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Anopheles gambiae
cluster # 8815 cluster # 8815       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8815#0 length = 1647 sequences # 10  
consensus_8815#1 length = 803 sequences # 1  
consensus_8815#2 length = 524 sequences # 1  

consensusID : consensus_8815#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1647
fasta sequence
                              [CCGCCCACGCGTCCGCACACAGGGAAAAAAGAAACCTCCGCTTCTGAAATCGTTTATTTTCAGCCTATTTCTCATCGGCAGCAGCTTCCAGAGTAAGAGGTCCACACCGTCGTC---GTCGTCCACACCACGCAAGAGAACGGTCGTGAAAATCTCAACCGCGCAAGATCACGAACA-AGTTCACACGATCACGAACACAGGAC---GAGGGCCAGTGTGAAACGACTCTCACGACACACAGAGCAAAAGTGTATAAGCGTCA-CTGCTCGC-GGTCGAAATCAGTCAGTTTTTCACACGCATCCGGAAC-G-CCGTATCGTGCGAGACGGATCCATTTGCCATTCGTTTTGATTTGTGGCCGCCGTGCGGAAGAATTTGCCGGTTTTGCATCTTGCAAGTGGAAGATTGTGCCGAAA-AGCAGTTAAAGTAAACCGTCCCGCAGCGCTCTTTTATCGCATTTTCCAATCGCAAATTACATCATTGGTGCCAGCAGCAGAATGGACGATTCCATTGATGAGGAGGTGATCTCGGGCGGCTCAACGATCACCGTCGAGTTCAGTGGTGGAGCGGAAACTCTTTTCGGTGGTGTGAAGGAACACATCGTACCGTTGGATGGATCGAAAATAGTATTGCTCGAGGAAATGCTCCGATGGC-TAAG-GGATCATCT-GCTCACGGGTGATGCTGGTCTGTTCCTCCAGGAAAACACCGTCCGCCCCGGCATTCTGGTCATGATCAACGATACCGACTGGGATCTGATGGGCGAAACGGAGTACAT-CCTGCAGCCTGGCGATCATATCCTCTTCATTTCCACCCTCCATGGCGGATAAGCACCATGGTCGGGAAACGATACCTGTGATATACACTACTTCTACTACTACTACTACC-ACACTGCAGTATCAAGTGCTGCTGCTTCTAACTACAACTACTTCAACTGCGCCCGATCTAAATGCCGCAT-GGATCGTGAGATATTGTTATGATATGGGATGGGCGGTTTCTTTTTTAATATTACCTTAGTGTTAAGAGTGAACTGGTCTTCGTCCCTCTGTTTCCCCCTTTTGACCGTACGATACGCGCTGTTGTTTGTTGTCGTTCAGTAGCAGTAGCCCCTCTCACATGCGCAGAGCGGTACGCAAAGAAAACGGCGCGCCAAACAGGACAGACGATTAATCCTCGCTGCTGATAATAGAAAGTAAGGCTGACGTTACGGACACAGTGAGAAGCTTCTCGAGCATTATCGTACTGTTGATTGCGCGTTTTTATTTAACTCATTCGCCAACACAGCCCTCCCGTAGGCGTAGCTTGATCGCGTGAAATGATCGCACTGTCGGTAGAAGCAGTAGTTAGATTGAAAGGAAGGAGGGAAGGAAGGGGCACGAAACAGATGCACAAAAGTAACTCGTTTGATTTTGGTTTTAAAATTAATACTAAGCAGATCACTCTACTACTGTACGTACAAGTAAACCCTGACGGCGCCCCGCGACACACGCGATTCGCGATTTTTCCACCCTGGTTTCGCAAGCCGAGAGGAAGTTTCTTTTTGTATACAAATATCCCCTTCTTGTTTATATAGTACTGAAGGAGTAGGAAAGATTCAGTGAAGGAGAGGAAGAGAGAGAGAGAGAGGGAGTTTAATGGAGAAATATATACCAATTTAAG]

