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Anopheles gambiae
cluster # 8948 cluster # 8948       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8948#0 length = 1893 sequences # 10  
consensus_8948#1 length = 585 sequences # 1  
consensus_8948#2 length = 557 sequences # 1  
consensus_8948#3 length = 432 sequences # 1  

consensusID : consensus_8948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1893
fasta sequence
                              [TTTAACAATTGTGCACCNAANACAAAACGAAAGTGAATAAATCTTTTAATGAACGCTTTTACAAGCTTTTTTCCGAGACCGTTTATACTAAAGTATTTAGTGTGGATGGAACGCTTGGCTGATGATGGAGGCCGAGCAGAAGGGCGGCAGGGGTTTACACATTGGGGAATGGCTTAGGTTGTGGCAGTAAGCGAAGCGTAGAGAGAGAGAGAGGTCGCACAACCTGCACTGTTGTACAGTTGTAGTTGAAAGTGGATTGATGAGAGCGAAACAGAATTATTGATTGTGCACAGCAGCCAACGAACAAAACAAAGTGGAAAAAGGATGGACATTGAACAAAAAAAAAGATACTCCGATGCAAGACTGTAAAGTAGCTGAGACGAGAGAAGGAGAGAACATTTAGGATTTGCCGTAGAGTAGCAGGTGCAAAAAGGAATTATAAACAGTAGATGTCGCTTTTTTGCAGACATGGCACAGGATTCATTAGGGCTTAAACTTGGTCACTTGTGAAGCAAAACAAAACAA-AAA-ATGGCAAGATTATAGTTCAAGCAGGTTGATTTGTGGTTCCGGAGAAGAAGAAAATCACCAAAACTCAATTAACCGTAAGCTACGTTTCATCCAGAAGCCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGT--ACACAT--ACACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACC---CGGCGGGCGCAGATTGCATAAGC-A----AAAAAAAGGATGCACCACACCTTGAGACATGCGGCAACAAACAATTGCTATGCCAAAGATTAGAATTAACAAAACACGCCCCACAGACACAAACAGACACACAGATAGAGCAGAGAAGAAGAGGGGAAAACAGCAGCTTAATGTGAAGAACACATGACAAAAGATTGAAGCTTCCTCCCCA-AAAGCAAAGCCATATTATTTTGAGCTTCTTCTCGCCAACCGAACCTGCAATAGAGTATATAAAAAAACGGTGGACCAAACTCCTGCCCATGCCCCGCCACTAAAGAAAACCCCCATAATAGCCGGTCTTTTACTTTAGCTTCCTTTTGCCGCTTCTGTTCCTGCTCTGATGAAGACATGGTTCGCACTGATTCGTTGGCCAAACGCAAGAAAACACAGAAATAGAGAGAAACAATTGCAAATGCATATCATATGAATTCTGCTGCTTGTAATGCAACAAAACAAACACGCGATGTGATAGGAGACGGACGCGGACACACCCGGGTACACCCGTGACGTGTTAGCGTAGCAAAGAAAAAAGAAAAAACAAAAATAAATACACACATATTTTGCTATACTGCATTTATCTTTCCTTCCTTCCCGCGCGCGCCGGGACGCTAAACGCGCCCCCGGTTAAATCCCCGGTTGAAATATATTATAAATATAAGGCTAGCGCGTACCCCAGAGGCAAATGATGCAAACCTCCTACACAAAACACACACCGATAAACACAAAGATACGCTCTCTAACGCAAAAAACCACATGGTCCCCCCCCTTGATCGACTTAATAGTCAATTTTGAAATTTCGCTTCTTAAGCACATGAGACAGAGAGAACGGAAATGAAAGTTATGACACAAAGTCCTCCACCCTCACAAATACACAGAGAAAGTACATACAAACAAAAAAAGTTCCCACTGACACACTGAATCAATTAACAGTACAGGATAGTTATAAAGAACCGGAGAAGATAAGCGACAAGAAAACACTGAAAAAGACCGTTATAAACAAAAATCAATCCACTTCCGGCAGGGTTGCTGTAGTGGGTGGATGGCGGCCAACCCCGGTTGACTATGTGAAAGCCATACCGTAAAGAGTGGAATGGAAGGAAGCGGAGAAGATGGCAAGAAAAATGCTAAATAAAGTAAAACTATT]

