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Anopheles gambiae
cluster # 8912 cluster # 8912       Sequences # 13       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8912#0 length = 703 sequences # 1  
consensus_8912#1 length = 675 sequences # 8  
consensus_8912#2 length = 669 sequences # 1  
consensus_8912#3 length = 564 sequences # 1  
consensus_8912#4 length = 446 sequences # 1  
consensus_8912#5 length = 109 sequences # 1  

consensusID : consensus_8912#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence
                              [CCGGTGATTGGGTTGTGGTTTCATTTGTTGTCATTCTTGCTTCTAGAGAACATCTTATTCCACAACAAGCAAAATGAGACCAAATACAGCTAATTCCTTCTTGGAGCTTCTATTCTTAACGCTATTGATTGGCTCCCTTTTGCTGCTGTGCCCTGTTAGAGCAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTTAACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGGTTTTTATAACTCATCAGCTGTACCCTTCCTGGTTGCGCCATCAAAAAGAAATGAAGCTTCGGCTGGTGCCCTTTGGAAAGGCATGGATCGAGGAGCATCCCAACGAAGAACCCAAATATCATTGCCAGCATGGACCTCGAGAATGTCAGCTGAACATTTTGCACGGCTGCATTCTCAAAAAACTGCCACCCAAAAAGGCATTCTCGGTGGTGGCGTGTCTGATGAAAAACTTCCGCACTAGCTTCGAACAGTGCATGGAAGGACACGAGTCGTTCCAAACCTCCGTCGTTAATTGCAGCCAAGGGCAACAGGGAGCTAAGTTGTTCAAAGAGTTTGCCAACGAAACAGATAACGTTCATCGGCCGCTTCCCTTCGTACCAACGATCGTTGCTGATGAGCCCTATGACTATTACGAGCAAGACGACTGGGTGCAACAT]

[+] EMBL BM634786             [CCGGTGATTGGGTTGTGGTTTCATTTGTTGTCATTCTTGCTTCTAGAGAACATCTTATTCCACAACAAGCAAAATGAGACCAAATACAGCTAATTCCTTCTTGGAGCTTCTATTCTTAACGCTATTGATTGGCTCCCTTTTGCTGCTGTGCCCTGTTAGAGCAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTTAACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGGTTTTTATAACTCATCAGCTGTACCCTTCCTGGTTGCGCCATCAAAAAGAAATGAAGCTTCGGCTGGTGCCCTTTGGAAAGGCATGGATCGAGGAGCATCCCAACGAAGAACCCAAATATCATTGCCAGCATGGACCTCGAGAATGTCAGCTGAACATTTTGCACGGCTGCATTCTCAAAAAACTGCCACCCAAAAAGGCATTCTCGGTGGTGGCGTGTCTGATGAAAAACTTCCGCACTAGCTTCGAACAGTGCATGGAAGGACACGAGTCGTTCCAAACCTCCGTCGTTAATTGCAGCCAAGGGCAACAGGGAGCTAAGTTGTTCAAAGAGTTTGCCAACGAAACAGATAACGTTCATCGGCCGCTTCCCTTCGTACCAACGATCGTTGCTGATGAGCCCTATGACTATTACGAGCAAGACGACTGGGTGCAACAT]


>consensus_8912#0 CCGGTGATTGGGTTGTGGTTTCATTTGTTGTCATTCTTGCTTCTAGAGAACATCTTATTC CACAACAAGCAAAATGAGACCAAATACAGCTAATTCCTTCTTGGAGCTTCTATTCTTAAC GCTATTGATTGGCTCCCTTTTGCTGCTGTGCCCTGTTAGAGCAGCCGCTACCAATAATGT CAATGTTCAGAGCTCAAACACTCTTAACAAGACTGATCAACTGCCAGTCACCATCTACTA CGAGACTCTATGCAGTGATAGCATGGTTTTTATAACTCATCAGCTGTACCCTTCCTGGTT GCGCCATCAAAAAGAAATGAAGCTTCGGCTGGTGCCCTTTGGAAAGGCATGGATCGAGGA GCATCCCAACGAAGAACCCAAATATCATTGCCAGCATGGACCTCGAGAATGTCAGCTGAA CATTTTGCACGGCTGCATTCTCAAAAAACTGCCACCCAAAAAGGCATTCTCGGTGGTGGC GTGTCTGATGAAAAACTTCCGCACTAGCTTCGAACAGTGCATGGAAGGACACGAGTCGTT CCAAACCTCCGTCGTTAATTGCAGCCAAGGGCAACAGGGAGCTAAGTTGTTCAAAGAGTT TGCCAACGAAACAGATAACGTTCATCGGCCGCTTCCCTTCGTACCAACGATCGTTGCTGA TGAGCCCTATGACTATTACGAGCAAGACGACTGGGTGCAACAT