[+] EMBL BM577344             [CCGCCCACGCGTCCGCACACAGGGAAAAAAGAAACCTCCGCTTCTGAAATCGTTTATTTTCAGCCTATTTCTCATCGGCAGCAGCTTCCAGAGTAAGAGGTCCACACCGTCGTC   GTCGTCCACACCACGCAAGAGAACGGTCGTGAAAATCTCAACCGCGCAAGATCACGAACACAGTTCACACGATCACGAACACAGGAC   GAGGGCCAGTGTGAAACGACTCTCACGACACACAGAGCAAAAGTGTATAAGCGTCAGCTGCTCGC GGTCGAAATCAGTCAGTTTTTCACACGCATCCGGAACGG CCGTATCGTGCGAGACGGATCCATTTGCCATTCGTTTTGATTTGTGGCCGCCGTGCGGAAGAATTTGCCGGTTTTGCATCTTGCAAGTGGAAGATTGTGCCGAAA AGCAGTTAAAGTAAACCGTCCCGCAGCGCTCTTTTATCGCATTTTCCAATCGCAAATTACATCATTGGTGCCAGCAGCAGAATGGACGATTCCATTGATGAGGAGGTGATCTCGGGCGGCTCAACGATCACCGTCGAGTTCAGTGGTGGAGCGGAAACTCTTTTCGGTGGTGTGAAGGAACACATCGTACCGTTGGATGGATCGAAAATAGTATTGCTCGAGGAAATGCTCCGATGGC TAAG GGATCATCT GCTCACGGGTGATGCTGGTCTGTTCCTCCAGGAAAACACCGTCCGCCCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM616670             [CCGCCCACGCGTCC        GGAAAAAAGAAACCTCCGCTTCTGAAATCGTTTATTTTCAGCCTATTTCTCATCGGCAGCAGCTTCCAGAGTAAGAGGTCCACACCGTCGTC   GTCGTCCACACCACGCAAGAGAACGGTCGTGAAAATCTCAACCGCGCAAGATCACGAACACAGTTCACACGATCACGAACACAGGAC   GAGGGCCAGTGTGAAACGACTCTCACGACACACAGAGCAAAAGTGTATAAGCGTCAGCTGCTCGC GGTCGAAATCAGTCAGTTTTTCACACGCATCCGGAACGG CCGTATCGTGCGAGACGGATCCATTTGCCATTCGTTTTGATTTGTGGCCGCCGTGCGGAAGAATTTGCCGGTTTTGCATCTTGCAAGTGGAAGATTGTGCCGAAA AGCAGTTAAAGTAAACCGTCCCGCAGCGCTCTTTTATCGCATTTTCCAATCGCAAATTACATCATTGGTGCCAGCAGCAGAATGGACGATTCCATTGATGAGGAGGTGATCTCGGGCGGCTCAACGATCACCGTCGAGTTCAGTGGTGGAGCGGAAACTCTTTTCGGTGGTGTGAAGGAACACATCGTACCGTTGGATGGATCGAAAATAGTATTGCTCGAGGAAATGCTCCGATGGC TAAG GGATCATCT GCTCACGGGTGATGCTGGTCTGTTCCTCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CNS090VF             [                                                                                                          CCGTCGCCGCTGTCGTCCACACCACGCAAGAGATCGGTCGTGAAAATCTCAACCGCGCAAGATCACGAACA GGTTCACACGATCACGAACACAGGACGAGGAGGGCCTGTGTG AACGACTCTCACGACACACAGAGCGAAAGTGTATAAGCGTCA CTGCTCGCGGGTGGAAATCAGTCAGTTTTTCACACGCATCCGGAAC G CCGTATCGTGCGAGACGGATCCATTTGCCATTCGTTTTGATTTGTGGCCGCCGTGCGGAAGAAACTGCCGGTTTTGCATCTTGCAAGTGGAAGATTGTGCCGAAACAGCAGTTAAAGTAAACCATCCCGAGGCGCTCTTTTATCGCATTTTCCAATCGCAAATTACATCATTGGTGCCAGCAGCAGAATGGACGATTCCATTGACGAGGAGGTGATCTCCGGCGGCTCAACCATCACCGTCGAGTTCAGTGGTGGAGCGGAAACTCTTTTCGGTGGTGTGAAGGAACACATCGTACCATTGGATGGATCGAAAATAGTATTGCTCGAGGAAATGCTCCGATGGCATAAGAGGATCATCTAGCTCACGGGTGATGCTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CNS08VIS             [                                                                                                             ccgct   GTCGTCCACACCACGCAAGAGATCGGTCGTGAAAATCTCAACCGCGCAAGATCACGAACA GGTTCACACGATCACGAACACAGGACGAGGAGGGCCTGTGTGAAACGACTCTCACGACACACAGAGCGAAAGTGTATAAGCGTCA CTGCTCGCGGGTGGAAATCAGTCAGTTTTTCACACGCATCCGGAAC G CCGTATCGTGCGAGACGGATCCATTTGCCATTCGTTTTGATTTGTGGCCGCCGTGCGGAAGAAACTGCCGGTTTTGCATCTTGCAAGTGGAAGATTGTGCCGAAA AGCAGTTAAAGTAAACCATCCCGAGGCGCTCTTTTATCGCATTTTCCAATCGCAAATTACATCATTGGTGCCAGCAGCAGAATGGACGATTCCATTGACGAGGAGGTGATCTCCGGCGGCTCAACCATCACCGTCGAGTTCAGTGGTGGAGCGGAAACTCTTTTCGGTGGTGTGAAGGAACACATCGTACCATTGGATGGATCGAAAATAGTATTGCTCGAGGAAATGCTCCGATGGC TAAG GGATCATCT GCTCACGGGTGATGCTGGTCTGTTCCTCCAGGAAAACACCGTCCGCCCCGGCATTCTGGTCATGATCAACGATACCGACTGGGATCTGATGGGCGAAACGGAGTACATCCCTTTAGCCTGGCGATCATATCCTCTTCATTTCCACCCTCCATGGCGGATAAGCACCATGGTCGGGAAACGATACCTGTGATATACACTACTTCTACTACTACTACTACCAATACTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM654019             [                                                                                                                                                                                                                                                                                                       ccgCGCATCCGGAACGG CCGTATCGTGCGAGACGGATCCATTTGCCATTCGTTTTGATTTGTGGCCGCCGTGCGGAAGAATTTGCCGGTTTTGCATCTTGCAAGTGGAAGATTGTGCCGAAA AGCAGTTAAAGTAAACCGTCCCGCAGCGCTCTTTTATCGCATTTTCCAATCGCAAATTACATCATTGGTGCCAGCAGCAGAATGGACGATTCCATTGATGAGGAGGTGATCTCGGGCGGCTCAACGATCACCGTCGAGTTCAGTGGTGGAGCGGAAACTCTTTTCGGTGGTGTGAAGGAACACATCGTACCGTTGGATGGATCGAAAATAGTATTGCTCGAGGAAATGCTCCGATGGC TAAG GGATCATCT GCTCACGGGTGATGCTGGTCTGTTCCTCCAGGAAAACACCGTCCGCCCCGGCATTCTGGTCATGATCAACGATACCGACTGGGATCTGATGGGCGAAACGGAGTACAT CCTGCAGCCTGGCGATCATATCCTCTTCATTTCCACCCTCCATGGCGGATAAGCACCATGGTCGGGAAACGATACCTGTGATATACACTACTTCTACTACTACTACTACC ACACTGCAGTATCAAGTGCTGCTGCTTCTAACTACAACTACTTCAACTGCGCCCGATCTAAATGCCGCATGGGATCGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CNS08F97             [                                                                                                                                                                                                                                                                                                              TCCGGAAC GCCCGTATCGTGCGAGATGGATCCATTTGCCATTCGTTTTGATTTGTGGCCGCCGTGCGGAAGAAACTGCCGGTTTTGCATCTTGCAAGTGGAAGATTGTGCCGAAA AGCAGTTAAAGTAAACCATCCCGAGGCGCTCTTTTATCGCATTTTCCAATCGCAAATTACATCATTGGTGCCAGCAGCAGAATGGACGATTCCATTGACGAGGAGGTGATCTCCGGCGGCTCAACCATCACCGTCGAGTTCAGTGGTGGAGCGGAAACTCTTTTCGGTGGTGTGAAGGAACACATCGTACCATTGGATGGATCGAAAATAGTATTGCTCGAGGAAATGCTCCGATGGC TAAG GGATCATCT GCTCACGGGTGATGCTGGTCTGTTCCTCCAGGAAAACACCGTCCGCCCCGGCATTCTGGTCATGATCAACGATACCGACTGGGATCTGATGGGCGAAACGGAGTACAT CCTGCAGCCTGGCGATCATATCCTCTTCATTTCCACCCTCCATGGCGGATAAGCACCATGGTCGGGAAACGATACCTGTGATATACACTACTTCTACTACTACTACTACC ACtaatac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM581151             [                                                                                                                                                                                                                                                                                                                 ccgcg G CCGTATCGTGCGAGACGGATCCATTTGCCATTCGTTTTGATTTGTGGCCGCCGTGCGGAAGAATTTGCCGGTTTTGCATCTTGCAAGTGGAAGATTGTGCCGAAA AGCAGTTAAAGTAAACCGTCCCGCAGCGCTCTTTTATCGCATTTTCCAATCGCAAATTACATCATTGGTGCCAGCAGCAGAATGGACGATTCCATTGATGAGGAGGTGATCTCGGGCGGCTCAACGATCACCGTCGAGTTCAGTGGTGGAGCGGAAACTCTTTTCGGTGGTGTGAAGGAACACATCGTACCGTTGGATGGATCGAAAATAGTATTGCTCGAGGAAATGCTCCGATGGC TAAG GGATCATCT GCTCACGGGTGATGCTGGTCTGTTCCTCCAGGAAAACACCGTCCGCCCCGGCATTCTGGTCATGATCAACGATACCGACTGGGATCTGATGGGCGAAACGGAGTACAT CCTGCAGCCTGGCGATCATATCCTCTTCATTTCCACCCTCCATGGCGGATAAGCACCATGGTCGGGAAACGATACCTGTGATATACACTACTTCTACTACTACTACTACC ACACTGCAGTATCAAGTGCTGCTGCTTCTAACTACAACTACTTCAACTGCGCCCGATCTAAATGCCGCAT GGATCGTGAGATATTGTTATGATATGGGATGGGCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX604683             [                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTCTTTTATCGCATTTTCCAATCGCAAATTACATCATTGGTGCCAGCAGCAGAATGGACGATTCCATTGATGAGGAGGTGATCTCGGGCGGCTCAACGATCACCGTCGAGTTCAGTGGTGGAGCGGAAACTCTTTTCGGTGGTGTGAAGGAACACATCGTACCGTTGGATGGATCGAAAATAGTATTGCTCGAGGAAATGCTCCGATGGC TAAG GGATCATCT GCTCACGGGTGATGCTGGTCTGTTCCTCCAGGAAAACACCGTCCGCCCCGGCATTCTGGTCATGATCAACGATACCGACTGGGATCTGATGGGCGAAACGGAGTACAT CCTGCAGCCTGGCGATCATATCCTCTTCATTTCCACCCTCCATGGCGGATAAGCACCATGGTCGGGAAACGATACCTGTGATATACACTACTTCTACTACTACTACTACC ACACTGCAGTATCAAGTGCTGCTGCTTCTAACTACAACTACTTCAACTGCGCCCGATCTAAATGCCGCAT GGATCGTGAGATATTGTTATGATATGGGATGGGCGGTTTCTTTTTTAATATTACCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CNS090VG             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ttttttttACTGCAGTATCAAGTGCTGCTGCTTCTAACTACAACTACTTCAACTGCGCCTTTTTTAAATGCCGCAT GGATCGTGAGATATTGTTATGATATGGGATGGGCGGTTTCTTTTTTAATATTACCTTAGTGTTAAGAGTGAACTGGTCTTCGTCCCTCTGTTTCCCCCTTTTGACCGTACGATACGCGCTGTTGTTTGTTGTCGTTCAGTAGCAGTAGCCCCTCTCACATGCGCAGAGCGGTACGCAAAGAAAACGGCGCGCCAAACAGGACAGACGATTAATCCTCGCTGCTGATAATAGAAAGTAAGGCTGACGTTACGGACACAGTGAGAAGCTTCTCGAGCATTATCGTACTGTTGATTGCGCGTTTTTATTTAACTCATTCGCCAACACAGCCCTCCCGTAGGCGTAGCTTGATCGCGTGAAATGATCGCACTGTCGGTAGAAGCAGTAGTTAGATTGAAAGGAAGGAGGGAAGGAAGGGGCACGAAACAGATGCACAAAAGTAACTCGTTTGATTTTGGTTTTAAAATTAATACTAAGCAGATCACTCTACTACTGTACGTACAAGTAAACCCTGACGGCGCCCCGCGACACACGCGATTCGCGATTTTTCCACCCTGGTTTCGCAAGCCGAGAGGAAGTTTCTTTTTGTATACAAATATCCCCTTCTTGTTTATATAGTACTGAAGGAGTAGGAAAGATTCAGTGAAGGAGAGGAAGAGAGAGAGAGAGAGGGAGTTTAATGGAGAAATATATACCAATTTAAG]
[-] EMBL CNS08VIT             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ttACATACTATTAATCCTCGCTGCTGATAATAGAAAGTAAGGCTGACGTTACGGACACAGTGAGAAGCTTCTCGAGCATTATCGTACTGTTGATTGCGCGTTTTTATTTAACTCATTCGCCAAAACAGCCCTCCCGTAGGCGTAGCTTGATCGCGTGAAATGATCGCACTGTCGGTAGAAGCAGTAGTTAGATTGAAAGGAAGGAGGGAAGGAAGGGGCACGAAACAGATGCACAAAAGTAACTCGTTTGATTTTGGTTTTAAAATTAATACTAAGCAGATCACTCTACTACTGTACGTACAAGTAAACCCTGACGGCGCCCCGCGAAACACGCGATTCGCGATTTTTCCACCCTGGTTTCGCAAGCCGAGAGGAAGTTTCTTTTTGTATACAAATATCCCCTTCTTGTTTATATAGTACTGAAGGAGTAGGAAAGATTCAGTGAAGGAGAGGAAGAGAGAGAGAGAGAGGGAGTTTAATGGAGAAATAT             ]


