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Anopheles gambiae
cluster # 8883 cluster # 8883       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8883#0 length = 1127 sequences # 10  
consensus_8883#1 length = 543 sequences # 1  
consensus_8883#2 length = 414 sequences # 1  

consensusID : consensus_8883#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1127
fasta sequence
                              [CCGAAAAGAAAACACAACACACTCGGGCACAGTTAGCGGTAGTTTTTAGCTATGTTCATGTAAATTCTTCATTTAAGTACAGCTCTCGCACACAAAACAGCCATG-T-CGTCGCCGGAAACAACGTTAGAGCTGTACGACGATGGAGCGGAATCGCCTTCCGAGCTGATGAGCGGAGAAATGACCGTTACGAGTGCGCCGCGCAACACGACCGATCCCAGCTCGCCCGACTTCAACACACTGGACGAACCGATCCGGGACACAATCATGCGTGACGTAAAGGCGGTCGGTGTCAAATTCTACCACGTCCTCATACCGCGGGAAAAGAACACCCTGCTGAGGGACTGGGACCTGTGGGGGCCGCTGGTGCTGTGCACGTTTATGGCCACCATCCTACACGGCTCGTCC-GATGAGATGCACGACGGCGGGCCCGAGTTCGCGCAGGTTTTTGTGATCGTCTGGATCGGTGCCATGATTGTGACGCTCAACTCCAAGCTGCTCGGTGGGAAAATCTCCTTTTTCCAATCAATCTGCGTACTTGGCTACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGT-GGGGTTCGGTTGGGCAACTTATGCTTCGATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAGCTCTTGCCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTGGTCGTTTCGCACAGCAATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGTTACAACCGAGTCGGACCTGACTGGAACGTGGGGACGGGTGCACGGACACGCACGGGGTAGCACGCCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTACGGCACAGGACACAGGCGGGTTGTTGCTGCATCGGC-GGGGGTAAAACAGCACGATCCCACTTAGACTAATCGCTACTGTACTAAATGCCTAGGTATATCAGCTTTTGTATTATACAACTTTCCAACAGATTAGTGTAATAAAGTGATGAATTCCCGCACTCGCGGATTCATTAA]