[+] EMBL BX621055             [TTTAACAATTGTGCACCNAANACAAAACGAAAGTGAATAAATCTTTTAATGAACGCTTTTACAAGCTTTTTTCCGAGACCGTTTATACTAAAGTATTTAGTGTGGATGGAACGCTTGGCTGATGATGGAGGCCGAGCAGAAGGGCGGCAGGGGTTTACACATTGGGGAATGGCTTAGGTTGTGGCAGTAAGCGAAGCGTAGAGAGAGAGAGAGGTCGCACAACCTGCACTGTTGTACAGTTGTAGTTGAAAGTGGATTGATGAGAGCGAAACAGAATTATTGATTGTGCACAGCAGCCAACGAACAAAACAAAGTGGAAAAAGGATGGACATTGAACAAAAAAAAAGATACTCCGATGCAAGACTGTAAAGTAGCTGAGACGAGAGAAGGAGAGAACATTTAGGATTTGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AGA281071            [                                        ATCTTTTAATGCACGCTTTTACAAGCTTTTTTCCGAGACCGTTTATACTAAAGTATTTAGTGTGGATGGAACGCTTGGCTGATGATGGAGGCCGAGCATAACGGCGGCAGGGGTTTACACATTGGGGAATGGCTTAGGTTGTGGCAGTAAGCGAAGCGTANAGAGAGAGAGAGGTCGCACAACCTGCACTGTTGTACAGTTGTAGTTGAAAGTGGATTGATGAGAGCGAAACAGAATTATTGATTGTGCACAGCAGCCAACGAACAAAACAAAGTGGAAAAAGGATGGACATTGAACAAAAAAAAAGATACTCCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX627817             [                                                                                                                             TGGAGGCCGAGCAGAAGGGCGGCAGGGGTTTACACATTGGGGAATGGCTTAGGTTGTGGCAGTAAGCGAAGCGTAGAGAGAGAGAGAGGTCGCACAACCTGCACTGTTGTACAGTTGTAGTTGAAAGTGGATTGATGAGAGCGAAACAGAATTATTGATTGTGCACAGCAGCCAACGAACAAAACAAAGTGGAAAAAGGATGGACATTGAACAAAAAAAAAGATACTCCGATGCAAGACTGTAAAGTAGCTGAGACGAGAGAAGGAGAGAACATTTAGGATTTGCCGTAGAGTAGCAGGTGCAAAAAGGAATTATAAACAGTAGATGTCGCTTTTTTGCAGACATGGCACAGGATTCATTAGGGCTTAAACTTGGTCACTTGTGAAGCAAAACAAAACAA AAA ATGGCAAGATTATAGTTCAAGCAGGTTGATTTGTGGTTCCGGAGAAGAAGAAAATCACCAAAACTCAATTAACCGTAAGCTACGTTTCATCCAGAAGCCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGT  ACACAT  ACACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACC   CGGCGGGCGCAGATTGCATAAGC A    AAAAAAAGGATGCACCACACCTTGAGACATGCGGCAACAAACAATTGCTATGCCAAAGATTAGAATTAACAAAACACGCCCCACAGACACAAACAGACACACAGATAGAGCAGAGAAGAAGAGGGGAAAATAGCAGCTTAATGTGAAGAA NCATGGCAAAAGATTGATGTTTGCTCCCCACNAAGCAGAGCCATATTATTTTGAGCTTCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AGA282823            [                                                                                                                                                                                                                             ACCTGCACTGTTGTACAGTTGTACTTGAAAGTGGATTGATGAGAGCGAAACATAATTATTGATTGTGCACAGCAGCCAACGAACAAAACATAGTGGAAAAAGGATGGACATTGAACAAAAAAAAAGATACTCCGATGCAAGACTGTAAAGTATCTGATACGATAGAAGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM614307             [                                                                                                                                                                                                                                                                                                                                           ccGAACAAAAAAAAAGATACTCCGATGCAAGACTGTAAAGTAGCTGAGACGAGAGAAGGAGAGAACATTTAGGATTTGCTGTAGAGTAGCAGGTGCAAAAAGGAATTATAAACAGTAGATGTCGCTTTTTTGCAGACATGGCACAGGATTCATTAGGGCTTAAACTTGGTCACTTGTGAAGCAAAACAAAACAA AAA ATGGCAAGATTATAGTTCAAGCAGGTTGATGTGTGGTTCCGCAGAAGAAGAAAATCACCAAAACTCAATTAACCGTAAGCTACGTTTCATTCAGAAGCCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGT  AC      ACACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACCCGGCGGCGGGCGCAGATTGCAAAAGC AAAACAAAAAAAGGATGCAC  CACCTTGAGACATGCGGCAACAAACAATTGCTATGCCAAAGATTAGAATTAACAAAACACGCCCCACACACACACACAGACACACAGATAGAGCGGAGAAGAAGAGGGGAAAACAGCAGCTTAATGTGAAGAACACATGACAAAAGATTGAAGCTTCCTCCCCA