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Anopheles gambiae
cluster # 8806 cluster # 8806       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8806#0 length = 1985 sequences # 11  
consensus_8806#1 length = 1014 sequences # 1  

consensusID : consensus_8806#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1985
fasta sequence
                              [AATCCCCCGAGGTTTATGGGAAAAAGATAAAACTGCNAATATGGGACACAGCGGGACAGGAACGATTCCGTACAATCACGACCGCCTATTACCGGGGAGCCATGGGCATACATGCTGGTATACGACATCACACAGGAGAAATCGTTCGAGAACATTAAAAACTGGCATTAGAAACATCGAAGAAAATGCGGCAGCCGACGTGGAAAAGATGCTGCTCGGCAATAAGTGTGAGCTTAATGAA-AAA-AGACAGGTTACCCGAGTCCGTGGTGAACAGCTAGCTGTAGAGTATGGTATTAAATTTATGGAAACATCTGCGAAGGCAAGCATCAACGTGGACGACGCGTTTTTCACTCTTGCCCGGGATATTAAGTGTAAAATGGAAAAGCGAATGGA-AGCAAACAACCCACCGAA-AGGTGGCCATCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAA-TCT-GTTTT---GACCTTGCAATAGTCCTATTAATAATTATTACT-TTTTTATATAACACACTAA-A-TA-A-TAA-TTATCACTATT-ATTATTTAA--AAT-G-TATGTAAACGGCTGG-TGTCG-AG-GGACAACGGATTCG--CAAATGCAACATTCATCACTACACGTCACAT-TCTCTCTCACACACACACACACACACATACACACCGAAAT-GGGGTGGAAGGGAGAAAGATTTCTCCTCTTCACTTGATTTTGCCCGAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTTGTAAAATGGATTCGTCATACATATTCTCAGATCGAACCGTTTCAAGGGTGGTGATTTCTGA-AAAAAGGCATTCTTACACTTTAAGAATG--CACACACACACACTGCGTAAGTTAGGATGTATTTTACGACACAAATCCATTCGAACGAAAGGAAAACAAAAGCAATTGAAAGGAAATCGCTTCGAAACGAATGTTAGGCTTTTCTGTTTTAGAG-TAACGATGGTTTCGGAAGAGCATGGAATTCTAGAACTCAACATTCAATATTCTTCGACAATGGCTGTAGCTGTTTTTTGGAAGGGAAACATGTAAAGCAAAGCGCGTCGCTCTAGGAAATAGAGATGTCATCATTAAACCCCCATTACCATCATGTGTGTATTTTTGTGCAAACCCACAAAACACAACGGTGAGAACACTTCAGCGGCAGGGTAGCGGAATTGTGGGTAGGGGAAGTTTTCCTTTACCATTCCTTACGCGTCCATCTGGATTACGATCCTTTTCTATAGGCTCAACACAGGCTCCTTGCTAAAATCAGTCAAAAAAGTGGCCCCGAAAAAGCAATAAACGCATGTAAACAGTCAACTACAATGGCCATGCGTCCAGGAGAGCGTAGTCGTCGTACCAATTACCACCCATCATTCCATCAGCAACATAGTTGATATTGTTTTATCGTGTCTCGCGTAAGCTTGCTGACGACCAAGTCGTTGTAACGTAAATTATGATACGTAAACACACCAATAGGCAGGGCTAAACAAACATTATTTGCGGATTTCGTATCTCCTCTAGACATTAGTTGTGGTGTGAGCAGTCCAGACCGCAAGGGCGTAGACAGAATTCGATGC-AACTCCTCCTCGATCATTCATCGTTATCATAGCACGATGCAGCTCCTCCGGTGCCAGATTCACAGAATGCAAAACTGTAGTGTCCCTGTCAGTACCATAACCATAATATCGTGTGCGCTTGGGCATGTCTGTACTCTGCAGCAATGGTAGGTGTGCGTGTACGTGGCCAAGAACTGGTTGGGAGGGAAACGTCCTCACGTCGGACCTCTCGTTCTTCTTCGCTCAATCCTTTCATTTTTCACCCCGCCCACAAACACACACGCGCGAACATTCATATGGTATAGTCTTTTTGAAAGGTCAAATTAACGTGATCCGGGGAATGTGTGGGTTGATGGATGTAGAATTTAAAAAATAATAAAAAAAAATC]

