These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 940 fasta sequence [CGCCCGAGGTTT-GTTTACTTCCGGGAGTCGCGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGA-CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT-CCCCGCTG-TG-GA-GAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGGCTCAGGATGATTTGCACGTAGTGAAAAATTTGGAAA-TTCCAACGGACGACCCACAGTACCTGCAGGATTTGGTTGCAGCACGGCAGTGGGGGGCCTTCGGTGTTGTTCGTAGACGCGACC-GATGTTCTGTCCCGAAATATATCAATCAGTGCGGAGAACATTGACCACATCAACTTGATGCCGACGTACGGCTTGAACGTGTACTCGATGCTGAAACACAACACCGTCG-TCTTAACCGAAGATGCGGTTCGAAGCGTTGAGAGCAAATTGCTGGAGCACC-TGAATCGCAACGATGCGCGTGCACAAATGTGCAAATTTAAGTATGACAAATAAAGCTCCCAAACCAGTGCATAGCAATTAATAATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGGGGG] [+] EMBL AL931747 [CGCCCGAGGTTTAGTTTACTTCCGGGAGTCGCGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGCTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGA CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCACCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGAAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT CCCCGCTGCTG GACGGGGCGGTGGTATTGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACT ] [+] EMBL BM626090 [ ccGGTTT GTTTACTTCCGGGAGTCGCGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGA CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT CCCCGCTG TG GA GAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGGCTCAGGATGATTTGCACGTAGTG AAAATTTGGAAATTTCCAACGGACGACCCAC ] [+] EMBL BM592981 [ ccgGTCGCGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGA CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGAAAACCATGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT CCCCGCTG TG GA GGGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGACTCAGGATGATTTGCACGTAGTGAAAAATTTGGAAA TTCCAACGGACGACCCACAGTACCTGCAGGATTTGGTTGCAGCACGGCAGTGGGGGGCCTTCGGTGTTGTTTGTAGACGCGACC GATGTTATTTCCCGAAATATATCAATCAGTGCGGAGAACATT ] [+] EMBL CNS09DJR [ ATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGG GACCCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCGCACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT CCCCGCTG TGTTA GAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGT ] [+] EMBL BX608323 [ ACCCGGCCGTTGCCACCGCATCACAAGCCGAAGGGCGA CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAAGGGCAGAGGAAGTATCGATTCGTTAGCTTGGCACACACCAAAACTAGAAATGAAGTGCGTGTGGGCGGGAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTCCAATCAGAA CCCCGCTG TG GA GAGGCGGTGGTATCGCACACGGTCCAAGAACGCCGACCACACACTACTACATGCTGCCCTACTCCAATCGAGTCTGGGGACTAGTCTCCACGCTGTCGATAAAGCTGGCTCATGATGATACGCACGTAGTGAAAAATGAGGAAA TACCAACGGACGACCCAC ] [+] EMBL AGA282339 [ GCCACCGCAGCACAAGCCGAATGGCGA CCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGGAAACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGAT CCCCGCTG TG GA GAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGT ] [-] EMBL CNS09DJS [ CCACGGTTCAATCAGATCCCCCGCTG TG GA GAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGAACTAGTCTCCACGCTGTCGATAAAGCTGGCTCAGGATGATTTGCACGTAGTGAAAAATTTGGAAA TTCCAACGGACGACCCACAGTACCTGCAGGATTTGGTTGCAGCACGGCAGTGGGGG CTTCGGTGTTGTTCGTAGACGCGACC GATGTTCTGTCCCGAAATATATCAATCAGTGCGGAGAACATTGACCACATCAACTTGATGCCGACGTACGGCTTGAACGTGTACTCGATGCTGAAACACAACACCGTCGTTCTTAACCGAAGATGCGGTTCGAAGCGTTGAGAGCAAATTGCTGGAGCACCGTGAATCGCAACGATGCGCG ] [-] EMBL AGA280719 [ GCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGGCTCAGGATGATTTGCACGTAGTGAAAAATTTGGAAA TTCCAACGGACGACCCACAGTACCTGCAGGATTTGGTTGCAGCACGGCAGT GGGGGCCTTCGGTGTTGTTCGTAGACGCGACC