AAAGCAAAGCCATATTATTTTGAGCTTCTTCTCGCCAACCGAACCTGCAATAGAGTATATAAAAAAACGGTGGACCAAACTCCTGCCCATGCCCCGCCACTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX628355             [                                                                                                                                                                                                                                                                                                                                                                    TGCAAGACTGTAAAGTAGCTGAGACGAGAGAAGGAGAGAACATTTAGGATTTGCTGTAGAGTAGCAGGTGCAAAAAGGAATTATAAACAGTAGATGTCGCTTTTTTGCAGACATGGCACAGGATTCATTAGGGCTTAAACTTGGTCACTTGTGAAGCAAAACAAAAAAA AAC ATGGCAAGATTATAGTTCAAGCAGGTTGATTTGTGGTTCCGGAGAAGAAGAAAATCACCAAAACTCAATTAACCGTAAGCTACGTTTCATCCAGAAGCCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGT  ACACATACACACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACC   CGGCGGGCGCAGATTGCATAAGCAA    AAAAAAAGGATGCACCACACCTTGAGACATGCGGCAACAAACAATTGCTATGCCAAAGATTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AGA282699            [                                                                                                                                                                                                                                                                                                                                                                                                                   GATTTGCCGTAGAGTAGCAGGTGCAAAAAGGAATTATAAACAGTAGATGTCGCTTTTTTGCTGACATGGCACAGGATTCATTAGGGCTTAAACTTGGTCACATGTGAAGCAAAACAAAAAAACAAACATGGCAAGATTATAGTTCAAGCAGGTTGATGTGTGGTTCCGGTGAAGAAGAAAATCACCAAAACTCAATTAACCGTAAGCTACGTTTCATCCAGAAGCCACCAAAAGCCATTCCCGTTAGTAGATTGTACATTTAAAGTACACACAC  ACACACACACAACTTCAAAACCACCGCTACCGTAAATGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AGA281199            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAAACTCAATTAACCGTAAGCTACGTTTCATCCAGAAGCCACCAAAAGCCATTCCCGTTAGTAGATTGTACATTTAAAGTACACACAC  ACACACACACAACTTCAAAACCACCGCTACCGTAAATGGCACCCGGCGGCGGGCGCAGATTGCAAAAGC A    AAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM640114             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ccgAGCAGCTTAATGTGAAGAACACATGACAAAAGATTGAAGCTTCCTCCCCA AAAGCAAAGCCATATTATTTTGAGCTTCTTCTCGCCAACCGAACCTGCAATAGAGTATATAAAAAAACGGTGGACCAAACTCCTGCCCATGCCCCGCCACTAAAGAAAACCCCCATAATAGCCGGTCTTTTACTTTAGCTTCCTTTTGCCGCTTCTGTTCCTGCTCTGATGAAGACATGGTTCGCACTGATTCGTTGGCCAAACGCAAGAAAACACAGAAATAGAGAGAAACAATTGCAAATGCATATCATATGAATTCTGCTGCTTGTAATGCAACAAAACAAACACGCGATGTGATAGGAGACGGACGCGGACACACCCGGGTACACCCGTGACGTGTTAGCGTAGCAAAGAAAAAAGAAAAAACAAAAATAAATACACACATATTTTGCTATACTGCATTTATCTTTCCTTCCTTCCCGCGCGCGCCGGGACGCTAAACGCGCCCCCGGTTAAATCCCCGGTTGAAATATATTATAAATATAAGGCTAGCGCGTACCCCAGAGGCAAATGATGCAAACCTCCTACACAAAACACACACCGATAAACACAAAGATACGCTCTCTAACGCAAAAAACCACATGGTCCCCCC                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM579133             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ccGCATTTATCTTTCCTTCCTTCCCGCGCGCGCCGGGACGCTAAACGCGCCCCCGGTTAAATCCCCGGTTGAAATATATTATAAATATAAGGCTAGCGCGTACCCCAGAGGCAAATGATGCAAACCTCCTACACAAAACACACACCGATAAACACAAAGATACGCTCTCTAACGCAAAAAACCACAT GTCCCCCCCCTTGATCGACTTAATAGTCAATTTTGAAATTTCGCTTCTTAAGCACATGAGACAGAGAGAACGGAAATGAAAGTTATGACACAAAGTCCTCCACCCTCACAAATACACAGAGAAAGTACATACAAACAAAAAAAGTTCCCACTGACACACTGAATCAATTAACAGTACAGGATAGTTATAAAGAACCGGAGAAGATAAGCGACAAGAAAACACTGAAAAAGACCGTTATAAACAAAAATCAATCCACTTCCGGCAGGGTTGCTGTAGTGGGTGGATGGCGGCCAACCCCGGTTGACTATGTGAAAGCCATACCGTAAAGAGTGGAATGGAAGGAAGCGGAGAAGATGGCAAGAAAAATGCTAAATAAAGTAAAACTATT]