[+] EMBL BM600375             [CCGAAAAGAAAACACAACACACTCGGGCACAGTTAGCGGTAGTTTTTAGCTATGTTCATGTAAATTCTTCATTTAAGTACAGCTCTCGCACACAAAACAGCCATG T CGTCGCCGGAAACAACGTTAGAGCTGTACGACGATGGAGCGGAATCGCCTTCCGAGCTGATGAGCGGAGAAATGACCGTTACGAGTGCGCCGCGCAACACGACCGATCCCAGCTCGCCCGACTTCAACACACTGGACGAACCGATCCGGGACACAATCATGCGTGACGTAAAGGCGGTCGGTGTCAAATTCTACCACGTCCTCATACCGCGGGAAAAGAACACCCTGCTGAGGGACTGGGACCTGTGGGGGCCGCTGGTGCTGTGCACGTTTATGGCCACCATCCTACACGGCTCGTCC GATGAGATGCACGACGGCGGGCCCGAGTTCGCGCAGGTTTTTGTGATCGTCTGGATCGGTGCCATGATTGTGACGCTCAACTCCAAGCTGCTCGGTGGGAAAATCTCCTTTTTCCAATCAATCTGCGTACTTGGCTACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGTGGGGGTTCGGTTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM576082             [           ccgCAACACACTCGGGCACAGTTAGCGGTAGTTTTTAGCTATGTTCATGTAAATTCTTCATTTAAGTACAGCTCTCGCACACAAAACAGCCATG T CGTCGCCGGAAACAACGTTAGAGCTGTACGACGATGGAGCGGAATCGCCTTCCGAGCTGATGAGCGGAGAAATGACCGTTACGAGTGCGCCGCGCAACACGACCGATCCCAGCTCGCCCGACTTCAACACACTGGACGAACCGATCCGGGACACAATCATGCGTGACGTAAAGGCGGTCGGTGTCAAATTCTACCACGTCCTCATACCGCGGGAAAAGAACACCCTGCTGAGGGACTGGGACCTGTGGGGGCCGCTGGTGCTGTGCACGTTTATGGCCACCATCCTACACGGCTCGTCC GATGAGATGCACGACGGCGGGCCCGAGTTCGCGCAGGTTTTTGTGATCGTCTGGATCGGTGCCATGATTGTGACGCTCAACTCCAAGCTGCTCGGTGGGAAAATCTCCTTTTTCCAATCAATCTGCGTACTTGGCTACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGT GGGGTTCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CNS09BQG             [               AACACACTCGGGCACAGTTAGCGGTAGTTTTTAGCTATGTTCATGTAAATTCTTCATTTAAGTACAGCTCTCGCACACAAAACAGCCATG T CGTCGCCGGAAACAACGTTAGAGCTGTACGACGATGGAGCGGAATCGCCTTCCGAGCTGATGAGCGGAGAAATGACCGTTACGAGTGCGCCGCGCAACACGACCGATCCCAGCTCGCCCGACTTCAACACACTGGACGAACCGATCCGGGACACAATCATGCGTGACGTAAAGGCGGTCGGTGTCAAATTCTACCACGTCCTCATACCGCGGGAAAAGAACACCCTGCTGAGGGACTGGGACCTGTGGGGGCCGCTGGTGCTGTGCACGTTTATGGCCACCATCCTACACGGCTCGTCC GATGAGATGCACGACGGCGGGCCCGAGTTCGCGCAGGTTTTTGTGATCGTCTGGATCGGTGCCATGATTGTGACGCTCAACTCCAAGCTGCTCGGTGGGAAAATCTCCTTTTTCCAATCAATCTGCGTACTTGGCTACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGT GGGGTTCGGTTGGGCAACTTATGCTTCGATAATATTCCTCGGCGACAGTTAACCACCGAACCGGAAAGCTCTTGCCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTGGTCGTTTCGCACAGCAATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTC                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CNS096HJ             [                  ACACTCGGGCACGGTTTGCGGTAGTTTTTCCCTATTTTCATGTAAATTCTTCATTTAAGTACAGCTCTCCCACACAAAAAAGCCATG T CGTCGACGGAAACAACGTTAGAGCTGTACGACGATGGAGCGGAATCGCCCACCGAGCTGATGAGCGGAGAAATGACCGTTACGAGTGCGCCGCGCAACACGACCGATCCCAGCTCGCCCGACTTCAACACACTGGACGAACCGATCCGGGACACAATCATGCGTGACGTAAAGGCGGTCGGTGTCAAATTCTACCACGTCCTCATACCGCGGGAAAAAAACACTCTGCTGAGGGACTGGGACCTCTGGGGGCCGCTGGTGCTGTGCACGTTTATGGCCACCATCCTTCACGGCTCGTCC GACGAGATGCACGACGGTGGGCCCGAGTTCGCGCAGGTTTTTGTTATCGTCTGGATCGGTGCCATGATTGTGACGCTCAACTCCAAGCTGCTCGGTGGGAAAATCTCCTTTTTCCAATCAATCTGCGTACTTGGCTACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTGTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CNS096JN             [                caactaTCGGGCACAGTTAGCGGTAGTTTTTAGCTATGTTCATGTAAATTCTTCATTTAAGTACAGCTCTCGCACACAAAACAGCCATG T CGTCGCCGGAAACAACGTTAGAGCTGTACGACGATGGAGCGGAATCGCCTTCCGAGCTGATGAGCGGAGAAATGACCGTTACGAGTGCGCCGCGCAACACGACCGATCCCAGCTCGCCCGACTTCAACACACTGGACGAACCGATCCGGGACACAATCATGCGTGACGTAAAGGCGGTCGGTGTCAAATTCTACCACGTCCTCATACCGCGGGAAAAGAACACCCTGCTGAGGGACTGGGACCTGTGGGGGCCGCTGGTGCTGTGCACGTTTATGGCCACCATCCTACACGGCTCGTCCGGATGAGATGCACGACGGCGGGCCCGAGTTCGCGCAGGTTTTTGTGATCGTCTGGATCGGTGCCATGATTGTGACGCTCAACTCCAAGCTGCTCGGTGGGAAAATCTCCTTTTTCCAATCAATCTGCGTACTTGGCTACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGT GGGGTTCGGTTGGGCAACTTATGCTTCGATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAGCTCTTGCCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTGGTCGTTTCGCACAGCAATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGTTACAACCGAGTCGGACCTGACTGGAACGTGGGGACGGGTGCACGGACACGCACGGGGTAGCACGCCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTACGGCACAGGACACAGGCGGGTTGTTGCTGCATCGGCGGGGGGTAAAACAGCACG                                                                                                                         ]
[+] EMBL BM622359             [                                                  ccgGTTCATGTAAATTCTTCATTTAAGTACAGCTCTCGCACACAAAACAGCCATG T CGTCGCCGGAAACAACGTTAGAGCTGTACGACGATGGAGCGGAATCGCCTTCCGAGCTGATGAGCGGAGAAATGACCGTTACGAGTGCGCCGCGCAACACGACCGATCCCAGCTCGCCCGACTTCAACACACTGGACGAACCGATCCGGGACACAATCATGCGTGACGTAAAGGCGGTCGGTGTCAAATTCTACCACGTCCTCATACCGCGGGAAAAGAACACCCTGCTGAGGGACTGGGACCTGTGGGGGCCGCTGGTGCTGTGCACGTTTATGGCCACCATCCTACACGGCTCGTCC GATGAGATGCACGACGGCGGGCCCGAGTTCGCGCAGGTTTTTGTGATCGTCTGGATCGGTGCCATGATTGTGACGCTCAACTCCAAGCTGCTCGGTGGGAAAATCTCCTTTTTCCAATCAATCTGCGTACTTGGCTACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGT GGGGTTCGGTTGGGCAACTTATGCTTCGATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CNS09592             [                                                                                   TCTCGCACACAAAACAGCCATGATACGTCGCCGGAAACAACGTTAGAGCTGTACGACGATGGAGCGGAATCGCCTTCCGAGCTGATGAGCGGAGAAATGACCGTTACGAGTGCGCCGCGCAACACGACCGATCCCAGCTCGCCCGACTTCAACACACTGGACGAACCGATCCGGGACACAATCATGCGTGACGTAAAGGCGGTCGGTGTCAAATTCTACCACGTCCTCATACCGCGGGAAAAGAACACCCTGCTGAGGGACTGGGACCTGTGGGGGCCGCTGGTGCTGTGCACGTTTATGGCCACCATCCTACACGGCTCGTCC GATGAGATGCACGACGGCGGGCCCGAGTTCGCGCAGGTTTTTGTGATCATCTGGATCGGTGCCATGATTGTCACGCTCAACTCCAAGCTGCTCGGTGGGAAAATCTCCTTTTTCCAATCAATCTGCGTACTTGGCTACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGT GGGGTTCGGTTGGGCAACTTATGCTTCGATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAGCTCTTGCCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTGGTCGTTTCGCACAGCAATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGTTACAACCGAGTCGGACCTGACTGGAACGTGGGGACGGGTGCACGGACACGCACGGGGTAGC                                                                                                                                                                                                                                     ]
[-] EMBL CNS096JO             [                                                                                                                                                  ggGGAATCGCCTTCCGTGCTGATGAGCGGAGAAATGACCGTTACGAGTGCGCCGCGCAACACGACCGATCCCAGCTCGCCCGACTTCAACACACTGGACGAACCGATCCGGGACACAATCATGCGTGACGTAAAGGCGGTCGGTGTCAAATTCTACCACGTCCTCATACCGCGGGAAAAGAACACCCTGCTGAGGGACTGGGACCTGTGGGGGCCGCTGGTGCTGTGCACGTTTATGGCCACCATCCTACACGGCTCGTCC GATGAGATGCACGACGGCGGGCCCGAGTTCGCGCAGGTTTTTGTGATCGTCTGGATCGGTGCCATGATTGTGACGCTCAACTCCAAGCTGCTCGGTGGGAAAATCTCCTTTTTCCAATCAATCTGCGTACTTGGCTACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGT GGGGTTCGGTTGGGCAACTTATGCTTCGATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAGCTCTTGCCATGTATCCAATATTCCTGTTTTACTATATCATATCGTGGCTGGTCGTTTCGCACAGCAATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGTTACAACCGAGTCGGACCTGACTGGAACGTGGGGACGGGTGCACGGACACGCACGGGGTAGCACGCCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTACGGCACAGGACACAGGCGGGTTGTTGCTGCATCGGC GGGGGTAAAACAGCACGATCCCACTTAGACTAATCGCTACTGTACTAAATGCCTAGGTATATCAGCTTTTGTATTATACAACTTTCCAACAGATTAGTGTAATAAAGTGATGAATTCCCGCACTCGCGGATTCATTAA]
[-] EMBL CNS09BQH             [                                                                                                                                                                                                                                                                                                                                                                                                                                 CACGACGGCGGGCCCGAGTTCGCGCAGGTTTTTGTGATCGTCTGGATCGGTGCCATGATTGTGACGCTCAACTCCAAGCTGCTCGGTGGGAAAATCTCC TTTTCCAATCAATCTGCGTACTTGGCTACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTTCTATTCTT CTCCGGTTCGTCGTGTCATCGGT GGGGTTCGGTTGGGCAACTTATGCTTCGATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAGCTCTTGCCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTGGTCGTTTCGCACAGCAATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGTTACAACCGAGTCGGACCTGACTGGAACGTGGGGACGGGTGCACGGAAACGCACGGGGTAGCACGCCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTACGGCACAGGACACAGGCGGGTTGTTGCTGCATCGGC GGGGGTAAAACAGCACGATCCCACTTAGACTAATCGCTACTGTACTAAATGCCTAGGTATATCAGCTTTTGTATTATACAACTTTCCAACAGATTAGTGTAATAAAGTGATGAATTCCCGCA                ]
[-] EMBL CNS09593             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCTGCCCGGTGGGAAAATCCCCTTTTTCCAATCAATCTGCGTACTTGGCTACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]