[+] EMBL AL692688             [AATCCCCCGAGGTTTATGGGAAAAAGATAAAACTGCNAATATGGGACACAGCGGGACAGGAACGATTCCGTACAATCACGACCGCCTATTACCGGGGAGCCATGGGCATACATGCTGGTATACGACATCACACAGGAGAAATCGTTCGAGAACATTAAAAACTGGCATTAGAAACATCGAAGAAAATGCGGCAGCCGACGTGGAAAAGATGCTGCTCGGCAATAAGTGTGAGCTTAATGAACAAACAGACAGGTTACCCGAGTCCGTGGTGAACAGCTAGCTGTAGAGTATGGTATTAAATTTATGGAAACATCTGCGAAGGCAAGCATCAACGTGGACGATGCGTTCTTCACTCTTGCCCGGGATATTAAGTGTAAAATGGAAAAGCGAATGGACAGCAAACAACCCACCGAACAGGTGGCCATCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAACTCTAGTCCTCNCGACCTTGCAATAGTCCTATTAATAATTATTACTATACTCATATAACACACTAACACTACACTAACTTATCACTATTNATTATTTAANNNCTCGCTATGTAAACGGCTGGCTGTCGCAGCGGACAACGGATTCGCCCACATGCAACATTCATCACTACACGTCACATNTCTCTCTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM577563             [                                                                                                                      ccgACGACATCACACAGGAGAAATCGTTCGAGAACATTAAAAACTGG ATTAGAAACATCGAAGAAAATGCGGCAGCCGACGTGGAAAAGATGCTGCTCGGCAATAAGTGTGAGCTTAATGAA AAA AGACAGGTTACCCGAGTCCGTGGTGAACAGCTAGCTGTAGAGTATGGTATTAAATTTATGGAAACATCTGCGAAGGCAAGCATCAACGTGGACGACGCGTTTTTCACTCTTGCCCGGGATATTAAGTGTAAAATGGAAAAGCGAATGGA AGCAAACAACCCACCGAA AGGTGGCCATCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAA TCT GTTTT   GACCTTGCAATAGTCCTATTAATAATTATTACT TTTTTATATAACACACTAA A TA A TAA TTATCACTATT ATTATTTAA  AAT G TATGTAAACGGCTGG TGTCG AG GGACAACGGATTCG  CAAATGCAACATTCATCACTACACGTCACAT TCTCTCTCACACACACACACACACACATACACACCGAAATGGGGGTGGAAGGGAGAAAGATTTCTCCTCTTCACTTGATTTTGCCCGAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX618237             [                                                                                                                                                                                                                             ATAAGTGTGAGCTTAATGAA AAA AGACAGGTTACCCGAGTCCGTGGTGAACAGCTAGCTGTAGAGTATGGTATTAAATTTATGGAAACATCTGCGAAGGCAAGCATCAACGTGGACGACGCGTTTTTCACTCTTGCCCGGGATATTAAGTGTAAAATGGAAAAGCGAATGGA AGCAAACAACCCACCGAA AGGTGGCCATCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAA TCT GTTTT   GACCTTGCAATAGTCCTATTAATAATTATTACT TTTTTATATAACACACTAA A TA A TAA TTATCACTATT ATTATTTAA  AAT G TATGTAAACGGCTGG TGTCG AG GGACAACGGATTCG  CAAATGCAACATTCATCACTACACGTCACAT TCTCTCTCACACACACACACACACACATACACACCGAAAT GGGGTGGAAGGGAGAAAGATTTCTCCTCTTCACTTGATTTTGCCCGAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTTGTAAAATGGATTCGTCATACATATTCTCAGATCGAACCGTTTCAAGGGTGGTGATTTCTGA AAAAAGGCATTCTTACACTTTAAGAATG  CACACACACACACTGCGTAAGTTAGGATGTATTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AGA283571            [                                                                                                                                                                                                                                                         CAGGTTACCCGAGTCCGTGGTGAACAGTTAGCTGTAGAGTATGGTATTAAATTTATGGAAACATCTGCGAAGGCAAGCATCAACGTGGACGACGCGTTTTTCACTCTTGCCCGGGATATTAAGTGTAAAATGGAAAAGCGAATGGA AGCAAACAACCCACCGAA AGGTGGCCATCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAA TCT GTTTT   GACCTTGCAATAGTCCTATTACTAATTATTACT TTTTTATATAACACAGTAA A TA A TAA TTATCACTCTT ATTATTTAA  AAaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX625996             [                                                                                                                                                                                                                                                                                                                                                  CGACGCGTTTTTCACTCTTGCCCGGGATATTAAGTGTAAAATGGAAAAGCGAATGGA AGCAAACAACCCACCGAA AGGTGGCCATCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAA TCT GTTTT   GACCTTGCAATAGTCCTATTAATAATTATTACT TTTTTATATAACACACTAA A TA A TAA TTATCACTATT ATTATTTAA  AAT G TATGTAAACGGCTGG TGTCG AG GGACAACGGATTCG  CAAATGCAACATTCATCACTACACGTCACAT TCTCTCTCACACACACACACACACACATACACACCGAAAT GGGGTGGAAGGGAGAAAGATTTCTCCTCTTCACTTGATTTTGCCCGAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTTGTAAAATGGATTCGTCATACATATTCTCAGATCGAACCGTTTCAAGGGTGGTGATTTCTGA AAAAAGGCATTCTTACACTTTAAGAATG  CACACACACACACTGCGTAAGTTAGGATGTATTTTACGACACAAATCCATTCGAACGAAAGGAAAACAAAAGCAATTGAAAGGAAATCGCTTCGAAACGAATGTTAGGCTTTTCTGTTTTAGAG TAACGATGGTTTCGGAAGAGCATGGAATTCTAGAACTCAACATTCAATATTCTTCGACAATGGCTGTAGCTGTTTTTTGGAAGGGAAACATGTAAAGCAAAGCGCGTCGCTCTANGAAATANAGATGTCATCATTAAA CCCCATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX620280             [                                                                                                                                                                                                                                                                                                                                                   GATGCGTTCTTCACTCTTGCCCGGGATATTAAGTGTAAAATGGAAAAGCGAATGGA AGCAAACAACCCACCGAA AGGTGGCCATCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAA TCT GTTTT   GACCTTGCAATAGTCCTATTAATAATTATTACT TTTTTATATAACACACTAA A TA A TAA TTATCACTATT ATTATTTAA  AAT G TATGTAAACGGCTGG TGTCG AG GGACAACGGATTCG  CAAATGCAACATTCATCACTACACGTCACAT TCTCTCT  CACACACACACACACACATACACACCGAAAT GGGGTGGAAGGGAGAAAGATGTCTCCTCTTCACTTGATTTTGCCCGAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTTGTAAAATGGATTCGTCATACATATTCTCAGATCGAACCGATTCAAGGGTGGTGATTTCTGACAAAAAGGCATTCTTACACTTTAAGAATGCACACACACACACACTGCGTAAGTTAGGATGTATTTTACGACACAAATCCATTCGAACGAAAGGAAAACAAAAGCAATTGAAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX607316             [                                                                                                                                                                                                                                                                                                                                                                       CCGGGATATTAAGTGTAAAATGGAAAAGCGAATGGA AGCAAACAACCCACCGAA AGGTGGCCATCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAA TCT GTTTT   GACCTTGCAATAGTCCTATTAATAATTATTACT TTTTTATATAACACACTAA A TA A TAA TTATCACTATT ATTATTTAA  AAT G TATGTAAACGGCTGG TGTCG AG GGACAACGGATTCG  CAAATGCAACATTCATCACTACACGTCACAT TCTCTCTCACACACACACACACACACATACACACCGAAAT GGGGTGGAAGGGAGAAAGATTTCTCCTCTTCACTTGATTTTGCCCGAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTTGTAAAATGGATTCGTCATACATATTCTCAGATCGAACCGTTTCAAGGGTGGTGATTTCTGA AAAAAGGCATTCTTACACTTTAAGAATG  CACACACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX613566             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGAGTTGGTTATCGAAGTGCAA TCT GTTTT   GACCTTGCAATAGTCCTATTAATAATTATTACT TTTTTATATAACACACTAA A TA A TAA TTATCACTATT ATTATTTAA  AAT G TATGTAAACGGCTGG TGTCG AG GGACAACGGATTCG  CAAATGCAACATTCATCACTACACGTCACAT TCTCTCTCACACACACACACACACACATACACACCGAAAT GGGGTGGAAGGGAGAAAGATTTCTCCTCTTCACTTGATTTTGCCCGAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTTGTAAAATGGATTCGTCATACATATTCTCAGATCGAACCGTTTCAAGGGTGGTGATTTCTGA AAAAAGGCATTCTTACACTTTAAGAATG  CACACACACACACTGCGTAAGTTAGGATGTATTTTACGACACAAATCCATTCGAACGAAAGGAAAACAAAAGCAATTGAAAGGAAATCGCTTCGAAACGAATGTTAGGCTTTTCTGTTTTAGAG TAACGATGGTTTCGGAAGAGCATGGAATTCTAGAACTCAACATTCAATATTCTTCGACAATGGCTGTAGCTGTTTTTTGGAAGGGAAACATGTAAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX605511             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CACACACACACACACATACACACCGAAAT GGGGTGGAAGGGAGAAAGATTTCTCCTCTTCACTTGATTTTGCCCGAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTTGTAAAATGGATTCGTCATACATATTCTCAGATCGAACCGTTTCAAGGGTGGTGATTTCTGA AAAAAGGCATTCTTACACTTTAAGAATG  CACACACACACACTGCGTAAGTTAGGATGTATTTTACGACACAAATCCATTCGAACGAAAGGAAAACAAAAGCAATTGAAAGGAAATCGCTTCGAAACGAATGTTAGGCTTTTCTGTTTTAGAG TAACGATGGTTTCGGAAGAGCATGGAATTCTAGAACTCAACATTCAATATTCTTCGACAATGGCTGTAGCTGTTTTTTGGAAGGGAAACATGTAAAGCAAAGCGCGTCGCTCTAGGAAATAGAGATGTCATCATTAAACCCCCATTACCATCATGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX626737             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGTGGTGATTTCTGACAAAAAGGCATTCTTACACTTTAAGAATGCACACACACACACACTGCGTAAGTTAGGATGTATTTTACGACACAAATCCATTCGAACGAAAGGAAAACAAAAGCAATTGAAAGGAAATCGCTTCGAAACGAATGTTAGGCTTTTCTGTTTTAGAGCAAACGATGGTTTCGGAAGAGCATGGAATTCTAGAACTCAACATTCAATATTCTTCGACAATGGCTGTAGCTGTTTTTTGGAAGGGAAACATGTAAAGCAAAGCGCGTCGCTCTAGAAAATAGAGATGTCATCATTAAACCCCCATTACCATCATGTGTGTATTTTTGTGCAAACCCACAAAACACAACGGTGAGAACACTTCAGCGGCAGGGTAGCGGAATTGTGGGTAGGGGAAGTTTTCCTTTACCATTCCTTACGCGTCCATCTGGATTACGATCCTTTTCTATAGGCTCAACACAGGCTCCTTGCTAAAATCAGTCAAAAAAGTGGCCCCGAAAAAGCAATAAACGCATGTAAACAGTCAACTACAATGGCCATGCGTCCAGGAGAGCGTAGTCGTCGTACCAATTACCACCCATCATTCCATCAGCAACATAGTTGATATTGTTTTATCGTGTCTCGCGTAAGCTTGCTGACGACCAAGTCGTTGTAACGTAAATTATGATACGTAAACACACCAATAGGCAGGGCTAAACAAACATTATTTGCGGATTTCGTATCTCCTCTAGACATTAGTTGTGGTGTGAGCAGTCCAGACCGCAAGGGCGTAGACAGAATTCGATGC AACTCCTCCTCGATCATTCATCGTTATCATAGC                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX618910             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TACCACCCATCATTCCATCAGCAACATAGTTGATATTGTTTTATCGTGTCTCGCGTAAGCTTGCTGACGACCAAGTCGTTGTAACGTAAATTATGATACGTAAACACACCAATAGGCAGGGCTAAACAAATATTATTTGCGGATTTCGCATCTCCTCTAGACA TAGTTGTGGTGTGAGCAGTCCAGACCGCAAGGGCGTAGACAGAATGCGATGCAAACTCCTCCTCGATCATTCATCGTTATCATATCACGATGCAGCTCCTCCGGTGCCAGATTCACAGAATGCAAAACTGTAGTGTCCCTGTCAGTACCATAACCATAATATCGTGTGCGCTTGGGCATGTCTGTACTCTGCAGCAATGGTAGGTGTGCGTGTACGTGGCCAAGAACTGGTTGGGAGGGAAACGTCCTCACGTCGGACCTCTCGTTCTTCTTCGCTCAATCCTTTCATTTTTCACCCCGCCCACAAACACACACGCGCGAACATTCATATGGTATAGTCTTTTTGAAAGGTCAAATTAACGTGATCCGGGGAATGTGTGGGTTGATGGATGTAGAATTTAAAAAATAATAAAAAAAAATC]