>consensus_8815#0 CCGCCCACGCGTCCGCACACAGGGAAAAAAGAAACCTCCGCTTCTGAAATCGTTTATTTT CAGCCTATTTCTCATCGGCAGCAGCTTCCAGAGTAAGAGGTCCACACCGTCGTCGTCGTC CACACCACGCAAGAGAACGGTCGTGAAAATCTCAACCGCGCAAGATCACGAACAAGTTCA CACGATCACGAACACAGGACGAGGGCCAGTGTGAAACGACTCTCACGACACACAGAGCAA AAGTGTATAAGCGTCACTGCTCGCGGTCGAAATCAGTCAGTTTTTCACACGCATCCGGAA CGCCGTATCGTGCGAGACGGATCCATTTGCCATTCGTTTTGATTTGTGGCCGCCGTGCGG AAGAATTTGCCGGTTTTGCATCTTGCAAGTGGAAGATTGTGCCGAAAAGCAGTTAAAGTA AACCGTCCCGCAGCGCTCTTTTATCGCATTTTCCAATCGCAAATTACATCATTGGTGCCA GCAGCAGAATGGACGATTCCATTGATGAGGAGGTGATCTCGGGCGGCTCAACGATCACCG TCGAGTTCAGTGGTGGAGCGGAAACTCTTTTCGGTGGTGTGAAGGAACACATCGTACCGT TGGATGGATCGAAAATAGTATTGCTCGAGGAAATGCTCCGATGGCTAAGGGATCATCTGC TCACGGGTGATGCTGGTCTGTTCCTCCAGGAAAACACCGTCCGCCCCGGCATTCTGGTCA TGATCAACGATACCGACTGGGATCTGATGGGCGAAACGGAGTACATCCTGCAGCCTGGCG ATCATATCCTCTTCATTTCCACCCTCCATGGCGGATAAGCACCATGGTCGGGAAACGATA CCTGTGATATACACTACTTCTACTACTACTACTACCACACTGCAGTATCAAGTGCTGCTG CTTCTAACTACAACTACTTCAACTGCGCCCGATCTAAATGCCGCATGGATCGTGAGATAT TGTTATGATATGGGATGGGCGGTTTCTTTTTTAATATTACCTTAGTGTTAAGAGTGAACT GGTCTTCGTCCCTCTGTTTCCCCCTTTTGACCGTACGATACGCGCTGTTGTTTGTTGTCG TTCAGTAGCAGTAGCCCCTCTCACATGCGCAGAGCGGTACGCAAAGAAAACGGCGCGCCA AACAGGACAGACGATTAATCCTCGCTGCTGATAATAGAAAGTAAGGCTGACGTTACGGAC ACAGTGAGAAGCTTCTCGAGCATTATCGTACTGTTGATTGCGCGTTTTTATTTAACTCAT TCGCCAACACAGCCCTCCCGTAGGCGTAGCTTGATCGCGTGAAATGATCGCACTGTCGGT AGAAGCAGTAGTTAGATTGAAAGGAAGGAGGGAAGGAAGGGGCACGAAACAGATGCACAA AAGTAACTCGTTTGATTTTGGTTTTAAAATTAATACTAAGCAGATCACTCTACTACTGTA CGTACAAGTAAACCCTGACGGCGCCCCGCGACACACGCGATTCGCGATTTTTCCACCCTG GTTTCGCAAGCCGAGAGGAAGTTTCTTTTTGTATACAAATATCCCCTTCTTGTTTATATA GTACTGAAGGAGTAGGAAAGATTCAGTGAAGGAGAGGAAGAGAGAGAGAGAGAGGGAGTT TAATGGAGAAATATATACCAATTTAAG