>consensus_8883#0 CCGAAAAGAAAACACAACACACTCGGGCACAGTTAGCGGTAGTTTTTAGCTATGTTCATG TAAATTCTTCATTTAAGTACAGCTCTCGCACACAAAACAGCCATGTCGTCGCCGGAAACA ACGTTAGAGCTGTACGACGATGGAGCGGAATCGCCTTCCGAGCTGATGAGCGGAGAAATG ACCGTTACGAGTGCGCCGCGCAACACGACCGATCCCAGCTCGCCCGACTTCAACACACTG GACGAACCGATCCGGGACACAATCATGCGTGACGTAAAGGCGGTCGGTGTCAAATTCTAC CACGTCCTCATACCGCGGGAAAAGAACACCCTGCTGAGGGACTGGGACCTGTGGGGGCCG CTGGTGCTGTGCACGTTTATGGCCACCATCCTACACGGCTCGTCCGATGAGATGCACGAC GGCGGGCCCGAGTTCGCGCAGGTTTTTGTGATCGTCTGGATCGGTGCCATGATTGTGACG CTCAACTCCAAGCTGCTCGGTGGGAAAATCTCCTTTTTCCAATCAATCTGCGTACTTGGC TACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTATTCAGCACG CAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGTGGGGTTCGGTTGGGCA ACTTATGCTTCGATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAGCTCTTGCC ATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTGGTCGTTTCGCACAGCAAT GTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGTTA CAACCGAGTCGGACCTGACTGGAACGTGGGGACGGGTGCACGGACACGCACGGGGTAGCA CGCCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTACGGCACA GGACACAGGCGGGTTGTTGCTGCATCGGCGGGGGTAAAACAGCACGATCCCACTTAGACT AATCGCTACTGTACTAAATGCCTAGGTATATCAGCTTTTGTATTATACAACTTTCCAACA GATTAGTGTAATAAAGTGATGAATTCCCGCACTCGCGGATTCATTAA