>consensus_8948#0 TTTAACAATTGTGCACCNAANACAAAACGAAAGTGAATAAATCTTTTAATGAACGCTTTT ACAAGCTTTTTTCCGAGACCGTTTATACTAAAGTATTTAGTGTGGATGGAACGCTTGGCT GATGATGGAGGCCGAGCAGAAGGGCGGCAGGGGTTTACACATTGGGGAATGGCTTAGGTT GTGGCAGTAAGCGAAGCGTAGAGAGAGAGAGAGGTCGCACAACCTGCACTGTTGTACAGT TGTAGTTGAAAGTGGATTGATGAGAGCGAAACAGAATTATTGATTGTGCACAGCAGCCAA CGAACAAAACAAAGTGGAAAAAGGATGGACATTGAACAAAAAAAAAGATACTCCGATGCA AGACTGTAAAGTAGCTGAGACGAGAGAAGGAGAGAACATTTAGGATTTGCCGTAGAGTAG CAGGTGCAAAAAGGAATTATAAACAGTAGATGTCGCTTTTTTGCAGACATGGCACAGGAT TCATTAGGGCTTAAACTTGGTCACTTGTGAAGCAAAACAAAACAAAAAATGGCAAGATTA TAGTTCAAGCAGGTTGATTTGTGGTTCCGGAGAAGAAGAAAATCACCAAAACTCAATTAA CCGTAAGCTACGTTTCATCCAGAAGCCACCAAAAGCCATCCCCGTTAGTAGATTGTACAT TTAAAGTACACATACACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACCCGGC GGGCGCAGATTGCATAAGCAAAAAAAAGGATGCACCACACCTTGAGACATGCGGCAACAA ACAATTGCTATGCCAAAGATTAGAATTAACAAAACACGCCCCACAGACACAAACAGACAC ACAGATAGAGCAGAGAAGAAGAGGGGAAAACAGCAGCTTAATGTGAAGAACACATGACAA AAGATTGAAGCTTCCTCCCCAAAAGCAAAGCCATATTATTTTGAGCTTCTTCTCGCCAAC CGAACCTGCAATAGAGTATATAAAAAAACGGTGGACCAAACTCCTGCCCATGCCCCGCCA CTAAAGAAAACCCCCATAATAGCCGGTCTTTTACTTTAGCTTCCTTTTGCCGCTTCTGTT CCTGCTCTGATGAAGACATGGTTCGCACTGATTCGTTGGCCAAACGCAAGAAAACACAGA AATAGAGAGAAACAATTGCAAATGCATATCATATGAATTCTGCTGCTTGTAATGCAACAA AACAAACACGCGATGTGATAGGAGACGGACGCGGACACACCCGGGTACACCCGTGACGTG TTAGCGTAGCAAAGAAAAAAGAAAAAACAAAAATAAATACACACATATTTTGCTATACTG CATTTATCTTTCCTTCCTTCCCGCGCGCGCCGGGACGCTAAACGCGCCCCCGGTTAAATC CCCGGTTGAAATATATTATAAATATAAGGCTAGCGCGTACCCCAGAGGCAAATGATGCAA ACCTCCTACACAAAACACACACCGATAAACACAAAGATACGCTCTCTAACGCAAAAAACC ACATGGTCCCCCCCCTTGATCGACTTAATAGTCAATTTTGAAATTTCGCTTCTTAAGCAC ATGAGACAGAGAGAACGGAAATGAAAGTTATGACACAAAGTCCTCCACCCTCACAAATAC ACAGAGAAAGTACATACAAACAAAAAAAGTTCCCACTGACACACTGAATCAATTAACAGT ACAGGATAGTTATAAAGAACCGGAGAAGATAAGCGACAAGAAAACACTGAAAAAGACCGT TATAAACAAAAATCAATCCACTTCCGGCAGGGTTGCTGTAGTGGGTGGATGGCGGCCAAC CCCGGTTGACTATGTGAAAGCCATACCGTAAAGAGTGGAATGGAAGGAAGCGGAGAAGAT GGCAAGAAAAATGCTAAATAAAGTAAAACTATT