consensusID : consensus_8912#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 675
fasta sequence
                              [GATCGCAGAGGTNNAAACAGTTCGCCGAAGCAATCCCCGCAGTAATTTTCACATTTCGATGATGTCGTCGATCGTACGCAAAGTGATCTCCACCAAGAAGTGCCCGAAAGCGCTGGCACCGTACAACCAAGCCATCGTGGCTGACCGCACGGTGTACTGTTCCGGTGTGCTCGGTATGGAGCTGGATACGCTGAAGCTGGTGCCGGGTGGTGCGGCCGCCCAAACGGCGAAAGCGCTGGAACATCTCACCAACCTGCTGTCCGAGGCGGGCTCCGGCATTGATAAGGTTGTCAAAACGACCGTCCTGCTGGGCGATATGAACGATTACGCCACCGTGAACGAGGAGTACAAGAAAGTGTTCAACAGCAGCTTCCCAGCGCGAACCTGTTACGGGGGTGTCAAGTTGCCCCTCGGTGCTGCGGTGGAGATCGAAGCCATTGCGTTGACCGGTTCTGTGGTGCACATTTCCGAATGACTAGAGTCGAAAA-TGTAACAGCAG-CAAGCGCAATGATGATGATGGCATTTAGCGAGCGAGGGTTAA-ATGAAGATCCGGTCAACTAATGGGCGTG-C-GGTTACGACGATTGCATTGCCTGTGGTTGGCAACAGTTGGGCTAATCTCATTCCGATTTATGGAACTGTAATAAATGGCAAAACAAATAAAAAAAAAAAAAAAAA]