>consensus_8806#0 AATCCCCCGAGGTTTATGGGAAAAAGATAAAACTGCNAATATGGGACACAGCGGGACAGG AACGATTCCGTACAATCACGACCGCCTATTACCGGGGAGCCATGGGCATACATGCTGGTA TACGACATCACACAGGAGAAATCGTTCGAGAACATTAAAAACTGGCATTAGAAACATCGA AGAAAATGCGGCAGCCGACGTGGAAAAGATGCTGCTCGGCAATAAGTGTGAGCTTAATGA AAAAAGACAGGTTACCCGAGTCCGTGGTGAACAGCTAGCTGTAGAGTATGGTATTAAATT TATGGAAACATCTGCGAAGGCAAGCATCAACGTGGACGACGCGTTTTTCACTCTTGCCCG GGATATTAAGTGTAAAATGGAAAAGCGAATGGAAGCAAACAACCCACCGAAAGGTGGCCA TCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAATCT GTTTTGACCTTGCAATAGTCCTATTAATAATTATTACTTTTTTATATAACACACTAAATA ATAATTATCACTATTATTATTTAAAATGTATGTAAACGGCTGGTGTCGAGGGACAACGGA TTCGCAAATGCAACATTCATCACTACACGTCACATTCTCTCTCACACACACACACACACA CATACACACCGAAATGGGGTGGAAGGGAGAAAGATTTCTCCTCTTCACTTGATTTTGCCC GAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTT GTAAAATGGATTCGTCATACATATTCTCAGATCGAACCGTTTCAAGGGTGGTGATTTCTG AAAAAAGGCATTCTTACACTTTAAGAATGCACACACACACACTGCGTAAGTTAGGATGTA TTTTACGACACAAATCCATTCGAACGAAAGGAAAACAAAAGCAATTGAAAGGAAATCGCT TCGAAACGAATGTTAGGCTTTTCTGTTTTAGAGTAACGATGGTTTCGGAAGAGCATGGAA TTCTAGAACTCAACATTCAATATTCTTCGACAATGGCTGTAGCTGTTTTTTGGAAGGGAA ACATGTAAAGCAAAGCGCGTCGCTCTAGGAAATAGAGATGTCATCATTAAACCCCCATTA CCATCATGTGTGTATTTTTGTGCAAACCCACAAAACACAACGGTGAGAACACTTCAGCGG CAGGGTAGCGGAATTGTGGGTAGGGGAAGTTTTCCTTTACCATTCCTTACGCGTCCATCT GGATTACGATCCTTTTCTATAGGCTCAACACAGGCTCCTTGCTAAAATCAGTCAAAAAAG TGGCCCCGAAAAAGCAATAAACGCATGTAAACAGTCAACTACAATGGCCATGCGTCCAGG AGAGCGTAGTCGTCGTACCAATTACCACCCATCATTCCATCAGCAACATAGTTGATATTG TTTTATCGTGTCTCGCGTAAGCTTGCTGACGACCAAGTCGTTGTAACGTAAATTATGATA CGTAAACACACCAATAGGCAGGGCTAAACAAACATTATTTGCGGATTTCGTATCTCCTCT AGACATTAGTTGTGGTGTGAGCAGTCCAGACCGCAAGGGCGTAGACAGAATTCGATGCAA CTCCTCCTCGATCATTCATCGTTATCATAGCACGATGCAGCTCCTCCGGTGCCAGATTCA CAGAATGCAAAACTGTAGTGTCCCTGTCAGTACCATAACCATAATATCGTGTGCGCTTGG GCATGTCTGTACTCTGCAGCAATGGTAGGTGTGCGTGTACGTGGCCAAGAACTGGTTGGG AGGGAAACGTCCTCACGTCGGACCTCTCGTTCTTCTTCGCTCAATCCTTTCATTTTTCAC CCCGCCCACAAACACACACGCGCGAACATTCATATGGTATAGTCTTTTTGAAAGGTCAAA TTAACGTGATCCGGGGAATGTGTGGGTTGATGGATGTAGAATTTAAAAAATAATAAAAAA AAATC



