|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 786 fasta sequence
[AGAATCCCCACGAGGTTNAACAGCAGACACCACAGTATACACTTTGCACTTCGCCGATGCTTTGCACACAACACCAACATTAGTATGACGCGTACCGCTAGTGGGGCACGCAACGAGATGCCCCTTTGTTCGCCATGTAGCCCACACTCTGAGGCTCGCATGTGTGTTGCACACGGAAACTAGCAGTAGCAGCAGCAGCAGTAGTAGCTGCGAGCTGCTCAACCACCACCAATATAAGAGGCCCGGTGCAACGGTTCGAGTCAAGTCACTAATCTGTTCCTAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA-GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA-AGCGCC-GCC----GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG-CCACGT-AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT-GGGAGAGTAGAAGTTAAACAAAAAAAAAAAAAAAAAAAAAG]
[+] EMBL AL932613 [AGAATCCCCACGAGGTTNAACAGCAGACACCACAGTATACACTTTGCACTTCGCCGATGCTTTGCACACAACACCAACATTAGTATGACGCGTACCGCTAGTGGGGCACGCAACGAGATGCCCCTTTGTTCGCCATGTAGCCCACACTCTGAGGCTCGCATGTGTGTTGCACACGGAAACTAGCAGTAGCAGCAGCAGCAGTAGTAGCTGCGAGCTGCTCAACCACCACCAATATAAGAGGCCCGGTGCAACGGTTCGAGTCAAGTCACTAATCTGTTCCTAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAACGTAAAAGCTAAACCACAGCACGAACCCCAGTACCAA CCAGCCGTTAGGGCACCTTGG GGATTNCGGATCCTGGACAAAGTACGATCTAGTTGGAACAGTATTAGGCCCACGTAAGAGG GTNNACTTC TTTAAGTACACTTTTCATT CCACCAA TCCCTGATACGCCTGCAGT CCGTGCAGCGCTTAAAAACCTATGgtaca ]
[+] EMBL BM625809 [ cCGGTTCGAGTCAAGTCACTAATCTGTTCCTAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAG ]
[-] EMBL CNS091A8 [ caGTTCCTAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGGCTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACCGCACGAACGCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGTAACAGTATTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAGAAG TAAACAAAAAAAAAAAAAAAAAAAAAG]
[+] EMBL BM619620 [ ccgagcaGTTCCTAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAACACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCGCCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGAATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAGCCCAGCCTTCA AGCGCC GCC GGATTTCGGATCCTGGACAAAGTACGATCTAATTGGAACAGTATTAGG CCACGT AGAGGTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTATAACT ATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAGAAGT ]
[+] EMBL BM613754 [ CCGAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAAAGCTAAACCACAGCACGAACCCCAGTACCAACCCAGCCGTT AGGGCA CCCTTGGGGATTTCGGATCCTGGACAAAGTACGATCTAGTTGGAACAGTATTAGG CCACGT AGAGGGTTTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGATACGCCTGCAGTCCCGTGCAGCGCTTTAAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAGAAGTTAAACgt ]
[+] EMBL BM595356 [ CCGAGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTTGGGGAGAGTAG ]
[+] EMBL BM577347 [ ccgGCCGAGCAACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTA ]
[+] EMBL BM646138 [ ccgCGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAGAAGTaac ]
[+] EMBL BM603969 [ ccgCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGAGTAGAAGT ]
[+] EMBL BM603964 [ ccgCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTA AGCGCC GCC GGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGG CCACGT AGAGGTTCTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCCTGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTT GGGAGA ]
[+] EMBL BM610071 [ ACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAA GTAAAAGCTAAACCACAGCACGAACCCCAGTACCAACCCAGCCGTT AGGGCA CCCTTGGGGATTTCGGATCCTGGACAAAGTACGATCTAGTTGGAACAGTATTAGG CCACGT AGAGGGTTTTTTTCTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGATACGCCTGCAGTCCCGTGCAGCGCTTTAAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAA ]
consensusID : consensus_8927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[TAAGCAGTTCCTAGCCGAGCAACGACATCGTGCAATAATCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAAGTAAATGCTAACCCACATCACGAGCCCCAGTACCAGCCCAGCCTTCAAGCGCCGCCGGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTATTAGGCCACGTAGAGGTTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGGGCGGGC]
[+] EMBL CNS08GJG [TAAGCAGTTCCTAGCCGAGCAACGACATCGTGCAATAATCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAGGCTGCTGCAAGTAAATGCTAACCCACATCACGAGCCCCAGTACCAGCCCAGCCTTCAAGCGCCGCCGGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTATTAGGCCACGTAGAGGTTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGGGGGCGGGC]
consensusID : consensus_8927#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[CCGCCCACGCGTCCGACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAACACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCGCCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGAATGGCGCTAAGGAAGGCTGCTGCAAGTAAATGCTAACCCACAGCACGAACCCCAGTACCAGCCCAGCCTTCAAGCGCCGCCGGATTTCGGATCCTGGACAAAGTACGATCTAATTGGAACAGTATTAGGCCACGTAGAGGTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTATAACTATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTTGGGAGAGTAGAAGT]
[+] EMBL BM591339 [CCGCCCACGCGTCCGACGACATCGTGCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAACACCAGCTGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCGCCAGCCCGAACTGCGGTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGAATGGCGCTAAGGAAGGCTGCTGCAAGTAAATGCTAACCCACAGCACGAACCCCAGTACCAGCCCAGCCTTCAAGCGCCGCCGGATTTCGGATCCTGGACAAAGTACGATCTAATTGGAACAGTATTAGGCCACGTAGAGGTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGCTGCAGCCCCGTGCAGCGCTTTTATAACTATGTAAACATTGTAAAGTGAGATTCAAAATATACATCTCTACGGTATGTTGGGAGAGTAGAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8927#0 AGAATCCCCACGAGGTTNAACAGCAGACACCACAGTATACACTTTGCACTTCGCCGATGC 60
consensus_8927#2 ------------------------------------------------------------
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 TTTGCACACAACACCAACATTAGTATGACGCGTACCGCTAGTGGGGCACGCAACGAGATG 120
consensus_8927#2 ------------------------------------------------------------
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 CCCCTTTGTTCGCCATGTAGCCCACACTCTGAGGCTCGCATGTGTGTTGCACACGGAAAC 180
consensus_8927#2 ------------------------------------------------------------
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 TAGCAGTAGCAGCAGCAGCAGTAGTAGCTGCGAGCTGCTCAACCACCACCAATATAAGAG 240
consensus_8927#2 ------------------------------------------------------------
consensus_8927#1 ------------------------------------------------------------
consensus_8927#0 GCCCGGTGCAACGGTTCGAGTCAAGTCACTAATCTGTTCCTAGCCGAGCAACGACATCGT 300
consensus_8927#2 -----------------------------------CCGCCCACGCGTCCGACGACATCGT 25
consensus_8927#1 -----------------------------TAAGCAGTTCCTAGCCGAGCAACGACATCGT 31
** * ** * **********
consensus_8927#0 GCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCATC 360
consensus_8927#2 GCAATATTCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAACACCAGC 85
consensus_8927#1 GCAATAATCGAAGCAATACTTTACGGGGTGTGTTACAATACCAAACCAAACAAAACCAGC 91
****** ********************************************** **** *
consensus_8927#0 TGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCG 420
consensus_8927#2 TGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCGCCAGCCCGAACTGCG 145
consensus_8927#1 TGCAAAAGATGCCGTGCAAAACCTGCGTTGCCGACTGTAAATGCACCAGCCCGAACTGCG 151
******************************************** ***************
consensus_8927#0 GTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAG 480
consensus_8927#2 GTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGAATGGCGCTAAGGAAG 205
consensus_8927#1 GTGCCGGATGTGGCTGCGAGTCACGCTGCACCTGCCCGTGCAAGGATGGCGCTAAGGAAG 211
******************************************** ***************
consensus_8927#0 GCTGCTGCAAGTAAATGCTAACCCACAGCACGAACCCCAGTACCAACCCAGCCGTTAAGC 540
consensus_8927#2 GCTGCTGCAAGTAAATGCTAACCCACAGCACGAACCCCAGTACCAGCCCAGCCTTCAAGC 265
consensus_8927#1 GCTGCTGCAAGTAAATGCTAACCCACATCACGAGCCCCAGTACCAGCCCAGCCTTCAAGC 271
*************************** ***** *********** ******* * ****
consensus_8927#0 GCCGCCGGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTAGTAGGCCACGT 600
consensus_8927#2 GCCGCCGGATTTCGGATCCTGGACAAAGTACGATCTAATTGGAACAGTATTAGGCCACGT 325
consensus_8927#1 GCCGCCGGATTTCGGATCCTGCACAAAGTACGATCAAATTGGAACAGTATTAGGCCACGT 331
********************* ************* ************* **********
consensus_8927#0 AGAGGTTCTTTTT-CTTCTTTTAAGTACACTTTTCATTCCCACCAATTCCCTGGTACGCC 659
consensus_8927#2 AGAGGTTTTTTTT-CTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGC 384
consensus_8927#1 AGAGGTTTTTTTTTCTTCTTTTAAGTACACTTGTCATTCCCACCAATTCCCTGGTACGGC 391
******* ***** ****************** ************************* *
consensus_8927#0 TGCAGTCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATT 719
consensus_8927#2 TGCAGCCCCGTGCAGCGCTTTTATAACTATGT--------AAACATTGTAAAGTGAGATT 436
consensus_8927#1 TGCAGCCCCGTGCAGCGCTTTTAAAACTATGTAAACATGTAAACATTGTAAAGTGAGATT 451
***** ***************** ******** ********************
consensus_8927#0 CAAAATATACATCTCTACGGTATGTTGGGAGAGTAGAAGTTAAACAAAAAAAAAAAAAAA 779
consensus_8927#2 CAAAATATACATCTCTACGGTATGTTGGGAGAGTAGAAGT-------------------- 476
consensus_8927#1 CAAAATATACATCTCTACGGTAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGA 511
********************** * * * **
consensus_8927#0 AAAAAAG------ 786
consensus_8927#2 -------------
consensus_8927#1 GCGGGGGGCGGGC 524
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||