[+] EMBL AL696804             [GATCGCAGAGGTNNAAACAGTTCGCCGAAGCAATCCCCGCAGTAATTTTCACATTTCGATGATGTCGTCGATCGTACGCAAAGTGATCTCCACCAAGAAGTGCCCGAAAGCGCTGGCACCGTACAACCAAGCCATCGTGGCTGACCGCACGGTGTACTGTTCCGGTGTGCTCGGTATGGAGCTGGATACGCTGAAGCTGGTGCCGGGTGGTGCGGCCG CCAAACGGCGAAAGCGCTGGAACATCTCACCAA CTGCTGTCCGAGGCGGGCTCCGGCATTGATAAGGTTGTTAAAACGACCGTCCTGCTGGGCGATATGAACGATTACGCCACCGTGAACGAGGAGTACAAGAAAGTGTTCAACAGCAGCTTCCCAGCGCGAACCTGTTACGGGGGTGTCAAGTTGGCCCTCGGTGCTGCGGTGGAGATCGAAGCCATTGCGTTGACCGGTTCTGTGGTGCACATTTCCGAATGACTAGAGTCGAAAACTGTAACAGCAGCCAAGCGCAATGATGATGATGGCATTAAGCGAGCGAGGGTTAACATGAAGATCCGGTCAA TAATGGGCGTGACAGGTTACGACGATTGCATTTGCTGTGGTTGGCAACAGTTGGGCTAATCTCATTCCGA TTATG                                           ]
[-] EMBL CNS09S30             [          ccgtAAACAGTTCGCCGAAGCAATCCCCGCAGTAATTTTCACATTTCGATGATGTCGTCGATCGTACGCAAAGTGATCTCCACCAAGAAGTGCCCGAAAGCGCTGGCACCGTACAACCAAGCCATCGTGGCTGACCGCACGGTGTACTGTTCCGGTGTGCTCGGTATGGAGCTGGATACGCTGAAGCTGGTGCCGGGTGGTGCGGCCGCCCAAACGGCGAAAGCGCTGGAACATCTCACCAACCTGCTGTCCGAGGCGGGCTCCGGCATTGATAAGGTTGTCAAAACGACCGTCCTGCTGGGCGATATGAACGATTACGCCACCGTGAACGAGGAGTACAAGAAAGTGTTCAACAGCAGCTTCCCAGCGCGAACCTGTTACGGGGGTGTCAAGTTGCCCCTCGGTGCTGCGGTGGAGATCGAAGCCATTGCGTTGACCGGTTCTGTGGTGCACATTTCCGAATGACTAGAGTCGAAAA TGTAACAGCAG CAAGCGCAATGATGATGATGGCATTTAGCGAGCGAGGGTTAA ATGAAGATCCGGTCAACTAATGGGCGTG C GGTTACGACGATTGCATTGCCTGTGGTTGGCAACAGTTGGGCTAATCTCATTCCGATTTATGGAACTGTAATAAATGGCAAAACAAATAAAAAAAAAAAAAAAAA]
[+] EMBL BX617585             [                                    CCGCAGTAATTTTCACATTTCGATGATGTCGTCGATCGTACGCAAAGTGATCTCCACCAAGAAGTGCCCGAAAGCGCTGGCACCGTACAACCAAGCCATCGTGGCTGACCGCACGGTGTACTGTTCCGGTGTGCTCGGTATGGAGCTGGATACGCTGAAGCTGGTGCCGGGTGGTGCGGCCGCCCAAACGGCGAAAGCGCTGGAACATCTCACCAACCTGCTGTCCGAGGCGGGCTCCGGCATTGATAAGGTTGTCAAAACGACCGTCCTGCTGGGCGATATGAACGATTACGCCACCGTGAACGAGGAGTACAAGAAAGTGTTCAACAGCAGCTTCCCAGCGCGAACCTGTTACGGGGGTGTCAAGTTGCCCCTCGGTGCTGCGGTGGAGATCGAAGCCATTGCGTTGACCGGTTCTGTGGTGCACATTTCCGAATGACTAGAGTCGAAAA TGTAACAGCAG CAAGCGCAATGATGATGATGGCATTTAGCGAGCGAGGGTTAA ATGAAGATCCGGTCAACTAATGGGCGTG C GGTTACGACGATTGCATTGCCTGTGGTTGGCAACAGTTGGGCTAATCTCATTCCGATTTATGGAACTGTAATAAATGG                           ]
[+] EMBL BX626414             [                                              TTTCACATTTCGATGATGTCGTCGATCGTACGCAAAGTGATCTCCACCAAGAAGTGCCCGAAAGCGCTGGCACCGTACAACCAAGCCATCGTGGCTTACCGCACGGTGTACTGTTCCGGTGTGCTCGGTATGGAGCTGGATACGCTGAAGCTGGTGCCGGGTGGTGCGGCCGCCCAAACGGCGAAAGCGCTGGAACATCTCACCAACCTGCTGTCCGAGGCGGGCTCCGGCATTGATAAGGTTGTCAAAACGACCGTCCTGCTGGGCGATATGAACGATTACGCCACCGTGAACGAGGAGTACAAGAAAGTGTTCAACAGCAGCTTCCCAGCGCGAACCTGTTACGGGGGTGTCAAGTTGCCCCTCGGTGCTGCGGTGGAGATCGAAGCCATTGCGTTGACCGGTTCTGTGGTGCACATTTCCGAATGACTAGAGTCGAAAA TGTAACAGCAG CAAGCGCAATGATGATGATGGCATTTAGCGAGCGAGGGTTAA ATGAAGATCCGGTCAACTAATGGGCGTG C GGTTACGACGATTGCATTGCCTGTGGTTGGCAACAGTTGGGCTAATCTCATTCCGATTTATGGAACTGTAATAA                               ]
[+] EMBL BX610303             [                                                                                            CCAAGAAGTGCCCGAAAGCGCTGGCACCGTACAACCAAGCCATCGTGGCTGACCGCACGGTGTACTGTCCCGGTGTGCTCGGTATGGAGCTGGATACGCTGAAGCTGGTGCCGGGTGGTGCGGCCGCCCAAACGGCGAAAGCGCTGGAACATCTCACCAACCTGCTGTCCGAGGCGGGCTCCGGCATTGATAAGGTTGTCAAAACGACCGTCCTGCTGGGCGATATGAACGATTACGCCACCGTGAACGAGGAGTACAAGAAAGTGTTCAACAGCAGCTTCCCAGCGCGAACCTGTTACGGGGGTGTCAAGTTGCCCCTCGGTGCTGCGGTGGAGATCGAAGCCATTGCGTTGACCGGTTCTGTGGTGCACATTTCCGAATGACTAGAGTCGAAAA TGTAACAGCAG CAAGCGCAATGATGATGATGGCATTTAGCGAGCGAGGGTTAA ATGAAGATCCGGTCAACTAATGGGCGTG C GGTTACGACGATTGCATTGCCTGTGGTTGGCAACAGTTGGGCTAATCTCATTCCGATTTATGGAACTGTAATAAATGG                           ]
[+] EMBL BX625695             [                                                                                                                                                     gGGTGTACTGTTCCGGTGTGCTCGGTATGGAGCTGGATACGCTGAAGCTGGTGCCGGGTGGTGCGGCCGCCCAAACGGCGAAAGCGCTGGAACATCTCACCAACCTGCTGTCCGAGGCGGGCTCCGGCATTGATAAGGTTGTCAAAACGACCGTCCTGCTGGGCGATATGAACGATTACGCCACCGTGAACGAGGAGTACAAGAAAGTGTTCAACAGCAGCTTCCCAGCGCGAACCTGTTACGGGGGTGTCAAGTTGCCCCTCGGTGCTGCGGTGGAGATCGAAGCCATTGCGTTGACCGGTTCTGTGGTGCACATTTCCGAATGACTAGAGTCGAAAA TGTAACAGCAG CAAGCGCAATGATGATGATGGCATTTAGCGAGCGAGGGTTAA ATGAAGATCCGGTCAACTAATGGGCGTG C GGTTACGACNATTGCATTGCCTGTGGTTGGCAACAGTTGGGCTAATCTCATTCCGATTTATGGAACTGNAATAAATGGCAAAACA                    ]
[-] EMBL BM617300             [                                                                                                                                                                                                                                      AAGCGCTGGAACATCTCACCAACCTGCTGTCCGAGGCGGGCTCCGGCATTGATAAGGTTGTTAAAACGACCGTCCTGCTGGGCGATATGAACGATTACGCCACCGTGAACGAGGAGTACAAGAAAGTGTTCAACAGCAGCTTCCCAGCGCGAACCTGTTACGGGGGTGTCAAGTTGCCCCTCGGTGCTGCGGTGGAGATCGAAGCCATTGCGTTGACCGGTTCTGTGGTGCACATTTCCGAATGACTAGAGTCGAAAA TGTAACAGCAG CAAGCGCAATGATGATGATGGCATTTAGCGAGCGAGGGTTAA ATGAAGATCCGGTCAACTAATGGGCGTG C GGTTACGACGATTGCATTGCCTGTGGTTGGCAACAGTTGGGCTAATCTCATTCCGATTTATGGAACTGTAATAAATG                            ]
[+] EMBL BM576111             [                                                                                                                                                                                                                                                                                                                                                             ccgccAGTGTTCAACAGCAGCTTCCCAGCGCGAACCTGTTACGGGGGTGTCAAGTTGCCCCTCGGTGCTGCGGTGGAGATCGAAGCCATTGCGTTGACCGGTTCTGTGGTGCACATTTCCGAATGACTAGAGTCGAAAA TGTAACAGCAG CAAGCGCAATGATGATGATGGCATTTAGCGAGCGAGGGTTAA ATGAAGATCCGGTCAACTAATGGGCGTG C GGTTACGACGATTGCATTGCCTGTGGTTGGCAACAGTTGGGCTAATCTCATTCCGATTTATGGAACTGTAATAAATGGCAAAACAAATAAgt             ]