consensusID : consensus_8806#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1014
fasta sequence
                              [AGATCCCCTAGGTAANGTGGACGATGCGTTCTTCACTCTTGCCCGGGATATTAAGTGTAAAATGGAAAAGCGAATGGAAGCAAACAACCCACCGAAAGGTGGCCATCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAATCTGTTTTGACCTTGCAATAGTCCTATTAATAATTATTACTTTTTTATATAACACACTAAATAATAATTATCACTATTATTATTTAAAATGTATGTAAACGGCTGGTGTCGAGGGACAACGGATTCGCAAATGCAACATTCATCACTACACGTCACATTCTCTCTCACACACACACACACACATACACACCGAAATGGGGTGGAAGGGAGAAAGATGTCTCCTCTTCACTTGATTTTGCCCGAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTTGTACACAATGGATTCGTCATACATATTCTCAGGATCGAACCGAGTTCAAGGGTGGTGAGTTTCTGACCAAAAAGGCATTCTTACAGCTTTAAGAATGCACANAGCACACACACTGCGTACAGTCAGGATGTATCTCACGACACAAATCCAGTTCGAACGAATNGGCCATAACANATANGGCAGATTGACGCAGGCACNTCGCTTCGAAAACGAATGTTCAGCGCTATGCNGCCTGTTGNTCAGAGGCANNACGACGACTGGGTNTTCGGAAGAAGGCAGTGGCANNTGCTAGGAACCTCAACATTCACATAGTTCCTTTACCGGACNCNCAAGTGGGCCTAGGTACGCCTGGTCAGCGCGNTGGGGCANATCGGGGGGACAACACCCAATTAGGTTCAACACAGGGCCCACAAACGGCGCGCCCGGTCCAGGGCNTTCCCTTATAAGNAAACGGANTAACTGCAGNATTTGGTCCCNACTCCCAATTTGTNANACAAGCCNCNCCCNCCCGATTNGAAGACAGNACACATCAGCAGTCCGACGACACCNCN]

