTCGCTGTCCAGCACTTGTAGCACGTGGCGAAA TTCAATTCACCATCACTGTCCGGTTCGTTTCGGCCCGGTACCTGTGCC ACTGCACGTGTCCGATGTGGGACGCCAGCTCACGGATGCTGTTCGTGATGTTCCCGCGTATATGCTGGGCGTGGTAGATATCGAACATCAGCTTCAAATTCGGACTGCCGACGGAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CNS09349             [                                                                                                                                                                                CAACCCCAGCCGTCCGCGTACTGGCCCTCGCTGTCCAGCACTTGTAGCACGTGGCGAAAGTTCAATTCACCATCACTGTCCGGTTCGTTTCGGCCCGGTACCTGTGCCAACTGCACGTGTCCGATGTGGGACGCCAGCTCACGGATGCTGTTCGTGATGTTCCCGCGTATATGCTGGGCGTGGTAGATATCGAACATCAGCTTCAAATTCGGACTGCCGACGGAGGTGATGGTCTGAACAGCCTTATCGTAACAGGAAAGATAGTACCCAGGCACCGCATACTTGTTAATGGGTTCAATAACACCGATAATGTTGTTCCGTTCCAAAATCGGAGCAGCAAGTCGAAGATTGGCAAGATAGGTACGATCGTGTGCTTCCGTTGCCGGACCCTCCAGCTTACCTGCCATTATGTGTATTTTCCCGCAACCGACAGCCTTCGCGTATTCGACGGTGCGTTCGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCCAGCGCAATGTTCAGTAGGATTTGCCTCAATCCTGTCTCCTCCAGGACGGTTTTTAGCGATTCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAATGTGTGTGTTCACACGCTAACGAGAGAAGAACCTTCACTATTTGTCACGCTTATCAGTGGGTTTGAGAAGCACCCCC AAAAAACCAACGAACCGCAGCTGTTTGTTTTGTTTCGTGTCAATCAAACTACCAACAGTGCGTGAAATTAATTAACCTTTCCGGGTGCGTTTAGGGAACACAAGACCGCCACACCAAA                                                           ]
[-] EMBL BX624191             [                                                                                                                                                                                                                                                                                                                                                                                   ATCAGCTTCAAATTCGGACTGCCGACGGAGGTGATGGTCTGANCAGCCTTATCGTAACAGGAAAGATAGTACCCAGGCACCGCATACTTGTTAATGGGTTCAATAACACCGATAATATTGTTCCGTTCCAAGATCGGAGCAGCGAGTCGAAGATTGGCAAGATAGGTACGATCGTGTGCTTCCGTTGCCGGACCCTCCAGCTTACCTGCCATTATGTGTATTTTCCCGCAACCGACAGCCTTGGCGTATTCGACGGTGCGTTCGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCCAGCGCAATGTTCAGTAGGATTTGCCTCAATCCTGTCTCCTCCAGGACGGTTTTTAGCGATTCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAA  TGTGTGTTCACACGCTAACGATAGAAGAACCTTCACTATTTGTCACTCTTATCAGTGGGTTTGAGAAGCACCCCC AAAAAACCAACGAACCGCAGCTGTTTGTTTTGTTTCGTGTCAATCAAACTACCAACAGTGCGTGTAATTAATTAACCTTTCCGGGTGCGTTTAGAGAACACAAGACCGCCACACCA                                                             ]
[-] EMBL BM634674             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTCAATACCACCGATAATGTTGTTCCGTTCCAAAATCGGAGCAGCAAGTCGAAGATTGGCAAGATAGGTACGATCGTGTGCTTCCGTTGCCGGACCCTCCAGCTTACCTGCCATTATGTGTATTTTCCCGCAACCGACAGCCTTGGCGTATTCGACGGTGCGTTCGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCCAGCGCAATGTTCAGTAGGATTTGCCTCAATCCCGTCTCTTCCAGTACGGTTTTTAGCGATTCCGGATTGATTTCGGCCGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAAAATGTGTGTGTTCACACGCTAACGAGAGAAGAACCTTCACTATTTGTCACTCTTATCAGTGGGTTTGAGAAGCACCCCCAAAAAAACCAACGAACCGCAGCTTTTTGTTTTGTTTCGTGTCAATCAAACTACCAACAGTGCGTGTAATTAATTAACCTTTCCGGGTGCGTTTAGAGAACACAAGACCGCCcgg                                                                ]
[-] EMBL BM612434             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGT   CCAGCGCAATGTTCAGTAGGATTTGCCTCAATCCCGTCTCTTCCAGTACGGTTTTTAGCGATTCCGGATTGATTTCGGCCGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAAAATGTGTGTGTTCACACGCTAACGAGAGAAGAACCTTCACTATTTGTCACTCTTATCAGTGGGTTTGAGAAGCACCCCCAAAAAAACCAACGAACCGCAGCTTTTTGTTTTGTTTCGTGTCAATCAAACTACCAACAGTGCGTGTAATTAATTAACCTTTCCGGGTGCGTTTAGAGAACACAAGACCGCCACACCAAACCACAAACAACACTGGGCTGGTGCTGGTTTGATTTCTCCCTTGTGGGTGGTTACGGCGG]
[-] EMBL CNS08RSC             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTTTAGCGATTCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGGAACCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAA  TGTGTGTTCACACGCTAACGAGAGAAGAACCTTCACTATTTGTCACTCTTATCAGTGGGTTTGTAAAGC                                                                                                                                                                                        ]