>consensus_8912#1 GATCGCAGAGGTNNAAACAGTTCGCCGAAGCAATCCCCGCAGTAATTTTCACATTTCGAT GATGTCGTCGATCGTACGCAAAGTGATCTCCACCAAGAAGTGCCCGAAAGCGCTGGCACC GTACAACCAAGCCATCGTGGCTGACCGCACGGTGTACTGTTCCGGTGTGCTCGGTATGGA GCTGGATACGCTGAAGCTGGTGCCGGGTGGTGCGGCCGCCCAAACGGCGAAAGCGCTGGA ACATCTCACCAACCTGCTGTCCGAGGCGGGCTCCGGCATTGATAAGGTTGTCAAAACGAC CGTCCTGCTGGGCGATATGAACGATTACGCCACCGTGAACGAGGAGTACAAGAAAGTGTT CAACAGCAGCTTCCCAGCGCGAACCTGTTACGGGGGTGTCAAGTTGCCCCTCGGTGCTGC GGTGGAGATCGAAGCCATTGCGTTGACCGGTTCTGTGGTGCACATTTCCGAATGACTAGA GTCGAAAATGTAACAGCAGCAAGCGCAATGATGATGATGGCATTTAGCGAGCGAGGGTTA AATGAAGATCCGGTCAACTAATGGGCGTGCGGTTACGACGATTGCATTGCCTGTGGTTGG CAACAGTTGGGCTAATCTCATTCCGATTTATGGAACTGTAATAAATGGCAAAACAAATAA AAAAAAAAAAAAAAA



consensusID : consensus_8912#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence
                              [CCGCCCACGCGTCCGTTTTTTTTGTTTTGCCATTTATTACAGTTCCATAAATCGGAATGAGATTAGCCCAACTGTTGCCAACCACAGGCAATGCAATCGTCGTAACCGCACGCCCATTAGTTGACCGGATCTTCATTTAGTTTCATTTGTTGTTATTCTTGCTTCTAGAGGTAACGTCGAATGTATTCGTCGCTTTAAGAATAGTTATTCTCTGATGTTGAAAAACATATTGAAAATAATAAGATTGTTTAAGTAAAAATGTAAAGTTTTCTTTAGCCGTGATGTACATAGTTTCAATTGAATTCATAATCAATTGTTTCGATGTGTGTTTGCCACAACGAGAATAAGATTTAAAAATTACTTGTTTTATCTAATTCCAGAACATCTTATTCCACAACAAGCAAAATGAGACCAAATACAGCTAATTCCTTCTTGGAGCTTCTATTCATAACGCTATTGATTGGCTCCCTTTTGCTGCTGTGCCCTGTTAGAGTAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGAACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGGTTTTTATAACTCATCAGCTGTACCCTTCCTGGTTGCGTCATCAAAAAGAAATGAAGCTTCGGCTGGTGCCC]