consensusID : consensus_8883#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence
                              [GTGTCGAATCATTCTGTTCCAGCACGCCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGTGGGGTTCGGTTGGGCAACTTACGCTTCGATAATATTCCTCGGCGACAGTCAACCACCAAACCGGAAAGCTCTTGCCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTAGTCGTTTCGCACAGCAATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGTTACAACCGAGTCGGACCCGACTGGAACGTCGGGACGGGTGCACGGACACCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTACGGCATAGGACACAGGCGGGTTGTTGCTGCATCGGCGGGGGTAAAACAGCACGATCCCACTTAGACTAATCGCTACTGTACTAAACGCCTAGGTATATCAGCTTTTGTATTATACAACTTTCCAACAGATTAGTGTAATAAAGTGATGAATTCCCGCACTCGCGGATTCATATACAATC]

[-] EMBL CNS096HK             [GTGTCGAATCATTCTGTTCCAGCACGCCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGTGGGGTTCGGTTGGGCAACTTACGCTTCGATAATATTCCTCGGCGACAGTCAACCACCAAACCGGAAAGCTCTTGCCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTAGTCGTTTCGCACAGCAATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGTTACAACCGAGTCGGACCCGACTGGAACGTCGGGACGGGTGCACGGACACCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTACGGCATAGGACACAGGCGGGTTGTTGCTGCATCGGCGGGGGTAAAACAGCACGATCCCACTTAGACTAATCGCTACTGTACTAAACGCCTAGGTATATCAGCTTTTGTATTATACAACTTTCCAACAGATTAGTGTAATAAAGTGATGAATTCCCGCACTCGCGGATTCATATACAATC]