>consensus_8789#0 ATGGTGGGGACATTTCTTATGCATAATGTTGACACACGTTTGAGGCGCTTCGGTCAGTCC TCCGGCGGCAAGAAAGGGCCCCCTCGACCCAAGTTGACAATGTCACTGCCAATAGCCAAA GTCACGCAACCAGCGGAGTCCTTCGACCGTACTGGTCAGCGGGCGATACTCACACCCAAC CCAGCCGTCCGCGTACTGGCCCTCGCTGTCCAGCACTTGTAGCACGTGGCGAAAGTTCAA TTCACCATCACTGTCCGGTTCGTTTCGGCCCGGTACCTGTGCCAACTGCACGTGTCCGAT GTGGGACGCCAGCTCACGGATGCTGTTCGTGATGTTCCCGCGTATATGCTGGGCGTGGTA GATATCGAACATCAGCTTCAAATTCGGACTGCCGACGGAGGTGATGGTCTGAACAGCCTT ATCGTAACAGGAAAGATAGTACCCAGGCACCGCATACTTGTTAATGGGTTCAATAACACC GATAATGTTGTTCCGTTCCAAAATCGGAGCAGCAAGTCGAAGATTGGCAAGATAGGTACG ATCGTGTGCTTCCGTTGCCGGACCCTCCAGCTTACCTGCCATTATGTGTATTTTCCCGCA ACCGACAGCCTTCGCGTATTCGACGGTGCGTTCGACATTGGCGAGAAACTCCGACTCCCA TCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCCAGCGCAATGTTCAG TAGGATTTGCCTCAATCCTGTCTCCTCCAGGACGGTTTTTAGCGATTCCGGATTGATTTC GGCGGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTTGCAGCACGGTAGCG ACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGC AGTCATGTTGTGTGAGGTTGGCGAAGAATGTGTGTGTTCACACGCTAACGAGAGAAGAAC CTTCACTATTTGTCACTCTTATCAGTGGGTTTGAGAAGCACCCCCAAAAAACCAACGAAC CGCAGCTGTTTGTTTTGTTTCGTGTCAATCAAACTACCAACAGTGCGTGTAATTAATTAA CCTTTCCGGGTGCGTTTAGAGAACACAAGACCGCCACACCAAACCACAAACAACACTGGG CTGGTGCTGGTTTGATTTCTCCCTTGTGGGTGGTTACGGCGG



consensusID : consensus_8789#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 922
fasta sequence
                              [CCCGGTACCTGTGCCAACTGCACGTGTCCGATGTGGGACGCCAGCTCACGGATGCTGTTCGTGATGTTCCCGCGTATATGCTGGGCGTGGTAGATATCGAACATCAGCTTCAAATTCGGACTGCCGACGGAGGTGATGGTCTGAACAGCCTTATCGTAACAGGAAAGATAGTACCCAGGCACCGCATACTTGTTAATGGGTTCAATAACACCGATAATGTTGTTACGTTCC-AAGATCGGAGCAGCGAGTCGAAGATTGGC-AGATATGTACGATCGTGTGCTTCCGTTGCCGGACCCTCCAGCTTACCTGCCATTATGTGTATTTTCCCGCAACCGACAGCCTTGGCGTATTCGATGGTGC--TCGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCCAGCGC-AATGTTCAGTAGGATTTGCCTCAATCCTGTCTCCTCCAGGACGGTTTTTAGCGATTCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAATGTGTGTGTTCACACGCTAACGAGAGAAGAACCGCACGCGCACCTTCACTATTTGTCACTCTTATCAGTGGGTTTGAGAAGCACCCCCAAAAAACCAACGAACCGCAGCTTTTTGTTTTGTTTCGTGTCAATCAAACTAGCAGCAGTGCGTGAAATTAATTAACCTTTCCGGGTGCGTTTAGAGAACACAAGACCGCCACACCAAACCACAAACAACACTGGGCTGGTGCTGGTGTGATTTCTCCCCTTGTGGGTGGTTAGGGGT]