consensusID : consensus_8815#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 803
fasta sequence
                              [CAGAATTGCCCCGAGGTTGTTCTGAAATCGTTTATTTTCAGCCTATTTCTCATTGGCAGCAGCTTCCAGAGTAAGAGGTCCACACCGTCGTCGTCGTCCACACCACGCAAGAGAACGGTCGTGAAAATCTCAACCGCGCAAGATCACGAACACAGTTCACACGATCACGAACACAGGACGAGGGCCAGTGTGAAACGACTCTCACGACACACAGAGCAAAAGTGTATAAGCGTCAGCTGCTCGCGGTCGAAATCAGTCAGTTTTTCACGCATCCGGAACGGCCGTATCGTGCGAGACGGACTCCATTTGCCATTCGTCTCTCGATCTTGCTGGCCGCCGCTGCGGCAAGCAACTTTGCCGGTTTTGCACTCTTGCAAGCTGGAACGCATTGCTGCCGAACACATGCAGCTTAACACGCTACACACCCGCTCCCGCAGNCCGCTCTTTACTCTACTTTGCAATTATTACCAATCGCCACAAACTTAACACTCACTNTGCGCTGGCCAGCCCACGGCACGAAACTGTGACGCACTCTCCCACTTGCACTGCACGCGCACAGCGTGGATCCTCCGCGCGCCCGCGCCTCCACACCCGAGCNTCCANCCCGGNTCCGCACGCTTCTCCACGCTTGCGCTGGGGCACGCCCCGCGGCCACACAACCCCTTCGTCTCTCTCCGGCCTGTNGGCTTGGCTGNCACGCGGAGNACACCCAACCTCCGGCTCACCCCGGCTNGGGCACTGCGCACTTCCGGCACNCCCACCTCACGGCTACTTCGGCGCCTCCGGAGNNGCACTACCCTGCC]