[+] EMBL AL934863             [AGATCCCCTAGGTAANGTGGACGATGCGTTCTTCACTCTTGCCCGGGATATTAAGTGTAAAATGGAAAAGCGAATGGAAGCAAACAACCCACCGAAAGGTGGCCATCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAATCTGTTTTGACCTTGCAATAGTCCTATTAATAATTATTACTTTTTTATATAACACACTAAATAATAATTATCACTATTATTATTTAAAATGTATGTAAACGGCTGGTGTCGAGGGACAACGGATTCGCAAATGCAACATTCATCACTACACGTCACATTCTCTCTCACACACACACACACACATACACACCGAAATGGGGTGGAAGGGAGAAAGATGTCTCCTCTTCACTTGATTTTGCCCGAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTTGTACACAATGGATTCGTCATACATATTCTCAGGATCGAACCGAGTTCAAGGGTGGTGAGTTTCTGACCAAAAAGGCATTCTTACAGCTTTAAGAATGCACANAGCACACACACTGCGTACAGTCAGGATGTATCTCACGACACAAATCCAGTTCGAACGAATNGGCCATAACANATANGGCAGATTGACGCAGGCACNTCGCTTCGAAAACGAATGTTCAGCGCTATGCNGCCTGTTGNTCAGAGGCANNACGACGACTGGGTNTTCGGAAGAAGGCAGTGGCANNTGCTAGGAACCTCAACATTCACATAGTTCCTTTACCGGACNCNCAAGTGGGCCTAGGTACGCCTGGTCAGCGCGNTGGGGCANATCGGGGGGACAACACCCAATTAGGTTCAACACAGGGCCCACAAACGGCGCGCCCGGTCCAGGGCNTTCCCTTATAAGNAAACGGANTAACTGCAGNATTTGGTCCCNACTCCCAATTTGTNANACAAGCCNCNCCCNCCCGATTNGAAGACAGNACACATCAGCAGTCCGACGACACCNCN]