[-] EMBL BX610045             [CCCGGTACCTGTGCCAACTGCACGTGTCCGATGTGGGACGCCAGCTCACGGATGCTGTTCGTGATGTTCCCGCGTATATGCTGGGCGTGGTAGATATCGAACATCAGCTTCAAATTCGGACTGCCGACGGAGGTGATGGTCTGAACAGCCTTATCGTAACAGGAAAGATAGTACCCAGGCACCGCATACTTGTTAATGGGTTCAATAACACCGATAATGTTGTTACGTTCC AAGATCGGAGCAGCGAGTCGAAGATTGGC AGATATGTACGATCGTGTGCTTCCGTTGCCGGACCCTCCAGCTTACCTGCCATTATGTGTATTTTCCCGCAACCGACAGCCTTGGCGTATTCGATGGTGC  TCGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCCAGCGC AATGTTCAGTAGGATTTGCCTCAATCCTGTCTCCTCCAGGACGGTTTTTAGCGATTCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAATGTGTGTGTTCACACGCTAACGAGAGAAGAACCGCACGCGCACCTTCACTATTTGTCACTCTTATCA                                                                                                                                                                                                      ]
[-] EMBL BX610652             [                                                                                                                                                                                                                            TGTTACGTTCCAAAGATCGGAGCAGCGAGTCGAAGATTGGCAAGATATGTACGATCGTGTGCTTCCGTTGCCGGACCCTCCAGCTTACCTGCCATTATGTGTATTTTCCCGCAACCGACAGCCTTGGCGTATTCGATGGTGCGTTCGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCCAGCGC AATGTTCAGTAGGATTTGCCTCAATCCTGTCTCCTCCAGGACGGTTTTTAGCGATTCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAATGTGTGTGTTCACACGCTAACGAGAGAAGAACCGCACGCGCACCTTCACTATTTGTCACTCTTATCAGTGGGTTTGAGA                                                                                                                                                                                          ]
[-] EMBL BX603712             [                                                                                                                                                                                                                                                                                                                                                                                                    TCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCCAGCGCAAATGTTCAGTAGGATTTGCCTCAATCCTATCTCCTCCAGGACGGTTTTTAGCGATTCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAATGTGTGTGTTCACACGCTAACGAGAGAAGAACCGCACGCGCACCTTCACTATTTGTCACTCTTATCAGTGGGTTTGAGAAGCACCCCCAAAAAACCAACGAACCGCAGCTTTTTGTTTTGTTTCGTGTCAATCAAACTAGCAGCAGTGCGTGAAATTAATTAACCTTTCCGGGTGCGTTTAGAGAACACAAGACCGCCACACCAAACCACAAACAACACTGGGCTGGTGCTGGTGTGATTTCTCCCCTTGTGGGTGGTTAGGGGT]
[-] EMBL BX610651             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAATGTGTGTGTTCACACGCTAACGAGAGAAGAACCGCACGCGCAC                                                                                                                                                                                                                              ]


>consensus_8789#1 CCCGGTACCTGTGCCAACTGCACGTGTCCGATGTGGGACGCCAGCTCACGGATGCTGTTC GTGATGTTCCCGCGTATATGCTGGGCGTGGTAGATATCGAACATCAGCTTCAAATTCGGA CTGCCGACGGAGGTGATGGTCTGAACAGCCTTATCGTAACAGGAAAGATAGTACCCAGGC ACCGCATACTTGTTAATGGGTTCAATAACACCGATAATGTTGTTACGTTCCAAGATCGGA GCAGCGAGTCGAAGATTGGCAGATATGTACGATCGTGTGCTTCCGTTGCCGGACCCTCCA GCTTACCTGCCATTATGTGTATTTTCCCGCAACCGACAGCCTTGGCGTATTCGATGGTGC TCGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCA CCCTGCGCGTCTCCCAGCGCAATGTTCAGTAGGATTTGCCTCAATCCTGTCTCCTCCAGG ACGGTTTTTAGCGATTCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGG AAGCCCGCCGCCTTTGCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATA AAATTCAAATTCGCACAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAATGT GTGTGTTCACACGCTAACGAGAGAAGAACCGCACGCGCACCTTCACTATTTGTCACTCTT ATCAGTGGGTTTGAGAAGCACCCCCAAAAAACCAACGAACCGCAGCTTTTTGTTTTGTTT CGTGTCAATCAAACTAGCAGCAGTGCGTGAAATTAATTAACCTTTCCGGGTGCGTTTAGA GAACACAAGACCGCCACACCAAACCACAAACAACACTGGGCTGGTGCTGGTGTGATTTCT CCCCTTGTGGGTGGTTAGGGGT