[+] EMBL BM586303             [CCGCCCACGCGTCCGTTTTTTTTGTTTTGCCATTTATTACAGTTCCATAAATCGGAATGAGATTAGCCCAACTGTTGCCAACCACAGGCAATGCAATCGTCGTAACCGCACGCCCATTAGTTGACCGGATCTTCATTTAGTTTCATTTGTTGTTATTCTTGCTTCTAGAGGTAACGTCGAATGTATTCGTCGCTTTAAGAATAGTTATTCTCTGATGTTGAAAAACATATTGAAAATAATAAGATTGTTTAAGTAAAAATGTAAAGTTTTCTTTAGCCGTGATGTACATAGTTTCAATTGAATTCATAATCAATTGTTTCGATGTGTGTTTGCCACAACGAGAATAAGATTTAAAAATTACTTGTTTTATCTAATTCCAGAACATCTTATTCCACAACAAGCAAAATGAGACCAAATACAGCTAATTCCTTCTTGGAGCTTCTATTCATAACGCTATTGATTGGCTCCCTTTTGCTGCTGTGCCCTGTTAGAGTAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGAACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGGTTTTTATAACTCATCAGCTGTACCCTTCCTGGTTGCGTCATCAAAAAGAAATGAAGCTTCGGCTGGTGCCC]


>consensus_8912#2 CCGCCCACGCGTCCGTTTTTTTTGTTTTGCCATTTATTACAGTTCCATAAATCGGAATGA GATTAGCCCAACTGTTGCCAACCACAGGCAATGCAATCGTCGTAACCGCACGCCCATTAG TTGACCGGATCTTCATTTAGTTTCATTTGTTGTTATTCTTGCTTCTAGAGGTAACGTCGA ATGTATTCGTCGCTTTAAGAATAGTTATTCTCTGATGTTGAAAAACATATTGAAAATAAT AAGATTGTTTAAGTAAAAATGTAAAGTTTTCTTTAGCCGTGATGTACATAGTTTCAATTG AATTCATAATCAATTGTTTCGATGTGTGTTTGCCACAACGAGAATAAGATTTAAAAATTA CTTGTTTTATCTAATTCCAGAACATCTTATTCCACAACAAGCAAAATGAGACCAAATACA GCTAATTCCTTCTTGGAGCTTCTATTCATAACGCTATTGATTGGCTCCCTTTTGCTGCTG TGCCCTGTTAGAGTAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGAAC AAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGGTT TTTATAACTCATCAGCTGTACCCTTCCTGGTTGCGTCATCAAAAAGAAATGAAGCTTCGG CTGGTGCCC



consensusID : consensus_8912#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence
                              [CAGAATNGCCCAGGTATACGCTATTGATTGGCTCCCTTTTGCTGCTGTGCCCTGTTAGAGTAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGAACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGGTTTTTATAACTCATCAGCTGTACCCTTCCTGGTTGCGTCATCAAAAAGAAATGAAGCTTCGGCTGGTGCCCTTTGGAAAGGCATGGATCGAGGAGCATCCCAACGAAGAACCCAAATATCATTGCCAGCATGGACCTCGAGAATGTCAGCTGAACATTTTGCACGGCTGCATTCTCAAAAAACTGGCAACCAAAAAGGCATTCTCGGTGGTGGCGTGTCTGATGAAAAACTTCCGCACTAGCTTCGAACAGTGCATGGAAGGACACGAGTCGTTCCAAACTCCGTCGTTAATTGCAGCCAAGGGCAACAGGGAGCTAAGTNNGTTCAAAGAGTTTGCCAACGAAACAGATAACGTTCATCGGCTCTTCCCTTCGTACCAACGATCGTAGCTGATGAGCC]

[+] EMBL AL697308             [CAGAATNGCCCAGGTATACGCTATTGATTGGCTCCCTTTTGCTGCTGTGCCCTGTTAGAGTAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGAACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGGTTTTTATAACTCATCAGCTGTACCCTTCCTGGTTGCGTCATCAAAAAGAAATGAAGCTTCGGCTGGTGCCCTTTGGAAAGGCATGGATCGAGGAGCATCCCAACGAAGAACCCAAATATCATTGCCAGCATGGACCTCGAGAATGTCAGCTGAACATTTTGCACGGCTGCATTCTCAAAAAACTGGCAACCAAAAAGGCATTCTCGGTGGTGGCGTGTCTGATGAAAAACTTCCGCACTAGCTTCGAACAGTGCATGGAAGGACACGAGTCGTTCCAAACTCCGTCGTTAATTGCAGCCAAGGGCAACAGGGAGCTAAGTNNGTTCAAAGAGTTTGCCAACGAAACAGATAACGTTCATCGGCTCTTCCCTTCGTACCAACGATCGTAGCTGATGAGCC]