[+] EMBL AL930454             [CAGAATTGCCCCGAGGTTGTTCTGAAATCGTTTATTTTCAGCCTATTTCTCATTGGCAGCAGCTTCCAGAGTAAGAGGTCCACACCGTCGTCGTCGTCCACACCACGCAAGAGAACGGTCGTGAAAATCTCAACCGCGCAAGATCACGAACACAGTTCACACGATCACGAACACAGGACGAGGGCCAGTGTGAAACGACTCTCACGACACACAGAGCAAAAGTGTATAAGCGTCAGCTGCTCGCGGTCGAAATCAGTCAGTTTTTCACGCATCCGGAACGGCCGTATCGTGCGAGACGGACTCCATTTGCCATTCGTCTCTCGATCTTGCTGGCCGCCGCTGCGGCAAGCAACTTTGCCGGTTTTGCACTCTTGCAAGCTGGAACGCATTGCTGCCGAACACATGCAGCTTAACACGCTACACACCCGCTCCCGCAGNCCGCTCTTTACTCTACTTTGCAATTATTACCAATCGCCACAAACTTAACACTCACTNTGCGCTGGCCAGCCCACGGCACGAAACTGTGACGCACTCTCCCACTTGCACTGCACGCGCACAGCGTGGATCCTCCGCGCGCCCGCGCCTCCACACCCGAGCNTCCANCCCGGNTCCGCACGCTTCTCCACGCTTGCGCTGGGGCACGCCCCGCGGCCACACAACCCCTTCGTCTCTCTCCGGCCTGTNGGCTTGGCTGNCACGCGGAGNACACCCAACCTCCGGCTCACCCCGGCTNGGGCACTGCGCACTTCCGGCACNCCCACCTCACGGCTACTTCGGCGCCTCCGGAGNNGCACTACCCTGCC]