consensusID : consensus_8789#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence
                              [CTCCTCTCTCTCGAGCTGCATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTCGTGAAGGAAGGGAGAATCAACTCGTACTGCTCGCTATACCACTACCAACCAACAACTGCTTTCAAAGTCACCCTTCTTATCGTTCCAGTGCAATGTCTCCATTGAGTTTGCAAATGCAAACAACATTATCTCAACACTTACTTCCCGCAACCGACAGCCTTGGCGTATTCGATGGTGCGTTCGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCCAGCGCAATGTTCAGTAGGATTTGCCT]

[-] EMBL BX607885             [CTCCTCTCTCTCGAGCTGCATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTCGTGAAGGAAGGGAGAATCAACTCGTACTGCTCGCTATACCACTACCAACCAACAACTGCTTTCAAAGTCACCCTTCTTATCGTTCCAGTGCAATGTCTCCATTGAGTTTGCAAATGCAAACAACATTATCTCAACACTTACTTCCCGCAACCGACAGCCTTGGCGTATTCGATGGTGCGTTCGACATTGGCGAGAAACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCCAGCGCAATGTTCAGTAGGATTTGCCT]


>consensus_8789#2 CTCCTCTCTCTCGAGCTGCATCGGCCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCG AGCATTCTACCACTGAACCACCGATGCTTCGTGAAGGAAGGGAGAATCAACTCGTACTGC TCGCTATACCACTACCAACCAACAACTGCTTTCAAAGTCACCCTTCTTATCGTTCCAGTG CAATGTCTCCATTGAGTTTGCAAATGCAAACAACATTATCTCAACACTTACTTCCCGCAA CCGACAGCCTTGGCGTATTCGATGGTGCGTTCGACATTGGCGAGAAACTCCGACTCCCAT CCAGGCAGGGCGGCACACCCAAACTGACCACCCCAGCGCAATGTTCAGTAGGATTTGCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8789#0      ATGGTGGGGACATTTCTTATGCATAATGTTGACACACGTTTGAGGCGCTTCGGTCAGTCC 60
consensus_8789#1      ------------------------------------------------------------
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      TCCGGCGGCAAGAAAGGGCCCCCTCGACCCAAGTTGACAATGTCACTGCCAATAGCCAAA 120
consensus_8789#1      ------------------------------------------------------------
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      GTCACGCAACCAGCGGAGTCCTTCGACCGTACTGGTCAGCGGGCGATACTCACACCCAAC 180
consensus_8789#1      ------------------------------------------------------------
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      CCAGCCGTCCGCGTACTGGCCCTCGCTGTCCAGCACTTGTAGCACGTGGCGAAAGTTCAA 240
consensus_8789#1      ------------------------------------------------------------
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      TTCACCATCACTGTCCGGTTCGTTTCGGCCCGGTACCTGTGCCAACTGCACGTGTCCGAT 300
consensus_8789#1      ----------------------------CCCGGTACCTGTGCCAACTGCACGTGTCCGAT 32
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      GTGGGACGCCAGCTCACGGATGCTGTTCGTGATGTTCCCGCGTATATGCTGGGCGTGGTA 360
consensus_8789#1      GTGGGACGCCAGCTCACGGATGCTGTTCGTGATGTTCCCGCGTATATGCTGGGCGTGGTA 92
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      GATATCGAACATCAGCTTCAAATTCGGACTGC--CGACGGAGGTGATGGTCTGAACAGCC 418
consensus_8789#1      GATATCGAACATCAGCTTCAAATTCGGACTGC--CGACGGAGGTGATGGTCTGAACAGCC 150
consensus_8789#2      -------------CTCCTCTCTCTCGAGCTGCATCGGCCGGGAATCGAACCCGGGCCGCC 47
                                     * **    ***  ****  ** * * *        * *  * ***

consensus_8789#0      TTATCGTAACAGGAAAG-ATAGTACCCAGGCACCGC--ATACTTGTTAATGGGTTCAATA 475
consensus_8789#1      TTATCGTAACAGGAAAG-ATAGTACCCAGGCACCGC--ATACTTGTTAATGGGTTCAATA 207
consensus_8789#2      CG--CGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCTTCGTGAAGGAAGGGAGA 105
                          ***  ****  ** **  ****   * *** *  ** ***  * * **     * *