>consensus_8806#1 AGATCCCCTAGGTAANGTGGACGATGCGTTCTTCACTCTTGCCCGGGATATTAAGTGTAA AATGGAAAAGCGAATGGAAGCAAACAACCCACCGAAAGGTGGCCATCAGCTTAAGCCGCA GGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAATCTGTTTTGACCTTGCAA TAGTCCTATTAATAATTATTACTTTTTTATATAACACACTAAATAATAATTATCACTATT ATTATTTAAAATGTATGTAAACGGCTGGTGTCGAGGGACAACGGATTCGCAAATGCAACA TTCATCACTACACGTCACATTCTCTCTCACACACACACACACACATACACACCGAAATGG GGTGGAAGGGAGAAAGATGTCTCCTCTTCACTTGATTTTGCCCGAAATGTAAAAGCGCAA AACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTTGTACACAATGGATTCGT CATACATATTCTCAGGATCGAACCGAGTTCAAGGGTGGTGAGTTTCTGACCAAAAAGGCA TTCTTACAGCTTTAAGAATGCACANAGCACACACACTGCGTACAGTCAGGATGTATCTCA CGACACAAATCCAGTTCGAACGAATNGGCCATAACANATANGGCAGATTGACGCAGGCAC NTCGCTTCGAAAACGAATGTTCAGCGCTATGCNGCCTGTTGNTCAGAGGCANNACGACGA CTGGGTNTTCGGAAGAAGGCAGTGGCANNTGCTAGGAACCTCAACATTCACATAGTTCCT TTACCGGACNCNCAAGTGGGCCTAGGTACGCCTGGTCAGCGCGNTGGGGCANATCGGGGG GACAACACCCAATTAGGTTCAACACAGGGCCCACAAACGGCGCGCCCGGTCCAGGGCNTT CCCTTATAAGNAAACGGANTAACTGCAGNATTTGGTCCCNACTCCCAATTTGTNANACAA GCCNCNCCCNCCCGATTNGAAGACAGNACACATCAGCAGTCCGACGACACCNCN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8806#0      AATCCCCCGAGGTTTATGGGAAAAAGATAAAACTGCNAATATGGGACACAGCGGGACAGG 60
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      AACGATTCCGTACAATCACGACCGCCTATTACCGGGGAGCCATGGGCATACATGCTGGTA 120
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      TACGACATCACACAGGAGAAATCGTTCGAGAACATTAAAAACTGGCATTAGAAACATCGA 180
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      AGAAAATGCGGCAGCCGACGTGGAAAAGATGCTGCTCGGCAATAAGTGTGAGCTTAATGA 240
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      AAAAAGACAGGTTACCCGAGTCCGTGGTGAACAGCTAGCTGTAGAGTATGGTATTAAATT 300
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      TATGGAAACATCTGCGAAGGCAAGCATCAACGTGGACGACGCGTTTTTCACTCTTGCCCG 360
consensus_8806#1      -------AGATCCCCTAGG--------TAANGTGGACGATGCGTTCTTCACTCTTGCCCG 45
                             * ***  * * *         ** ******** ***** **************