>consensus_8912#3 CAGAATNGCCCAGGTATACGCTATTGATTGGCTCCCTTTTGCTGCTGTGCCCTGTTAGAG TAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGAACAAGACTGATCAAC TGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGGTTTTTATAACTCATC AGCTGTACCCTTCCTGGTTGCGTCATCAAAAAGAAATGAAGCTTCGGCTGGTGCCCTTTG GAAAGGCATGGATCGAGGAGCATCCCAACGAAGAACCCAAATATCATTGCCAGCATGGAC CTCGAGAATGTCAGCTGAACATTTTGCACGGCTGCATTCTCAAAAAACTGGCAACCAAAA AGGCATTCTCGGTGGTGGCGTGTCTGATGAAAAACTTCCGCACTAGCTTCGAACAGTGCA TGGAAGGACACGAGTCGTTCCAAACTCCGTCGTTAATTGCAGCCAAGGGCAACAGGGAGC TAAGTNNGTTCAAAGAGTTTGCCAACGAAACAGATAACGTTCATCGGCTCTTCCCTTCGT ACCAACGATCGTAGCTGATGAGCC



consensusID : consensus_8912#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence
                              [ACGGTCTAACTTGATTCGATTTTGTAGCGATGAAGGCCATAGCATCACGTACGGTTTAAAGGTGTTGCACACCCAGAACATCTTATTCCACAACAAGCAAAATGAGACCAAATACAGCTAATTCCTTCTTGGAGCTTCTATTCATAACGCTATTGATTGGCTCCCTTTTGCTGCTGTGCCCTGTTAGAGTAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGAACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGGTTTTTATAACTCATCAGCTGTACCCTTCCTGGTTGCGTCATCAAAAAGAAATGAAGCTTCGGCTGGTGCCCTTTGGAAAGGCATGGATCGAGGAGCATCCCAACGAAGAACCCAAATATCATTGCCAGCATGGACCTCGAGAATGTCAGCTG]

[+] EMBL BX614442             [ACGGTCTAACTTGATTCGATTTTGTAGCGATGAAGGCCATAGCATCACGTACGGTTTAAAGGTGTTGCACACCCAGAACATCTTATTCCACAACAAGCAAAATGAGACCAAATACAGCTAATTCCTTCTTGGAGCTTCTATTCATAACGCTATTGATTGGCTCCCTTTTGCTGCTGTGCCCTGTTAGAGTAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGAACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGGTTTTTATAACTCATCAGCTGTACCCTTCCTGGTTGCGTCATCAAAAAGAAATGAAGCTTCGGCTGGTGCCCTTTGGAAAGGCATGGATCGAGGAGCATCCCAACGAAGAACCCAAATATCATTGCCAGCATGGACCTCGAGAATGTCAGCTG]


>consensus_8912#4 ACGGTCTAACTTGATTCGATTTTGTAGCGATGAAGGCCATAGCATCACGTACGGTTTAAA GGTGTTGCACACCCAGAACATCTTATTCCACAACAAGCAAAATGAGACCAAATACAGCTA ATTCCTTCTTGGAGCTTCTATTCATAACGCTATTGATTGGCTCCCTTTTGCTGCTGTGCC CTGTTAGAGTAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGAACAAGA CTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGGTTTTTA TAACTCATCAGCTGTACCCTTCCTGGTTGCGTCATCAAAAAGAAATGAAGCTTCGGCTGG TGCCCTTTGGAAAGGCATGGATCGAGGAGCATCCCAACGAAGAACCCAAATATCATTGCC AGCATGGACCTCGAGAATGTCAGCTG



consensusID : consensus_8912#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 109
fasta sequence
                              [CAAAGGGATCTCCACCAAGAAGGGCCCGAAAGCGCTGGCACCGTACAACCAAGCCATCGGGGCGGACCGCACGGAGAACGGTTCCGGTGTGCCCGGTATGGAGCTGGAA]

[+] EMBL BX609919             [CAAAGGGATCTCCACCAAGAAGGGCCCGAAAGCGCTGGCACCGTACAACCAAGCCATCGGGGCGGACCGCACGGAGAACGGTTCCGGTGTGCCCGGTATGGAGCTGGAA]