>consensus_8883#1 GTGTCGAATCATTCTGTTCCAGCACGCCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTC GTGTCATCGGTGGGGTTCGGTTGGGCAACTTACGCTTCGATAATATTCCTCGGCGACAGT CAACCACCAAACCGGAAAGCTCTTGCCATGTATCCAATATTCCTGTTTTACTTTATCATA TCGTGGCTAGTCGTTTCGCACAGCAATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCC ACTGTGATCAATTTGTCACGGCTGTTACAACCGAGTCGGACCCGACTGGAACGTCGGGAC GGGTGCACGGACACCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAG TGTACGGCATAGGACACAGGCGGGTTGTTGCTGCATCGGCGGGGGTAAAACAGCACGATC CCACTTAGACTAATCGCTACTGTACTAAACGCCTAGGTATATCAGCTTTTGTATTATACA ACTTTCCAACAGATTAGTGTAATAAAGTGATGAATTCCCGCACTCGCGGATTCATATACA ATC



consensusID : consensus_8883#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence
                              [CCGCCCACGCGTCCGCTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGTGGGGTTCGGTTGGGCAACTTATGCTTCGATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAGCTCTTGCCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTGGTCGTTTCGCACAGCAATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGTTACAACCGAGTCGGACCTGACTGGCAACGTGGGGACGGGGTGCACGGGACACGCACGGGGATAGCACGCCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTACGGCACAGG]

[+] EMBL BM613959             [CCGCCCACGCGTCCGCTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGTGGGGTTCGGTTGGGCAACTTATGCTTCGATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAGCTCTTGCCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTGGTCGTTTCGCACAGCAATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGTTACAACCGAGTCGGACCTGACTGGCAACGTGGGGACGGGGTGCACGGGACACGCACGGGGATAGCACGCCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTACGGCACAGG]


>consensus_8883#2 CCGCCCACGCGTCCGCTAATAGTGTGTCGAATCATTCTATTCAGCACGCAGACGGCCTTT CTATTCTTCCTCCGGTTCGTCGTGTCATCGGTGGGGTTCGGTTGGGCAACTTATGCTTCG ATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAGCTCTTGCCATGTATCCAATA TTCCTGTTTTACTTTATCATATCGTGGCTGGTCGTTTCGCACAGCAATGTGTAATGGGTT AGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGTTACAACCGAGTCGG ACCTGACTGGCAACGTGGGGACGGGGTGCACGGGACACGCACGGGGATAGCACGCCCCAA TTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTACGGCACAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8883#0      CCGAAAAGAAAACACAACACACTCGGGCACAGTTAGCGGTAGTTTTTAGCTATGTTCATG 60
consensus_8883#1      ------------------------------------------------------------
consensus_8883#2      ------------------------------------------------------------
                                                                                  

consensus_8883#0      TAAATTCTTCATTTAAGTACAGCTCTCGCACACAAAACAGCCATGTCGTCGCCGGAAACA 120
consensus_8883#1      ------------------------------------------------------------
consensus_8883#2      ------------------------------------------------------------
                                                                                  

consensus_8883#0      ACGTTAGAGCTGTACGACGATGGAGCGGAATCGCCTTCCGAGCTGATGAGCGGAGAAATG 180
consensus_8883#1      ------------------------------------------------------------
consensus_8883#2      ------------------------------------------------------------
                                                                                  

consensus_8883#0      ACCGTTACGAGTGCGCCGCGCAACACGACCGATCCCAGCTCGCCCGACTTCAACACACTG 240
consensus_8883#1      ------------------------------------------------------------
consensus_8883#2      ------------------------------------------------------------
                                                                                  

consensus_8883#0      GACGAACCGATCCGGGACACAATCATGCGTGACGTAAAGGCGGTCGGTGTCAAATTCTAC 300
consensus_8883#1      ------------------------------------------------------------
consensus_8883#2      ------------------------------------------------------------
                                                                                  

consensus_8883#0      CACGTCCTCATACCGCGGGAAAAGAACACCCTGCTGAGGGACTGGGACCTGTGGGGGCCG 360
consensus_8883#1      ------------------------------------------------------------
consensus_8883#2      ------------------------------------------------------------
                                                                                  

consensus_8883#0      CTGGTGCTGTGCACGTTTATGGCCACCATCCTACACGGCTCGTCCGATGAGATGCACGAC 420
consensus_8883#1      ------------------------------------------------------------
consensus_8883#2      ------------------------------------------------------------
                                                                                  