GATGTTCTGTCCCGAAATATATCAATCAGTGCGGAGAACATTGACCACATCAACTTGATGCCGACGTACGGCTTGAACGTGTACTCGATGCTGAAACACAACACCGTCG TCTTAACCGAAGATGCGGTTCGAAGCGTTGAGAGCAAATTGCTGGAGCACC TGAATCGCAACGATGCGCGTGCACAAATGTGCAAATTTAAGTATGACAAATAAAGCTCCCAAACCAGTGCATAGCAATTAATAATCATAAAAAA ] [+] EMBL CNS08EEW [ AAGCTGGCTCAGGATGATTTGCACGTAGAAAAAAATTTGGAAA TTCCAACGGACGACCCACAGTACCTGCAGGATTTGGTTGCAGCACGGCAGTGGGGGGCCTTCGGTGTTGTTCGTAGACGCGACCGGATGTTCTGTCCCGAAATATATCAATCAGTGCGGAGAACATTGACCACATCAACTTGATGCCGACGTACGGCTTGAACGTGTACTCGATGCTGAAACACAACACCGTCG TCTTAACCGAAGATGCGGTTCGAAGCGTTGAGAGCAAATTGCTGGAGCACC TGAATCGCAACGATGCGCGTGCACAAATGTGCAAATTTAAGTATGACAAATAAAGCTCCCAAACCAGTGCATAGCAATTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGGGGG] consensusID : consensus_8828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence [CCGCGGACGCGTGGGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGACCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGAAAACCATGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGATCCCCGCTGTGGAGGGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGACTCAGGATGATTTGCACGTAGTGAAAATTTGGAAATTCCAACGGACGA] [+] EMBL BM601774 [CCGCGGACGCGTGGGTTACGAAACAAAGCATTCGGAATGTTAAAGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGACCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGAAAACCATGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGATCCCCGCTGTGGAGGGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCCCTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGACTCAGGATGATTTGCACGTAGTGAAAATTTGGAAATTCCAACGGACGA] [+] EMBL BM634935 [ TTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACCCGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGACCGTCCCGGGCAGTGTGGTTGGAAAACATGGACACGGTAGAACCGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATGAAGTGCGTGGTGGCGGGAGAAA ] consensusID : consensus_8828#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [GATCGCCAGGANTAACATCGGAATGTTAAGTTGGGGAATTGTTGAAATACCGGTCTTAATGGGTCGTTCGGTTCACTCTTACCGGCGTTGCANCGGAGCACAAGCCGAATGGCGACCGTCCCCGGGCAGTGTGGTTGGAAAACATTGACACGGGTAGAACCGGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATTGNAGTGCGTGGTGGGCGGGNAGGAAAAACCGGTTGGGCCTTCAAAAAGGGGTCCTTGGGGGAAAGGGGGCTTCCGGCCAACGGGTTCCNAATTCCAAGGAATTTCCCCGGCCTTTGT] [+] EMBL AL933635 [GATCGCCAGGANTAACATCGGAATGTTAAGTTGGGGAATTGTTGAAATACCGGTCTTAATGGGTCGTTCGGTTCACTCTTACCGGCGTTGCANCGGAGCACAAGCCGAATGGCGACCGTCCCCGGGCAGTGTGGTTGGAAAACATTGACACGGGTAGAACCGGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTATTCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATCGATTCGTTAGCTTTGCACACACCAAAACTAGAAATTGNAGTGCGTGGTGGGCGGGNAGGAAAAACCGGTTGGGCCTTCAAAAAGGGGTCCTTGGGGGAAAGGGGGCTTCCGGCCAACGGGTTCCNAATTCCAAGGAATTTCCCCGGCCTTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8828#0 CGCCCGAGGTTTGTTTACTTCCGGGAGTCGCGTTACGAAACAAAGCATTCGGAATGTTAA 60 consensus_8828#1 -----------------CCGCGGACGCGTGGGTTACGAAACAAAGCATTCGGAATGTTAA 43 consensus_8828#2 ------------------------------GATCGCCAGGANTAACAT-CGGAATGTTAA 29 * * * * *** *********** consensus_8828#0 AGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACC 120 consensus_8828#1 AGTTGGGGAATTTGTTGAAAATAACCGGTCTTAATGGGTTCGTTCGGTTCAACTCTTACC 103 consensus_8828#2 -GTTGGGGAATT-GTTGAAAT--ACCGGTCTTAATGGGT-CGTTCGGTTCA-CTCTTACC 83 *********** ******* **************** *********** ******** consensus_8828#0 CGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGACCGTCCC-GGGCAGTGTGGTTGGAA 179 consensus_8828#1 CGGCCGTTGCCACCGCAGCACAAGCCGAATGGCGACCGTCCC-GGGCAGTGTGGTTGGAA 162 consensus_8828#2 