>consensus_8912#5 CAAAGGGATCTCCACCAAGAAGGGCCCGAAAGCGCTGGCACCGTACAACCAAGCCATCGG GGCGGACCGCACGGAGAACGGTTCCGGTGTGCCCGGTATGGAGCTGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8912#0      ------------------------------------------------------------
consensus_8912#3      ------------------------------------------------------------
consensus_8912#4      ------------------------------------------------------------
consensus_8912#2      CCGCCCACGCGTCCGTTTTTTTTGTTTTGCCATTTATTACAGTTCCATAAATCGGAATGA 60
consensus_8912#1      ------------------------------------------------------------
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      ------------------------------------------------------------
consensus_8912#3      ------------------------------------------------------------
consensus_8912#4      ------------------------------------------------------------
consensus_8912#2      GATTAGCCCAACTGTTGCCAACCACAGGCAATGCAATCGTCGTAACCGCACGCCCATTAG 120
consensus_8912#1      ------------------------------------------------------------
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      ------------------------------------------------------------
consensus_8912#3      ------------------------------------------------------------
consensus_8912#4      ------------------------------------------------------------
consensus_8912#2      TTGACCGGATCTTCATTTAGTTTCATTTGTTGTTATTCTTGCTTCTAGAGGTAACGTCGA 180
consensus_8912#1      ------------------------------------------------------------
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      ------------------------------------------------------------
consensus_8912#3      ------------------------------------------------------------
consensus_8912#4      ------------------------------------------------------------
consensus_8912#2      ATGTATTCGTCGCTTTAAGAATAGTTATTCTCTGATGTTGAAAAACATATTGAAAATAAT 240
consensus_8912#1      ------------------------------------------------------------
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      ------------------------------------------------------------
consensus_8912#3      ------------------------------------------------------------
consensus_8912#4      ------------------------------------------------------------
consensus_8912#2      AAGATTGTTTAAGTAAAAATGTAAAGTTTTCTTTAGCCGTGATGTACATAGTTTCAATTG 300
consensus_8912#1      ------------------------------------------------------------
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      -------------------------------CCGGTGATTGGGTTGTGGTTTCATTTGTT 29
consensus_8912#3      ------------------------------------------------------------
consensus_8912#4      -----ACGGTCTAACTTGATTCGATTTTGTAGCGATGAAGGCCATAGCATCACGTACGGT 55
consensus_8912#2      AATTCATAATCAATTGTTTCGATGTGTGTTTGCCACAACGAGAATAAGATTTAAAAATTA 360
consensus_8912#1      -----GATCGCAGAGGTNNAAACAGTTCGCCGAAGCAATCCCCGCAGTAATTTTCACATT 55
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      GTCAT--TCTTGCTTCTAGAGAACATCTTATTCCACAACAAGCAAAATGAGACCAAATAC 87
consensus_8912#3      ------------------------------------------------------------
consensus_8912#4      TTAAAGGTGTTGCACACCCAGAACATCTTATTCCACAACAAGCAAAATGAGACCAAATAC 115
consensus_8912#2      CTTGTT-TTATCTAATTCCAGAACATCTTATTCCACAACAAGCAAAATGAGACCAAATAC 419
consensus_8912#1      TCGATGATGTCGTCGATCGTACGCAAAGTGATCTCCACCAAGAAGTGCCCGA--AAGCGC 113
consensus_8912#5      -----------------------CAAAGGGATCTCCACCAAGAAGGGCCCGA--AAGCGC 35
                                                                                  

consensus_8912#0      AGCTAATTCCTTCTTGGAGCTTCTATTCTTAACGC-TATTGATTGGCTCCCTTTTGCTGC 146
consensus_8912#3      --------------CAGAATNGCCCAGGTATACGC-TATTGATTGGCTCCCTTTTGCTGC 45
consensus_8912#4      AGCTAATTCCTTCTTGGAGCTTCTATTCATAACGC-TATTGATTGGCTCCCTTTTGCTGC 174
consensus_8912#2      AGCTAATTCCTTCTTGGAGCTTCTATTCATAACGC-TATTGATTGGCTCCCTTTTGCTGC 478
consensus_8912#1      TGGCACCGTACAACCAAGCCATCGTGGCTGACCGCACGGTGTACTGTTCCGGTGTGCT-C 172
consensus_8912#5      TGGCACCGTACAACCAAGCCATCGGGGCGGACCGCACGGAGAACGGTTCCGGTGTGCC-C 94
                                            *         ***     *    * ***  * ***  *

consensus_8912#0      TGTGCCCTGTTAGAGCAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTTA 206
consensus_8912#3      TGTGCCCTGTTAGAGTAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGA 105
consensus_8912#4      TGTGCCCTGTTAGAGTAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGA 234
consensus_8912#2      TGTGCCCTGTTAGAGTAGCCGCTACCAATAATGTCAATGTTCAGAGCTCAAACACTCTGA 538
consensus_8912#1      GGTATGGAGCTGGATACGCTGAAGCTGGTGCCG--GGTGGTGCGGCCGCCCAAACGGCGA 230
consensus_8912#5      GGTATGGAGCTGGAA--------------------------------------------- 109
                       **     * * **                                              