>consensus_8815#1 CAGAATTGCCCCGAGGTTGTTCTGAAATCGTTTATTTTCAGCCTATTTCTCATTGGCAGC AGCTTCCAGAGTAAGAGGTCCACACCGTCGTCGTCGTCCACACCACGCAAGAGAACGGTC GTGAAAATCTCAACCGCGCAAGATCACGAACACAGTTCACACGATCACGAACACAGGACG AGGGCCAGTGTGAAACGACTCTCACGACACACAGAGCAAAAGTGTATAAGCGTCAGCTGC TCGCGGTCGAAATCAGTCAGTTTTTCACGCATCCGGAACGGCCGTATCGTGCGAGACGGA CTCCATTTGCCATTCGTCTCTCGATCTTGCTGGCCGCCGCTGCGGCAAGCAACTTTGCCG GTTTTGCACTCTTGCAAGCTGGAACGCATTGCTGCCGAACACATGCAGCTTAACACGCTA CACACCCGCTCCCGCAGNCCGCTCTTTACTCTACTTTGCAATTATTACCAATCGCCACAA ACTTAACACTCACTNTGCGCTGGCCAGCCCACGGCACGAAACTGTGACGCACTCTCCCAC TTGCACTGCACGCGCACAGCGTGGATCCTCCGCGCGCCCGCGCCTCCACACCCGAGCNTC CANCCCGGNTCCGCACGCTTCTCCACGCTTGCGCTGGGGCACGCCCCGCGGCCACACAAC CCCTTCGTCTCTCTCCGGCCTGTNGGCTTGGCTGNCACGCGGAGNACACCCAACCTCCGG CTCACCCCGGCTNGGGCACTGCGCACTTCCGGCACNCCCACCTCACGGCTACTTCGGCGC CTCCGGAGNNGCACTACCCTGCC



consensusID : consensus_8815#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence
                              [ATAAGATTAAAGTAATACTAAGCACCATGGTCGGGAAACGATACCTGTGATATACACTACTTCTACTACTACTACTACCACACTGCAGTATCAAGTGCTGCTGCTTCTAACTACAACTACTTCAACTGCGCCCGATCTAAATGCCGCATGGATCGTGAGATATTGTTATGATATGGGATGGGCGGTTTCTTTTTTAATATTACCTTAGTGTTAAGAGTGAACTGTTCTTCGTCCCTCTGTTTCTTACCACCACTCCCCTTTTGACCGTACGATACGCGGTGTTGTTTGTTGTCGTTCAGCAGCAGTAACCCCTCTCACAGAGCGGTACGCAAAGAAAACGGCGCGCCAAACAGGACAGACGATTAATCCTCGCTGCTGATAATAGAAAGTAAGGCTGACGTCACGGACACAGTGAGAAGCTTCTCGAGCATTATCGTACTGTTGATTGCGCGTTTTTATTTAACTCATTCGCCAACACAGCCCTCCCGTAGGCGTAGCTTGATCGCGTGAAATGATCGCACTGT]

[+] EMBL BX611352             [ATAAGATTAAAGTAATACTAAGCACCATGGTCGGGAAACGATACCTGTGATATACACTACTTCTACTACTACTACTACCACACTGCAGTATCAAGTGCTGCTGCTTCTAACTACAACTACTTCAACTGCGCCCGATCTAAATGCCGCATGGATCGTGAGATATTGTTATGATATGGGATGGGCGGTTTCTTTTTTAATATTACCTTAGTGTTAAGAGTGAACTGTTCTTCGTCCCTCTGTTTCTTACCACCACTCCCCTTTTGACCGTACGATACGCGGTGTTGTTTGTTGTCGTTCAGCAGCAGTAACCCCTCTCACAGAGCGGTACGCAAAGAAAACGGCGCGCCAAACAGGACAGACGATTAATCCTCGCTGCTGATAATAGAAAGTAAGGCTGACGTCACGGACACAGTGAGAAGCTTCTCGAGCATTATCGTACTGTTGATTGCGCGTTTTTATTTAACTCATTCGCCAACACAGCCCTCCCGTAGGCGTAGCTTGATCGCGTGAAATGATCGCACTGT]