consensus_8789#0      AC--ACCGATAATGTT-GTTCCGTT-CCAAAATCGGAGCAGCAAGTCGAAGATTGGCAAG 531
consensus_8789#1      AC--ACCGATAATGTT-GTTACGTT-CCAAGATCGGAGCAGCGAGTCGAAGATTGGCA-G 262
consensus_8789#2      ATCAACTCGTACTGCTCGCTATACCACTACCAACCAACAACTGCTTTCAAAGTCACCCTT 165
                      *   **   ** ** * * *      * *  * *  *  *     *  **  *   *   

consensus_8789#0      ATAGGTACGATCGTGTGCTTCCGTTGCCGGACCCTCCAGCTTACCTGCCATTATGTGTAT 591
consensus_8789#1      ATATGTACGATCGTGTGCTTCCGTTGCCGGACCCTCCAGCTTACCTGCCATTATGTGTAT 322
consensus_8789#2      CTTATCGTTCCAGTGCAATGTCTCCATTGAGTTTGCAAATGCAAACAACATTATCTCAAC 225
                       *          ***   *  *      *      * *    *     ****** *  * 

consensus_8789#0      -----TTTCCCGCAACCGACAGCCTTCGCGTATTCGACGGTGCGTTCGACATTGGCGAGA 646
consensus_8789#1      -----TTTCCCGCAACCGACAGCCTTGGCGTATTCGATGGTGC--TCGACATTGGCGAGA 375
consensus_8789#2      ACTTACTTCCCGCAACCGACAGCCTTGGCGTATTCGATGGTGCGTTCGACATTGGCGAGA 285
                            ******************** ********** *****  ***************

consensus_8789#0      AACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCC 706
consensus_8789#1      AACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCCTGCGCGTCTCCC 435
consensus_8789#2      AACTCCGACTCCCATCCAGGCAGGGCGGCACACCCAAACTGACCACCC-----------C 334
                      ************************************************           *

consensus_8789#0      AGCGCAATGTTCAGTAGGATTTGCCTCAATCCTGTCTCCTCCAGGACGGTTTTTAGCGAT 766
consensus_8789#1      AGCGCAATGTTCAGTAGGATTTGCCTCAATCCTGTCTCCTCCAGGACGGTTTTTAGCGAT 495
consensus_8789#2      AGCGCAATGTTCAGTAGGATTTGCCT---------------------------------- 360
                      **************************                                  

consensus_8789#0      TCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTT 826
consensus_8789#1      TCCGGATTGATTTCGGCGGGTGGAAATGGTCCTTCAACGCCCTGGAAGCCCGCCGCCTTT 555
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      GCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCA 886
consensus_8789#1      GCAGCACGGTAGCGACCCAGGAAGGAACTCGCTTCCAGGAACATAAAATTCAAATTCGCA 615
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      CAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAATGTGTGTGTTCACACGCT 946
consensus_8789#1      CAAAACTTAAGCGCAGTCATGTTGTGTGAGGTTGGCGAAGAATGTGTGTGTTCACACGCT 675
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      AACGAGAGAAGAACC-----------TTCACTATTTGTCACTCTTATCAGTGGGTTTGAG 995
consensus_8789#1      AACGAGAGAAGAACCGCACGCGCACCTTCACTATTTGTCACTCTTATCAGTGGGTTTGAG 735
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      AAGCACCCCCAAAAAACCAACGAACCGCAGCTGTTTGTTTTGTTTCGTGTCAATCAAACT 1055
consensus_8789#1      AAGCACCCCCAAAAAACCAACGAACCGCAGCTTTTTGTTTTGTTTCGTGTCAATCAAACT 795
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      ACCAACAGTGCGTGTAATTAATTAACCTTTCCGGGTGCGTTTAGAGAACACAAGACCGCC 1115
consensus_8789#1      AGCAGCAGTGCGTGAAATTAATTAACCTTTCCGGGTGCGTTTAGAGAACACAAGACCGCC 855
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      ACACCAAACCACAAACAACACTGGGCTGGTGCTGGTTTGATTTCTCCC-TTGTGGGTGGT 1174
consensus_8789#1      ACACCAAACCACAAACAACACTGGGCTGGTGCTGGTGTGATTTCTCCCCTTGTGGGTGGT 915
consensus_8789#2      ------------------------------------------------------------
                                                                                  

consensus_8789#0      TACGGCGG 1182
consensus_8789#1      TAGGGGT- 922
consensus_8789#2      --------
                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)