consensus_8912#0      ACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGG 266
consensus_8912#3      ACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGG 165
consensus_8912#4      ACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGG 294
consensus_8912#2      ACAAGACTGATCAACTGCCAGTCACCATCTACTACGAGACTCTATGCAGTGATAGCATGG 598
consensus_8912#1      AAGCGCTGGAACATCTCACCAACCTGCTGTCCGAGGCGGGCTCCGGCATTGATAAGGTTG 290
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TTTTTATAACTCATCAGCTGTACCCTTCC--TGGTTGCGCCATCAAAAAGAAATGAAGCT 324
consensus_8912#3      TTTTTATAACTCATCAGCTGTACCCTTCC--TGGTTGCGTCATCAAAAAGAAATGAAGCT 223
consensus_8912#4      TTTTTATAACTCATCAGCTGTACCCTTCC--TGGTTGCGTCATCAAAAAGAAATGAAGCT 352
consensus_8912#2      TTTTTATAACTCATCAGCTGTACCCTTCC--TGGTTGCGTCATCAAAAAGAAATGAAGCT 656
consensus_8912#1      TCAAAACGACCGTCCTGCTGGGCGATATGAACGATTACGCCACCGTGAACGAGGAGTACA 350
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TCGGCTGGTGCCCTTTGGAAAGGCATGGATCGAGGAGCATCCCAACGAAGAACCCAAATA 384
consensus_8912#3      TCGGCTGGTGCCCTTTGGAAAGGCATGGATCGAGGAGCATCCCAACGAAGAACCCAAATA 283
consensus_8912#4      TCGGCTGGTGCCCTTTGGAAAGGCATGGATCGAGGAGCATCCCAACGAAGAACCCAAATA 412
consensus_8912#2      TCGGCTGGTGCCC----------------------------------------------- 669
consensus_8912#1      AGAAAGTGTTCAACAGCAGCTTCCCAGCGCGAACCTGTTACGGGGGTGTCAAGTTGCCCC 410
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TCATTGCCAGCATGGACCTCGAGAATGTCAGCTGAACATTTTGCACGGCTGCATTCTCAA 444
consensus_8912#3      TCATTGCCAGCATGGACCTCGAGAATGTCAGCTGAACATTTTGCACGGCTGCATTCTCAA 343
consensus_8912#4      TCATTGCCAGCATGGACCTCGAGAATGTCAGCTG-------------------------- 446
consensus_8912#2      ------------------------------------------------------------
consensus_8912#1      TCGGTGCTGCGGTGGAGATCGAAGCCATTGCGTTGACCGGTTCTGTGGTGCACATTTCCG 470
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      AAAACTGCCACCCAAAAAGGCATTCTCGGTGGTGGCGTGTCTGATGAAAAACTTCCGCAC 504
consensus_8912#3      AAAACTGGCAACCAAAAAGGCATTCTCGGTGGTGGCGTGTCTGATGAAAAACTTCCGCAC 403
consensus_8912#4      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
consensus_8912#1      AATGACTAGAGTCGAAAATGTAACAGCAGCAAGCGCAATGATGATGATGGCATTTAGCGA 530
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TAGCTTCGAACAGTGCATGGAAGGACACGAGTCGTTCCAAACCTCCGTCGTTAATTGCAG 564
consensus_8912#3      TAGCTTCGAACAGTGCATGGAAGGACACGAGTCGTTCCAAAC-TCCGTCGTTAATTGCAG 462
consensus_8912#4      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
consensus_8912#1      GCGAGGGTTAAATGAAGATCCGGTCAACTAATGGGCGTGCGGTTACGACGATTGCATTGC 590
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      CCAAGGGCAACAGGGAGCTAAGTTG-TTCAAAGAGTTTGCCAACGAAACAGATAACGTTC 623
consensus_8912#3      CCAAGGGCAACAGGGAGCTAAGTNNGTTCAAAGAGTTTGCCAACGAAACAGATAACGTTC 522
consensus_8912#4      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
consensus_8912#1      CTGTGGTTGGCAACAGTTGGGCTAATCTCATTCCGATTTATGGAACTGTAATAAATGGCA 650
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      ATCGGCCGCTTCCCTTCGTACCAACGATCGTTGCTGATGAGCCCTATGACTATTACGAGC 683
consensus_8912#3      ATCGGCT-CTTCCCTTCGTACCAACGATCGTAGCTGATGAGCC----------------- 564
consensus_8912#4      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
consensus_8912#1      AAACAAATAAAAAAAAAAAAAAAAA----------------------------------- 675
consensus_8912#5      ------------------------------------------------------------
                                                                                  

consensus_8912#0      AAGACGACTGGGTGCAACAT 703
consensus_8912#3      --------------------
consensus_8912#4      --------------------
consensus_8912#2      --------------------
consensus_8912#1      --------------------
consensus_8912#5      --------------------
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)