consensus_8883#0      GGCGGGCCCGAGTTCGCGCAGGTTTTTGTGATCGTCTGGATCGGTGCCATGATTGTGACG 480
consensus_8883#1      ------------------------------------------------------------
consensus_8883#2      ------------------------------------------------------------
                                                                                  

consensus_8883#0      CTCAACTCCAAGCTGCTCGGTGGGAAAATCTCCTTTTTCCAATCAATCTGCGTACTTGGC 540
consensus_8883#1      ------------------------------------------------------------
consensus_8883#2      ------------------------------------------------------------
                                                                                  

consensus_8883#0      TACTGTCTGACGCCGTGCGCTCTAGCACTAATAGTGTGTCGAATCATTCTATTC-AGCAC 599
consensus_8883#1      -----------------------------------GTGTCGAATCATTCTGTTCCAGCAC 25
consensus_8883#2      ------------CCGCCCACGCGTCCGCTAATAGTGTGTCGAATCATTCTATTC-AGCAC 47
                                                         *************** *** *****

consensus_8883#0      GC-AGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGTGGGGTTCGGTTGGG 658
consensus_8883#1      GCCAGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGTGGGGTTCGGTTGGG 85
consensus_8883#2      GC-AGACGGCCTTTCTATTCTTCCTCCGGTTCGTCGTGTCATCGGTGGGGTTCGGTTGGG 106
                      ** *********************************************************

consensus_8883#0      CAACTTATGCTTCGATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAGCTCTTG 718
consensus_8883#1      CAACTTACGCTTCGATAATATTCCTCGGCGACAGTCAACCACCAAACCGGAAAGCTCTTG 145
consensus_8883#2      CAACTTATGCTTCGATAATATTCCTCGGCGACAGTCAACCACCGAACCGGAAAGCTCTTG 166
                      ******* *********************************** ****************

consensus_8883#0      CCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTGGTCGTTTCGCACAGCA 778
consensus_8883#1      CCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTAGTCGTTTCGCACAGCA 205
consensus_8883#2      CCATGTATCCAATATTCCTGTTTTACTTTATCATATCGTGGCTGGTCGTTTCGCACAGCA 226
                      ******************************************* ****************

consensus_8883#0      ATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGT 838
consensus_8883#1      ATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGT 265
consensus_8883#2      ATGTGTAATGGGTTAGGCTGCAATTAAGTTTGTCCACTGTGATCAATTTGTCACGGCTGT 286
                      ************************************************************

consensus_8883#0      TACAACCGAGTCGGACCTGACTGG-AACGTGGGGACGGG-TGCACGG-ACACGCACGGGG 895
consensus_8883#1      TACAACCGAGTCGGACCCGACTGG-AACGTCGGGACGGG-TGCACGG-ACAC-------- 314
consensus_8883#2      TACAACCGAGTCGGACCTGACTGGCAACGTGGGGACGGGGTGCACGGGACACGCACGGGG 346
                      ***************** ****** ***** ******** ******* ****        

consensus_8883#0      -TAGCACGCCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTAC 954
consensus_8883#1      ---------CCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTAC 365
consensus_8883#2      ATAGCACGCCCCAATTCATAAGAGTGTACACATGACGACCACATCACGGCCACAGTGTAC 406
                               ***************************************************

consensus_8883#0      GGCACAGGACACAGGCGGGTTGTTGCTGCATCGGCGGGGGTAAAACAGCACGATCCCACT 1014
consensus_8883#1      GGCATAGGACACAGGCGGGTTGTTGCTGCATCGGCGGGGGTAAAACAGCACGATCCCACT 425
consensus_8883#2      GGCACAGG---------------------------------------------------- 414
                      **** ***                                                    

consensus_8883#0      TAGACTAATCGCTACTGTACTAAATGCCTAGGTATATCAGCTTTTGTATTATACAACTTT 1074
consensus_8883#1      TAGACTAATCGCTACTGTACTAAACGCCTAGGTATATCAGCTTTTGTATTATACAACTTT 485
consensus_8883#2      ------------------------------------------------------------
                                                                                  

consensus_8883#0      CCAACAGATTAGTGTAATAAAGTGATGAATTCCCGCACTCGCGGATTCATTAA----- 1127
consensus_8883#1      CCAACAGATTAGTGTAATAAAGTGATGAATTCCCGCACTCGCGGATTCATATACAATC 543
consensus_8883#2      ----------------------------------------------------------
                                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)