consensusID : consensus_8948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence
                              [AGATCGCCGAGGTTTACGTAAGCTACGTTTCATCCAGAAGCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGTACACATACACACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACCCGGCGGGCGCAGATTGCATAAGCAAAAAAAAAGGATGCACCACACCTTGAGACATGCGGCAACAAACAATTGCTATGCCAAAGATTAGAATTAACAAAACACGCCCCACACACACAAACAGACACACAGATAGAGCGGAGAAGAAGAGGGGAAAATAGCAGCTTAATGTGAAGAACACATGACAAAAGATTGATGTTTGCTCCCCACAAAGCAGAGCCATATTATTTTGAGCTTCTTCTCGCCAACCGAACCTGCAATAGTATGTATGTAAAAAAACGGTGGACCAAACTCCTGCCCATTCCCCGCCACTAAAGAACAACCCCCATAATAGCCGGTCTTCTTACTTTAGCTTCCTTTCNGCCGCTTCTATTCCTGCTCTGATGAAGACATGGTTCGCACTGATTCGTCTGGCCAAACAAAAGAACAAAACACAGAAACTAGCAGACGAAACAA]

[+] EMBL AL930920             [AGATCGCCGAGGTTTACGTAAGCTACGTTTCATCCAGAAGCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGTACACATACACACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACCCGGCGGGCGCAGATTGCATAAGCAAAAAAAAAGGATGCACCACACCTTGAGACATGCGGCAACAAACAATTGCTATGCCAAAGATTAGAATTAACAAAACACGCCCCACACACACAAACAGACACACAGATAGAGCGGAGAAGAAGAGGGGAAAATAGCAGCTTAATGTGAAGAACACATGACAAAAGATTGATGTTTGCTCCCCACAAAGCAGAGCCATATTATTTTGAGCTTCTTCTCGCCAACCGAACCTGCAATAGTATGTATGTAAAAAAACGGTGGACCAAACTCCTGCCCATTCCCCGCCACTAAAGAACAACCCCCATAATAGCCGGTCTTCTTACTTTAGCTTCCTTTCNGCCGCTTCTATTCCTGCTCTGATGAAGACATGGTTCGCACTGATTCGTCTGGCCAAACAAAAGAACAAAACACAGAAACTAGCAGACGAAACAA]


>consensus_8948#1 AGATCGCCGAGGTTTACGTAAGCTACGTTTCATCCAGAAGCACCAAAAGCCATCCCCGTT AGTAGATTGTACATTTAAAGTACACATACACACACACACAACTTGAAAACCACCGCTACC GTAAATGGCACCCGGCGGGCGCAGATTGCATAAGCAAAAAAAAAGGATGCACCACACCTT GAGACATGCGGCAACAAACAATTGCTATGCCAAAGATTAGAATTAACAAAACACGCCCCA CACACACAAACAGACACACAGATAGAGCGGAGAAGAAGAGGGGAAAATAGCAGCTTAATG TGAAGAACACATGACAAAAGATTGATGTTTGCTCCCCACAAAGCAGAGCCATATTATTTT GAGCTTCTTCTCGCCAACCGAACCTGCAATAGTATGTATGTAAAAAAACGGTGGACCAAA CTCCTGCCCATTCCCCGCCACTAAAGAACAACCCCCATAATAGCCGGTCTTCTTACTTTA GCTTCCTTTCNGCCGCTTCTATTCCTGCTCTGATGAAGACATGGTTCGCACTGATTCGTC TGGCCAAACAAAAGAACAAAACACAGAAACTAGCAGACGAAACAA



consensusID : consensus_8948#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGATCCCCGTTAGTAGATTGTACATTTAAAGTACACACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACCCGGCGGCGGGCGCAGATTGCAAAAGCAAAACAAAAAAAGGATGCACCACCTTGAGACATGCGGCAACAAACAATTGCTATGCCAAAGATTAGAATTAACAAAACACGCCCCACACACACACACAGACACACAGATAGAGCGGAGAAGAAGAGGGGAAAACAGCAGCTTAATGTGAAGAACACATGACAAAAGATTGAAGCTTCCTCCCCAAAAGCAAAGCCATATTATTTTGAGCTTCTTCTCGCCAACCGAACCTGCAATAGAGTATATAAAAAAACGGTGGACCAAACTCCTGCCCATGCCCCGCCACTAAAGAAAACCCCCATAATAGCCGGTCTTTTACTTTAGCTTCCTTTTGCCGCTTCTGTTCCTGCTCTGATGAAGACATGGTTCGCACTGATTCGTTGGCCAAACGCAAGAAAACACAGAAATAGAGAGAAACAATTGCAAATGCA]

[+] EMBL BM647413             [CCGCCCACGCGTCCGCCCACGCGTCCGATCCCCGTTAGTAGATTGTACATTTAAAGTACACACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACCCGGCGGCGGGCGCAGATTGCAAAAGCAAAACAAAAAAAGGATGCACCACCTTGAGACATGCGGCAACAAACAATTGCTATGCCAAAGATTAGAATTAACAAAACACGCCCCACACACACACACAGACACACAGATAGAGCGGAGAAGAAGAGGGGAAAACAGCAGCTTAATGTGAAGAACACATGACAAAAGATTGAAGCTTCCTCCCCAAAAGCAAAGCCATATTATTTTGAGCTTCTTCTCGCCAACCGAACCTGCAATAGAGTATATAAAAAAACGGTGGACCAAACTCCTGCCCATGCCCCGCCACTAAAGAAAACCCCCATAATAGCCGGTCTTTTACTTTAGCTTCCTTTTGCCGCTTCTGTTCCTGCTCTGATGAAGACATGGTTCGCACTGATTCGTTGGCCAAACGCAAGAAAACACAGAAATAGAGAGAAACAATTGCAAATGCA]