>consensus_8815#2 ATAAGATTAAAGTAATACTAAGCACCATGGTCGGGAAACGATACCTGTGATATACACTAC TTCTACTACTACTACTACCACACTGCAGTATCAAGTGCTGCTGCTTCTAACTACAACTAC TTCAACTGCGCCCGATCTAAATGCCGCATGGATCGTGAGATATTGTTATGATATGGGATG GGCGGTTTCTTTTTTAATATTACCTTAGTGTTAAGAGTGAACTGTTCTTCGTCCCTCTGT TTCTTACCACCACTCCCCTTTTGACCGTACGATACGCGGTGTTGTTTGTTGTCGTTCAGC AGCAGTAACCCCTCTCACAGAGCGGTACGCAAAGAAAACGGCGCGCCAAACAGGACAGAC GATTAATCCTCGCTGCTGATAATAGAAAGTAAGGCTGACGTCACGGACACAGTGAGAAGC TTCTCGAGCATTATCGTACTGTTGATTGCGCGTTTTTATTTAACTCATTCGCCAACACAG CCCTCCCGTAGGCGTAGCTTGATCGCGTGAAATGATCGCACTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8815#0      CCGCCCACGCGTCCGCACACAGGGAAAAAAGAAACCTCCGCTTCTGAAATCGTTTATTTT 60
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      CAGCCTATTTCTCATCGGCAGCAGCTTCCAGAGTAAGAGGTCCACACCGTCGTCGTCGTC 120
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      CACACCACGCAAGAGAACGGTCGTGAAAATCTCAACCGCGCAAGATCACGAACAAGTTCA 180
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      CACGATCACGAACACAGGACGAGGGCCAGTGTGAAACGACTCTCACGACACACAGAGCAA 240
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      AAGTGTATAAGCGTCACTGCTCGCGGTCGAAATCAGTCAGTTTTTCACACGCATCCGGAA 300
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      CGCCGTATCGTGCGAGACGGATCCATTTGCCATTCGTTTTGATTTGTGGCCGCCGTGCGG 360
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      AAGAATTTGCCGGTTTTGCATCTTGCAAGTGGAAGATTGTGCCGAAAAGCAGTTAAAGTA 420
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      AACCGTCCCGCAGCGCTCTTTTATCGCATTTTCCAATCGCAAATTACATCATTGGTGCCA 480
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      GCAGCAGAATGGACGATTCCATTGATGAGGAGGTGATCTCGGGCGGCTCAACGATCACCG 540
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      TCGAGTTCAGTGGTGGAGCGGAAACTCTTTTCGGTGGTGTGAAGGAACACATCGTACCGT 600
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      TGGATGGATCGAAAATAGTATTGCTCGAGGAAATGCTCCGATGGCTAAGGGATCATCTGC 660
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      -----CAGAATTGCCCCGAGGTTGTTCTGAAATCGTTTATTTTCAGCCTATTTCTCATTG 55
                                                                                  

consensus_8815#0      TCACGGGTGATGCTGGTCTGTTCCTCCAGGAAAACACCGTCCGCCCCGGCATTCTGGTCA 720
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      GCAGCAGCTTCCAGAGTAAGAGGTCCACACCGTCGTCGTCGTCCACACCACGCAAGAGAA 115
                                                                                  

consensus_8815#0      TGATCAACGATACCGACTGGGATCTGATGGGCGAAACGGAGTACATCCTGCAGCCTGGCG 780
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      CGGTCGTGAAAATCTCAACCGCGCAAGATCACGAACACAGTTCACACGATCACGAACACA 175
                                                                                  

consensus_8815#0      ATCATATCCTCTTCATTTCCACCCTCCATGGCGGATAAGCACCATGGTCGGGAAACGATA 840
consensus_8815#2      -----------------ATAAGATTAAAGTAATACTAAGCACCATGGTCGGGAAACGATA 43
consensus_8815#1      GGACGAGGGCCAGTGTGAAACGACTCTCACGACACACAGAGCAAAAGTGTATAAGCGTCA 235
                                              *            **  * *  **    ** **  *

consensus_8815#0      CCTGT----GATATACACTACTTCTACTACTACTACTACCACACTGCAGTATCAAGTGCT 896
consensus_8815#2      CCTGT----GATATACACTACTTCTACTACTACTACTACCACACTGCAGTATCAAGTGCT 99
consensus_8815#1      GCTGCTCGCGGTCGAAATCAGTCAGTTTTTCACGCATCCGGAACGGCCGTATCGTGCGAG 295
                       ***     * *  * *  * *     *   **   * *   ** ** *****  * *  

consensus_8815#0      GCTGCTTCTAACTACAACTACT---TCAACTGCGCCCGATCTAAATGCCGCATGGATCGT 953
consensus_8815#2      GCTGCTTCTAACTACAACTACT---TCAACTGCGCCCGATCTAAATGCCGCATGGATCGT 156
consensus_8815#1      ACGGACTCCATTTGCCATTCGTCTCTCGATCTTGCTGGCCGCCGCTGCGGCAAGCAACTT 355
                       * *  ** *  * * * *  *   ** *    **  *       *** *** * * * *