GG--CGTTGC-ANCGGAGCACAAGCCGAATGGCGACCGTCCCCGGGCAGTGTGGTTGGAA 140 * ****** * ** ************************** ***************** consensus_8828#0 AACATGGACACGG-TAGAACCGG-CTCATTCGGGAATCGTGGAACTGGACAATGCAGTAT 237 consensus_8828#1 AACATGGACACGG-TAGAACCGG-CTCATTCGGGAATCGTGGAACTGGACAATGCAGTAT 220 consensus_8828#2 AACATTGACACGGGTAGAACCGGGCTCATTCGGGAATCGTGGAACTGGACAATGCAGTAT 200 ***** ******* ********* ************************************ consensus_8828#0 TCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATC 297 consensus_8828#1 TCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATC 280 consensus_8828#2 TCGGTGCATCGCCGCGAATTGATATCGTGCATCAGAACATCGAATGGCAGAGGAAGTATC 260 ************************************************************ consensus_8828#0 GATTCGTTAGCTTTGCACACACCAAAACTAGAAAT-GAAGTGCGTGGTGG-CGGGAGGAA 355 consensus_8828#1 GATTCGTTAGCTTTGCACACACCAAAACTAGAAAT-GAAGTGCGTGGTGG-CGGGAGAAA 338 consensus_8828#2 GATTCGTTAGCTTTGCACACACCAAAACTAGAAATTGNAGTGCGTGGTGGGCGGGNAGGA 320 *********************************** * ************ **** * consensus_8828#0 ACCGTGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGATCCCCGCTGTG 415 consensus_8828#1 ACCATGGCCTCAAAAGGGTCTGGGAAGGGCTCGCCACGGTTCAATCAGATCCCCGCTGTG 398 consensus_8828#2 AAAACCGGTT---GGGCCTTCAAAAAGGGGTCCTTGGGGGAAAGGGGGCTTCCGGCC--A 375 * * * * * ***** ** ** * * * ** ** consensus_8828#0 GAGAGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCC 475 consensus_8828#1 GAGGGGCGGTGGTATCGCACACGGTCCAAGATCGCCGACCACACACTTCTACATGCTGCC 458 consensus_8828#2 ACGGGTTCCNAATTCCAAGGAATTTCCCCGGCCTTTGT---------------------- 413 * * * * * *** * * * consensus_8828#0 CTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGGCTCAGGATGA 535 consensus_8828#1 CTTCTTCAATCGAGTCTTGGGACTAGTCTCCACGCTGTCGATAAAGCTGACTCAGGATGA 518 consensus_8828#2 ------------------------------------------------------------ consensus_8828#0 TTTGCACGTAGTGAAAAATTTGGAAATTCCAACGGACGACCCACAGTACCTGCAGGATTT 595 consensus_8828#1 TTTGCACGTAGTGAAAA-TTTGGAAATTCCAACGGACGA--------------------- 556 consensus_8828#2 ------------------------------------------------------------ consensus_8828#0 GGTTGCAGCACGGCAGTGGGGGGCCTTCGGTGTTGTTCGTAGACGCGACCGATGTTCTGT 655 consensus_8828#1 ------------------------------------------------------------ consensus_8828#2 ------------------------------------------------------------ consensus_8828#0 CCCGAAATATATCAATCAGTGCGGAGAACATTGACCACATCAACTTGATGCCGACGTACG 715 consensus_8828#1 ------------------------------------------------------------ consensus_8828#2 ------------------------------------------------------------ consensus_8828#0 GCTTGAACGTGTACTCGATGCTGAAACACAACACCGTCGTCTTAACCGAAGATGCGGTTC 775 consensus_8828#1 ------------------------------------------------------------ consensus_8828#2 ------------------------------------------------------------ consensus_8828#0 GAAGCGTTGAGAGCAAATTGCTGGAGCACCTGAATCGCAACGATGCGCGTGCACAAATGT 835 consensus_8828#1 ------------------------------------------------------------ consensus_8828#2 ------------------------------------------------------------ consensus_8828#0 GCAAATTTAAGTATGACAAATAAAGCTCCCAAACCAGTGCATAGCAATTAATAATCATAA 895 consensus_8828#1 ------------------------------------------------------------ consensus_8828#2 ------------------------------------------------------------ consensus_8828#0 AAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGGGGG 940 consensus_8828#1 --------------------------------------------- consensus_8828#2 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||