>consensus_8948#2 CCGCCCACGCGTCCGCCCACGCGTCCGATCCCCGTTAGTAGATTGTACATTTAAAGTACA CACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACCCGGCGGCGGGCGCAGATT GCAAAAGCAAAACAAAAAAAGGATGCACCACCTTGAGACATGCGGCAACAAACAATTGCT ATGCCAAAGATTAGAATTAACAAAACACGCCCCACACACACACACAGACACACAGATAGA GCGGAGAAGAAGAGGGGAAAACAGCAGCTTAATGTGAAGAACACATGACAAAAGATTGAA GCTTCCTCCCCAAAAGCAAAGCCATATTATTTTGAGCTTCTTCTCGCCAACCGAACCTGC AATAGAGTATATAAAAAAACGGTGGACCAAACTCCTGCCCATGCCCCGCCACTAAAGAAA ACCCCCATAATAGCCGGTCTTTTACTTTAGCTTCCTTTTGCCGCTTCTGTTCCTGCTCTG ATGAAGACATGGTTCGCACTGATTCGTTGGCCAAACGCAAGAAAACACAGAAATAGAGAG AAACAATTGCAAATGCA



consensusID : consensus_8948#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence
                              [CCGCCCACGCGTCCGTTAGGATTTGCTGTAGAGTAGCAGGTGCAAAAAGGAATTATAAACAGTAGATGTCGCTTTTTTGCAGACATGGCACAGGATTCATTAGGGCTTAAACTTGGTCACTTGTGAAGCAAAACGAAACAAAAAATGGCAAGATTATAGTTCAAGCAGGTTGATGTGTGGTTCCGCAGAAGAAGAATATCTCCAAAACTCAATTAACCGTAAGCTACGTTTCATTCAAAAGCCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGTACACACACACACAACTTGAAAACCACCGGTACCGTAAATGGCACCCGGAGGCGGGCGCAGATTGCAAAAGCAGAACAAAAAAAGGATGCACCACCTTGAGACATGCGGGAACTAACAATTGCTATGCCAAAGATTAGAATTAACAAAAC]

[+] EMBL BM597579             [CCGCCCACGCGTCCGTTAGGATTTGCTGTAGAGTAGCAGGTGCAAAAAGGAATTATAAACAGTAGATGTCGCTTTTTTGCAGACATGGCACAGGATTCATTAGGGCTTAAACTTGGTCACTTGTGAAGCAAAACGAAACAAAAAATGGCAAGATTATAGTTCAAGCAGGTTGATGTGTGGTTCCGCAGAAGAAGAATATCTCCAAAACTCAATTAACCGTAAGCTACGTTTCATTCAAAAGCCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGTACACACACACACAACTTGAAAACCACCGGTACCGTAAATGGCACCCGGAGGCGGGCGCAGATTGCAAAAGCAGAACAAAAAAAGGATGCACCACCTTGAGACATGCGGGAACTAACAATTGCTATGCCAAAGATTAGAATTAACAAAAC]


>consensus_8948#3 CCGCCCACGCGTCCGTTAGGATTTGCTGTAGAGTAGCAGGTGCAAAAAGGAATTATAAAC AGTAGATGTCGCTTTTTTGCAGACATGGCACAGGATTCATTAGGGCTTAAACTTGGTCAC TTGTGAAGCAAAACGAAACAAAAAATGGCAAGATTATAGTTCAAGCAGGTTGATGTGTGG TTCCGCAGAAGAAGAATATCTCCAAAACTCAATTAACCGTAAGCTACGTTTCATTCAAAA GCCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGTACACACACACACAACTT GAAAACCACCGGTACCGTAAATGGCACCCGGAGGCGGGCGCAGATTGCAAAAGCAGAACA AAAAAAGGATGCACCACCTTGAGACATGCGGGAACTAACAATTGCTATGCCAAAGATTAG AATTAACAAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8948#0      TTTAACAATTGTGCACCNAANACAAAACGAAAGTGAATAAATCTTTTAATGAACGCTTTT 60
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      ACAAGCTTTTTTCCGAGACCGTTTATACTAAAGTATTTAGTGTGGATGGAACGCTTGGCT 120
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      GATGATGGAGGCCGAGCAGAAGGGCGGCAGGGGTTTACACATTGGGGAATGGCTTAGGTT 180
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      GTGGCAGTAAGCGAAGCGTAGAGAGAGAGAGAGGTCGCACAACCTGCACTGTTGTACAGT 240
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      TGTAGTTGAAAGTGGATTGATGAGAGCGAAACAGAATTATTGATTGTGCACAGCAGCCAA 300
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      -----------------------------------AGATCGCCGAGGTTTACGTAAGCTA 25
consensus_8948#2      -----------------------------------------------------CCGCCCA 7
                                                                                  