consensus_8806#0      GGATATTAAGTGTAAAATGGAAAAGCGAATGGAAGCAAACAACCCACCGAAAGGTGGCCA 420
consensus_8806#1      GGATATTAAGTGTAAAATGGAAAAGCGAATGGAAGCAAACAACCCACCGAAAGGTGGCCA 105
                      ************************************************************

consensus_8806#0      TCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAATCT 480
consensus_8806#1      TCAGCTTAAGCCGCAGGTCGAACCACGGAAGGCACCGAGTTGGTTATCGAAGTGCAATCT 165
                      ************************************************************

consensus_8806#0      GTTTTGACCTTGCAATAGTCCTATTAATAATTATTACTTTTTTATATAACACACTAAATA 540
consensus_8806#1      GTTTTGACCTTGCAATAGTCCTATTAATAATTATTACTTTTTTATATAACACACTAAATA 225
                      ************************************************************

consensus_8806#0      ATAATTATCACTATTATTATTTAAAATGTATGTAAACGGCTGGTGTCGAGGGACAACGGA 600
consensus_8806#1      ATAATTATCACTATTATTATTTAAAATGTATGTAAACGGCTGGTGTCGAGGGACAACGGA 285
                      ************************************************************

consensus_8806#0      TTCGCAAATGCAACATTCATCACTACACGTCACATTCTCTCTCACACACACACACACACA 660
consensus_8806#1      TTCGCAAATGCAACATTCATCACTACACGTCACATTCTCTCTCACACACACACACACACA 345
                      ************************************************************

consensus_8806#0      CATACACACCGAAATGGGGTGGAAGGGAGAAAGATTTCTCCTCTTCACTTGATTTTGCCC 720
consensus_8806#1      --TACACACCGAAATGGGGTGGAAGGGAGAAAGATGTCTCCTCTTCACTTGATTTTGCCC 403
                        ********************************* ************************

consensus_8806#0      GAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTT 780
consensus_8806#1      GAAATGTAAAAGCGCAAAACAAACGAAGCGTTTTCACGCGGACGTTGGCTCATGGAGTTT 463
                      ************************************************************

consensus_8806#0      GTAAA--ATGGATTCGTCATACATATTCTCAG-ATCGAACCGT-TTCAAGGGTGGTGA-T 835
consensus_8806#1      GTACACAATGGATTCGTCATACATATTCTCAGGATCGAACCGAGTTCAAGGGTGGTGAGT 523
                      *** *  ************************* *********  ************** *

consensus_8806#0      TTCTGA--AAAAAGGCATTCTTACA-CTTTAAGAATGCACACA---CACACACTGCGTA- 888
consensus_8806#1      TTCTGACCAAAAAGGCATTCTTACAGCTTTAAGAATGCACANAGCACACACACTGCGTAC 583
                      ******  ***************** *************** *   ************* 