consensus_8815#0      GA--GATATTGTTATGATATGGGATGGG-CGGTTTCTTTTTTAATAT---TACCTTAGT- 1006
consensus_8815#2      GA--GATATTGTTATGATATGGGATGGG-CGGTTTCTTTTTTAATAT---TACCTTAGT- 209
consensus_8815#1      TGCCGGTTTTGCACTCTTGCAAGCTGGAACGCATTGCTGCCGAACACATGCAGCTTAACA 415
                          * * ***   *  *    * ***  **  **  *    ** *     * ****   

consensus_8815#0      -GTTAAGA----------GTGAACTGGTCTTCGTCCCTCTGT----TTC----------- 1040
consensus_8815#2      -GTTAAGA----------GTGAACTGTTCTTCGTCCCTCTGT----TTCTTACCACCACT 254
consensus_8815#1      CGCTACACACCCGCTCCCGCAGNCCGCTCTTTACTCTACTTTGCAATTATTACCAATCGC 475
                       * **             *    * * ****    *  ** *    **            

consensus_8815#0      CCCCTTTTGACCGTACGATACGCGCTGTTGTTTGTTGTCGTTCAGTAGCAGTAGCCC-CT 1099
consensus_8815#2      CCCCTTTTGACCGTACGATACGCGGTGTTGTTTGTTGTCGTTCAGCAGCAGTAACCC-CT 313
consensus_8815#1      CACAAACTTAACACTCACTNTGCGCTG--GCCAGCCCACGGCACGAAACTGTGACGCACT 533
                      * *    * * *   *  *  *** **  *   *    **    * * * **  * * **

consensus_8815#0      CTCACATGCGCAGAGCGGTACGCAAAGAAAACGGCGCGCCAAACAGGACAGACGATTA-A 1158
consensus_8815#2      CTCACA------GAGCGGTACGCAAAGAAAACGGCGCGCCAAACAGGACAGACGATTA-A 366
consensus_8815#1      CTCCCACTT---GCACTGCACGCGCACAGCGTGGATCCTCCGCGCGCCCGCGCCTCCACA 590
                      *** **      *  * * ****  * *    **  *  *     *  *   *    * *

consensus_8815#0      TCCTCGCTGCTGATAATAGAAAGTAAGGCTGACGTTACGGACACAGTGAGAAGCTTCTCG 1218
consensus_8815#2      TCCTCGCTGCTGATAATAGAAAGTAAGGCTGACGTCACGGACACAGTGAGAAGCTTCTCG 426
consensus_8815#1      CCCGAGCNTCCANCCCGGNTCCGCACGCTTCTCCACGCTTGCGCTGGGGCACGCCCCGCG 650
                       **  **  *            * * *  *  *    *   * * * *  * **  * **

consensus_8815#0      A--GCATTATCGTACTGTTGATTGC--GCGTTTTTATTTAACTCATTCGCCAACACAGCC 1274
consensus_8815#2      A--GCATTATCGTACTGTTGATTGC--GCGTTTTTATTTAACTCATTCGCCAACACAGCC 482
consensus_8815#1      GCCACACAACCCCTTCGTCTCTCTCCGGCCTGTNGGCTTGGCTGNCACGCGGAGNACACC 710
                          **  * *     **   *  *  ** * *    **  **    ***  *     **

consensus_8815#0      CTCCCGTAGGCGTA-----GCTTGATCGC-GTGAAATGATCGCACTGTCGGTAGAAGCAG 1328
consensus_8815#2      CTCCCGTAGGCGTA-----GCTTGATCGC-GTGAAATGATCGCACTGT------------ 524
consensus_8815#1      CAACCTCCGGCTCACCCCGGCTNGGGCACTGCGCACTTCCGGCACNCCCACCTCACGGCT 770
                      *  **   ***  *     *** *  * * * * * *    ****               

consensus_8815#0      TAGTTAGATTGAAAGGAAGGAGGGAAGGAAGGGGCACGAAACAGATGCACAAAAGTAACT 1388
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ACTTCGGCGCCTCCGGAGNNGCACTACCCTGCC--------------------------- 803
                                                                                  

consensus_8815#0      CGTTTGATTTTGGTTTTAAAATTAATACTAAGCAGATCACTCTACTACTGTACGTACAAG 1448
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      TAAACCCTGACGGCGCCCCGCGACACACGCGATTCGCGATTTTTCCACCCTGGTTTCGCA 1508
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      AGCCGAGAGGAAGTTTCTTTTTGTATACAAATATCCCCTTCTTGTTTATATAGTACTGAA 1568
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      GGAGTAGGAAAGATTCAGTGAAGGAGAGGAAGAGAGAGAGAGAGAGGGAGTTTAATGGAG 1628
consensus_8815#2      ------------------------------------------------------------
consensus_8815#1      ------------------------------------------------------------
                                                                                  

consensus_8815#0      AAATATATACCAATTTAAG 1647
consensus_8815#2      -------------------
consensus_8815#1      -------------------
                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)