consensus_8948#0      CGAACAAAACAAAGTGGAAAAAGGATGGACATTGAACAAAAAAAAAGATACTCCGATGCA 360
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      CGTTTCATCCAGAAGCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGTACAC 85
consensus_8948#2      CGCGTCCGCCC-ACGCGTC-----CGATCCCCGTTAGTAGATTGTACATTTAAAGTACAC 61
                                                                                  

consensus_8948#0      AGACTGTAAAGTAGCTGAGACGAGAGAAGGAGAGAACATTTAGGATTTGCCGTAGAGTAG 420
consensus_8948#3      ------------------------CCGCCCACGCGTCCGTTAGGATTTGCTGTAGAGTAG 36
consensus_8948#1      ATACACACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACCCGGCGG---GCGC 142
consensus_8948#2      ------ACACACACAACTTGAAAACCACCGCTACCGTAAATGGCACCCGGCGGCGGGCGC 115
                                                              * * *   *  *    *   

consensus_8948#0      CAGGTGCAAAAAGGAATTATAAACAGTAGATGTCGCTTTTTTGCAGACATGGCACAGGA- 479
consensus_8948#3      CAGGTGCAAAAAGGAATTATAAACAGTAGATGTCGCTTTTTTGCAGACATGGCACAGGA- 95
consensus_8948#1      AGATTGCATAAGCAAAA---AAAAAGGATGCACCACACCTTGAGACATGCGGCAACAAAC 199
consensus_8948#2      AGATTGCAAAAGCAAAACAAAAAAAGGATGCACCAC--CTTGAGACATGCGGCAACAAAC 173
                          **** **   **    *** ** *     * *   **   * *   ****    * 

consensus_8948#0      ------TTCATTAGGGCTTAAACTTGGT-------------CACTTGTGAAGCAAAACAA 520
consensus_8948#3      ------TTCATTAGGGCTTAAACTTGGT-------------CACTTGTGAAGCAAAACGA 136
consensus_8948#1      AATTGCTATGCCAAAGATTAGAATTAACAAAACACGCCCCACACACACAAACAGACACAC 259
consensus_8948#2      AATTGCTATGCCAAAGATTAGAATTAACAAAACACGCCCCACACACACACACAGACACAC 233
                            *     *  * *** * **                ***      *   * **  

consensus_8948#0      AACAAAAAATGGCAAGATTATAGTTCAA--GCAGGTTGATTTGTGGTTC-CGGAGAAGAA 577
consensus_8948#3      AACAAAAAATGGCAAGATTATAGTTCAA--GCAGGTTGATGTGTGGTTC-CGCAGAAGAA 193
consensus_8948#1      AGATAGAGCGGAGAAGAAGAGGGGAAAATAGCAGCTTAATGTGAAGAACACATGACAAAA 319
consensus_8948#2      AGATAGAGCGGAGAAGAAGAGGGGAAAACAGCAGCTTAATGTGAAGAACACATGACAAAA 293
                      *   * *   *  ****  *  *   **  **** ** ** **  *  * *     * **

consensus_8948#0      GAAAA--------TCACCA------AAACTCAATTAACCGTAAGCTACGTTTCATCCAG- 622
consensus_8948#3      GAATA--------TCTCCA------AAACTCAATTAACCGTAAGCTACGTTTCATTCAA- 238
consensus_8948#1      GATTGATGTTTGCTCCCCACAAAGCAGAGCCATATTATTTTGAGCTTCTTCTCGCCAACC 379
consensus_8948#2      GATTGAAGCTTCCTCCCCA-AAAGCAAAGCCATATTATTTTGAGCTTCTTCTCGCCAACC 352
                      **           ** ***      * *  **  * *   * **** * * **    *  

consensus_8948#0      AAGCCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGTACACATACACACACA 682
consensus_8948#3      AAGCCACCAAAAGCCATCCCCGTTAGTAGATTGTACATTTAAAGTACAC----ACACACA 294
consensus_8948#1      GAACCTGCAATAGT-ATGTATGTAAAAAAACGGTGGACCAAACTCCTGCCCATTC-CCCG 437
consensus_8948#2      GAACCTGCAATAG---AGTATATAAAAAAACGGTGGACCAAACTCCTGCCCATGC-CCCG 408
                       * **  *** **         * *  * *  **  *   **      *     * * * 