consensus_8806#0      AGTTAGGATGTATTTTACGACACAAATCCA-TTCGAACGAAAGGAAAACAAAAGCAATTG 947
consensus_8806#1      AGTCAGGATGTATCTCACGACACAAATCCAGTTCGAACGAATNGGCCATAACAN--AT-- 639
                      *** ********* * ************** **********  *   * ** *   **  

consensus_8806#0      AAAGGAAATCGCTTCGAAACGAATGTTAGGCTTTTCTGTTTTAGAGT-AACGATGGTTTC 1006
consensus_8806#1      ANGGCAGATTG-------ACG-----CAGGCACNTCGCTTCGAAAACGAATGTTCAGCGC 687
                      *  * * ** *       ***      ****   **  **  * *   ** * *     *

consensus_8806#0      GGAAGAGCATGGAATTCTAGAACTCAACATTCAATA--TTCTTCGACAATGGCTGTAGCT 1064
consensus_8806#1      TATGCNGCCTGTTGNTCAGAGGCANNACGACGACTGGGTNTTCGGAAGAAGGCAGTGGCA 747
                            ** **    **     *   **    * *   *  *  **  * *** ** ** 

consensus_8806#0      GTTTTTTGGAAGGGAAACATGTAAAGCAAAGCGCGTCGCTCTAGGAAATAGAGATGTCAT 1124
consensus_8806#1      NNTGCTAGGAACCTCAACATTCA---CATAGTTCCT--TTACCGGACNCNCAAGTGGGCC 802
                        *  * ****    *****  *   ** **  * *   *   ***     *  **    

consensus_8806#0      CATTAAACCCCCATTACCATCATGTGTGTATTTTTGTGCAAACCCACAAAACACAACGGT 1184
consensus_8806#1      TAGGTACGCCTGGTCAGCGCGNTGGG-GCANATCGGGGGGA-----CAACACCCAAT--T 854
                       *   *  **   * * *    ** * * *  *  * *  *     *** ** ***   *

consensus_8806#0      GAGAACACTTCAGCGGCAGGGTAGCGGAATTGTGGGTAGGGGAAGTTTTCCTTTACCATT 1244
consensus_8806#1      AGGTTCAACACAG-GGCCCACAAACGGCGCGCCCGGTCCAGG--GCNTTCCCTTATAAGN 911
                        *  **   *** ***     * ***       ***   **  *  **** ***  *  

consensus_8806#0      CCTTACGCGTCCATCTGGATTACGATCCTTTTCTATAGGCTCAACACAGGCTCCTTGCTA 1304
consensus_8806#1      AAACGGANTAACTGCAGNATTTGGTCCCNACTCCCAATTTGTNANACAAGCCNCNCCCNC 971
                                 *  * * ***  *  **   **   *      * *** **  *   *  

consensus_8806#0      AAATCAGTCAAAAAAGTGGCCCCGAAAAAGCAATAAACGCATGTAAACAGTCAACTACAA 1364
consensus_8806#1      CCGATTNGAAGACAGNACACATCAGCAGTCCGACGACACCNCN----------------- 1014
                               * * *     *  *   *   * *  *   *                    

consensus_8806#0      TGGCCATGCGTCCAGGAGAGCGTAGTCGTCGTACCAATTACCACCCATCATTCCATCAGC 1424
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      AACATAGTTGATATTGTTTTATCGTGTCTCGCGTAAGCTTGCTGACGACCAAGTCGTTGT 1484
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      AACGTAAATTATGATACGTAAACACACCAATAGGCAGGGCTAAACAAACATTATTTGCGG 1544
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      ATTTCGTATCTCCTCTAGACATTAGTTGTGGTGTGAGCAGTCCAGACCGCAAGGGCGTAG 1604
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      ACAGAATTCGATGCAACTCCTCCTCGATCATTCATCGTTATCATAGCACGATGCAGCTCC 1664
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      TCCGGTGCCAGATTCACAGAATGCAAAACTGTAGTGTCCCTGTCAGTACCATAACCATAA 1724
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      TATCGTGTGCGCTTGGGCATGTCTGTACTCTGCAGCAATGGTAGGTGTGCGTGTACGTGG 1784
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      CCAAGAACTGGTTGGGAGGGAAACGTCCTCACGTCGGACCTCTCGTTCTTCTTCGCTCAA 1844
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      TCCTTTCATTTTTCACCCCGCCCACAAACACACACGCGCGAACATTCATATGGTATAGTC 1904
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      TTTTTGAAAGGTCAAATTAACGTGATCCGGGGAATGTGTGGGTTGATGGATGTAGAATTT 1964
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      AAAAAATAATAAAAAAAAATC 1985
consensus_8806#1      ---------------------
                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)