consensus_8948#0      CAACTTGAAAACCACCGCTACCGTAAATGGCACCCGG---CGGGC---------GCAGAT 730
consensus_8948#3      CAACTTGAAAACCACCGGTACCGTAAATGGCACCCGGAGGCGGGC---------GCAGAT 345
consensus_8948#1      CCACTAAAGAACAACCCCCATAATAGCCGGTCTTCTTACTTTAGCTTCCTTTCNGCCGCT 497
consensus_8948#2      CCACTAAAGAA-AACCCCCATAATAGCCGGTCTT-TTACTTTAGCTTCCTTT-TGCCGCT 465
                      * ***  * **  ***   *   **   **             **         ** * *

consensus_8948#0      TGCATAAGCA----AAAAAAAGGATGCACCACACCTTGAGACATGCGGCAACAAACAATT 786
consensus_8948#3      TGCAAAAGCAGAACAAAAAAAGGATGCACCAC--CTTGAGACATGCGGGAACTAACAATT 403
consensus_8948#1      TCTATTCCTGCTCTGATGAAGACATGGTTCGC--ACTGATTCGTCTGGCCAAACAAAAGA 555
consensus_8948#2      TCTGTTCCTGCTCTGATGAAGACATGGTTCGC--ACTGATTCGT-TGGCCAAACGCAAG- 521
                      *              *  **   ***   * *    ***  * *  **  *     **  

consensus_8948#0      GCTATGC-CAAAGATTAGAATTAACAAAACACGCCCCACAGACACAAACAGACACACAGA 845
consensus_8948#3      GCTATGC-CAAAGATTAGAATTAACAAAAC------------------------------ 432
consensus_8948#1      ACAAAACACAGAAACTAGCAGACGAAACAA------------------------------ 585
consensus_8948#2      --AAAACACAGAAATAGAGAGAAACAATTGCAAATGCA---------------------- 557
                         *  * ** * *     *     **                                 

consensus_8948#0      TAGAGCAGAGAAGAAGAGGGGAAAACAGCAGCTTAATGTGAAGAACACATGACAAAAGAT 905
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      TGAAGCTTCCTCCCCAAAAGCAAAGCCATATTATTTTGAGCTTCTTCTCGCCAACCGAAC 965
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      CTGCAATAGAGTATATAAAAAAACGGTGGACCAAACTCCTGCCCATGCCCCGCCACTAAA 1025
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      GAAAACCCCCATAATAGCCGGTCTTTTACTTTAGCTTCCTTTTGCCGCTTCTGTTCCTGC 1085
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      TCTGATGAAGACATGGTTCGCACTGATTCGTTGGCCAAACGCAAGAAAACACAGAAATAG 1145
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      AGAGAAACAATTGCAAATGCATATCATATGAATTCTGCTGCTTGTAATGCAACAAAACAA 1205
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      ACACGCGATGTGATAGGAGACGGACGCGGACACACCCGGGTACACCCGTGACGTGTTAGC 1265
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      GTAGCAAAGAAAAAAGAAAAAACAAAAATAAATACACACATATTTTGCTATACTGCATTT 1325
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      ATCTTTCCTTCCTTCCCGCGCGCGCCGGGACGCTAAACGCGCCCCCGGTTAAATCCCCGG 1385
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      TTGAAATATATTATAAATATAAGGCTAGCGCGTACCCCAGAGGCAAATGATGCAAACCTC 1445
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      CTACACAAAACACACACCGATAAACACAAAGATACGCTCTCTAACGCAAAAAACCACATG 1505
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      GTCCCCCCCCTTGATCGACTTAATAGTCAATTTTGAAATTTCGCTTCTTAAGCACATGAG 1565
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      ACAGAGAGAACGGAAATGAAAGTTATGACACAAAGTCCTCCACCCTCACAAATACACAGA 1625
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      GAAAGTACATACAAACAAAAAAAGTTCCCACTGACACACTGAATCAATTAACAGTACAGG 1685
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      ATAGTTATAAAGAACCGGAGAAGATAAGCGACAAGAAAACACTGAAAAAGACCGTTATAA 1745
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      ACAAAAATCAATCCACTTCCGGCAGGGTTGCTGTAGTGGGTGGATGGCGGCCAACCCCGG 1805
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      TTGACTATGTGAAAGCCATACCGTAAAGAGTGGAATGGAAGGAAGCGGAGAAGATGGCAA 1865
consensus_8948#3      ------------------------------------------------------------
consensus_8948#1      ------------------------------------------------------------
consensus_8948#2      ------------------------------------------------------------
                                                                                  

consensus_8948#0      GAAAAATGCTAAATAAAGTAAAACTATT 1893
consensus_8948#3      ----------------------------
consensus_8948#1      ----------------------------
consensus_8948#2      ----------------------------
                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)